metal-organic compounds
Tetrakis(dimethylammonium) trans-dichloridobis[5,5′-(pyrazine-2,3-diyl)bis(1H-tetrazol-1-ido-κN1)]copper(II)
aDepartment of Chemistry and Biochemistry, National Chung Cheng University, 168 University Road, Min-Hsiung, Chia-Yi, Taiwan
*Correspondence e-mail: chejhl@ccu.edu.tw
The title compound, (C2H8N)4[Cu(C6H2N10)2Cl2], consists of an anionic complex which is composed of a CuII ion surrounded by four N atoms from two pyrazine-2,3-diylbis(1H-tetrazol-1-ide) ligands, and two Cl− atoms in a trans-Cl2N4 coordination geometry; the CuII atom lies on a site of symmetry 2/m. The Cu—Cl distance of 2.8719 (5) Å is long due to the Jahn–Teller distortion of the d9 of CuII ion. The tetrazole and pyrazine rings make an N—C—C—N torsion angle of 38.25 (17)°. The charge of the anionic complex is balanced by four dimethylammonium cations, which interact with the anionic complexes via N—H⋯N and N—H⋯Cl hydrogen bonds.
Related literature
For the coordination compound of 2,3-di-1H-tetrazol-5-ylpyrazine, see: Li et al. (2008). For related structure, see Tao et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536812036896/pk2440sup1.cif
contains datablocks I, global. DOI:Supporting information file. DOI: https://doi.org/10.1107/S1600536812036896/pk2440Isup2.cdx
Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812036896/pk2440Isup3.hkl
4.3-mg (0.025 mmol) CuCl2.2H2O and 10.5-mg (0.05 mmol) H2dtp were dissolved in 1-ml dimethylformamide (DMF) respectively. The solutions were mixed in a reaction vial, adding 50-ml 3M HCl to adjust the pH value to ~1.5. The mixture was ultrasonicated to form a homogeneous yellowish green solution, and was kept at 120°C for three days. The product was washed with a small amount of DMF and acetone, and then dried in air. 18.2 mg of blue plate-like crystals were collected in 97.7% yield, based on Cu.
H atoms, except for H6A and H6B, were positioned geometrically and allowed to ride on their respective parent atoms with C—H = 0.96 Å [methyl, Uiso(H) = 1.5Ueq(C)] and C—H = 0.93 Å [aromatic, Uiso(H) = 1.2Ueq(C)]. H6A and H6B, which are involved in hydrogen bonds, were located in difference Fourier map and are refined freely. The highest peak (0.740 e Å-3) and the deepest hole (-0.257 e Å-3) in the difference Fourier map are located 0.79 Å and 1.19 Å from the atoms C2 and C3, respectively.
Multifunctional tetrazolate ligands have recently been of great interest for the formation of metal-organic frameworks (MOFs). Thus far, the di-topic tetrazolate-based ligand, 2,3-di-1H-tetrazol-5-ylpyrazine (H2dtp) has only been found in a chiral, porous and thermally robust MOF, Zn(dtp) (Li, 2008). In our laboratory, the reaction of H2dtp and CuCl2 in dimethylformamide (DMF) under acidic conditions afforded the title compound (I).
In the title complex anion, the CuII ion is six-coordinated in a distorted octahedral environment, surrounded by two Cl- anions and four N-atoms from two chelating (dtp)2- anionic ligands, forming a trans-Cl2N4 coordination geometry (Fig. 1). The bonding mode is quite different from that observed in Zn(dtp). The
of the [CuCl2(dtp)2]4- anion contains one quarter of the complex, with the CuII ion located at a site of 2/m symmetry, and the two Cl- anions lie in a mirror plane. The Cu—Cl bond length, 2.8719 (5) Å, is unusually long due to Jahn-Teller distortion of the d9 of CuII ion, while the Cu—N distance is normal at 2.0029 (10) Å. The tetrazolyl and pyrazinyl rings are not coplanar, with a torsion angle of 38.25 (17)°, in accord with the single-bond character of C1—C2 bond, 1.4678 (17) Å. In the aromatic CN4- tetrazolate ring, the N2—N3 bond, 1.3071 (16) Å, has slightly more double bond character than those of N1—N2 and N3—N4 bonds, 1.3455 (15) Å and 1.3450 (17) Å.Four equivalents of [(CH3)2NH2]+ cations are present to balance the charge, as shown in the packing diagram (Fig. 2). Slabs parallel to the bc-plane are formed by hydrogen bonding networks, which are constructed by the N—H bonds of [NH2(CH3)2]+ cations interacting with the Cl- atoms and tetrazolate-N atoms of anionic complexes. Such slabs are stacked along the a-axis through van der Waals interactions among the methyl groups of the dimethylammonium cations.
For the coordination compound of 2,3-di-1H-tetrazol-5-ylpyrazine, see: Li et al. (2008). For related structure, see Tao et al. (2010).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).(C2H8N)4[Cu(C6H2N10)2Cl2] | F(000) = 1548 |
Mr = 747.17 | Dx = 1.512 Mg m−3 |
Orthorhombic, Cmca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2bc 2 | Cell parameters from 999 reflections |
a = 20.613 (2) Å | θ = 5–23.5° |
b = 10.5671 (9) Å | µ = 0.89 mm−1 |
c = 15.0687 (12) Å | T = 293 K |
V = 3282.3 (5) Å3 | Hexagonal, blue |
Z = 4 | 0.06 × 0.06 × 0.05 mm |
Bruker SMART APEX diffractometer | 2079 independent reflections |
Radiation source: fine-focus sealed tube | 1888 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
φ–ω scan | θmax = 28.3°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | h = −27→26 |
Tmin = 0.947, Tmax = 0.959 | k = −14→14 |
18389 measured reflections | l = −19→20 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.030 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0517P)2 + 1.6198P] where P = (Fo2 + 2Fc2)/3 |
2079 reflections | (Δ/σ)max = 0.001 |
120 parameters | Δρmax = 0.74 e Å−3 |
0 restraints | Δρmin = −0.26 e Å−3 |
(C2H8N)4[Cu(C6H2N10)2Cl2] | V = 3282.3 (5) Å3 |
Mr = 747.17 | Z = 4 |
Orthorhombic, Cmca | Mo Kα radiation |
a = 20.613 (2) Å | µ = 0.89 mm−1 |
b = 10.5671 (9) Å | T = 293 K |
c = 15.0687 (12) Å | 0.06 × 0.06 × 0.05 mm |
Bruker SMART APEX diffractometer | 2079 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1999) | 1888 reflections with I > 2σ(I) |
Tmin = 0.947, Tmax = 0.959 | Rint = 0.024 |
18389 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.085 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.08 | Δρmax = 0.74 e Å−3 |
2079 reflections | Δρmin = −0.26 e Å−3 |
120 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.5000 | 0.0000 | 0.5000 | 0.02900 (12) | |
Cl1 | 0.5000 | −0.23652 (5) | 0.59389 (3) | 0.03605 (14) | |
C1 | 0.42546 (6) | 0.07284 (12) | 0.66989 (8) | 0.0248 (3) | |
C2 | 0.46598 (6) | 0.00989 (11) | 0.73673 (8) | 0.0253 (3) | |
C3 | 0.46657 (8) | −0.09929 (14) | 0.86700 (10) | 0.0391 (3) | |
H3 | 0.4447 | −0.1387 | 0.9134 | 0.047* | |
C4 | 0.32397 (9) | 0.36802 (17) | 0.42405 (12) | 0.0474 (4) | |
H4A | 0.3170 | 0.3341 | 0.4824 | 0.071* | |
H4B | 0.2836 | 0.3985 | 0.4006 | 0.071* | |
H4C | 0.3545 | 0.4366 | 0.4273 | 0.071* | |
C5 | 0.30596 (8) | 0.15966 (16) | 0.35528 (11) | 0.0442 (4) | |
H5A | 0.3052 | 0.1116 | 0.4093 | 0.066* | |
H5B | 0.3210 | 0.1070 | 0.3076 | 0.066* | |
H5C | 0.2630 | 0.1894 | 0.3421 | 0.066* | |
N1 | 0.43237 (5) | 0.07041 (10) | 0.58166 (7) | 0.0266 (2) | |
N2 | 0.38148 (6) | 0.13511 (11) | 0.54897 (7) | 0.0323 (3) | |
N3 | 0.34593 (6) | 0.17510 (12) | 0.61510 (8) | 0.0342 (3) | |
N4 | 0.37226 (6) | 0.13670 (11) | 0.69221 (8) | 0.0312 (3) | |
N5 | 0.43235 (6) | −0.04459 (12) | 0.80258 (8) | 0.0349 (3) | |
N6 | 0.34981 (6) | 0.26828 (14) | 0.36567 (9) | 0.0364 (3) | |
H6A | 0.3595 (11) | 0.3006 (19) | 0.3099 (15) | 0.059 (6)* | |
H6B | 0.3887 (12) | 0.2447 (19) | 0.3834 (13) | 0.053 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.01762 (17) | 0.0475 (2) | 0.02182 (18) | 0.000 | 0.000 | −0.01293 (12) |
Cl1 | 0.0268 (2) | 0.0411 (3) | 0.0402 (3) | 0.000 | 0.000 | 0.0032 (2) |
C1 | 0.0213 (6) | 0.0300 (6) | 0.0231 (6) | −0.0018 (4) | 0.0021 (4) | −0.0041 (5) |
C2 | 0.0256 (7) | 0.0273 (6) | 0.0231 (6) | −0.0004 (5) | 0.0013 (5) | −0.0038 (4) |
C3 | 0.0442 (8) | 0.0416 (8) | 0.0316 (7) | −0.0034 (7) | 0.0052 (6) | 0.0105 (6) |
C4 | 0.0503 (10) | 0.0485 (9) | 0.0433 (9) | 0.0003 (7) | 0.0054 (8) | 0.0000 (7) |
C5 | 0.0405 (8) | 0.0494 (9) | 0.0428 (8) | 0.0033 (7) | −0.0050 (7) | −0.0014 (7) |
N1 | 0.0206 (5) | 0.0374 (6) | 0.0219 (5) | 0.0022 (4) | −0.0014 (4) | −0.0042 (4) |
N2 | 0.0238 (5) | 0.0458 (7) | 0.0274 (6) | 0.0061 (5) | −0.0025 (4) | −0.0016 (5) |
N3 | 0.0257 (6) | 0.0451 (7) | 0.0319 (6) | 0.0078 (5) | 0.0006 (4) | −0.0013 (5) |
N4 | 0.0270 (6) | 0.0386 (6) | 0.0279 (5) | 0.0055 (4) | 0.0045 (4) | −0.0020 (5) |
N5 | 0.0324 (6) | 0.0413 (6) | 0.0309 (6) | −0.0036 (5) | 0.0041 (5) | 0.0050 (5) |
N6 | 0.0244 (6) | 0.0565 (8) | 0.0282 (6) | 0.0034 (5) | 0.0017 (5) | 0.0067 (5) |
Cu1—N1i | 2.0029 (10) | C4—H4A | 0.9600 |
Cu1—N1ii | 2.0029 (10) | C4—H4B | 0.9600 |
Cu1—N1 | 2.0029 (10) | C4—H4C | 0.9600 |
Cu1—N1iii | 2.0029 (10) | C5—N6 | 1.469 (2) |
Cu1—Cl1 | 2.8719 (5) | C5—H5A | 0.9600 |
C1—N4 | 1.3309 (16) | C5—H5B | 0.9600 |
C1—N1 | 1.3374 (15) | C5—H5C | 0.9600 |
C1—C2 | 1.4678 (17) | N1—N2 | 1.3455 (15) |
C2—N5 | 1.3405 (17) | N1—N2 | 1.3455 (15) |
C2—C2ii | 1.402 (3) | N2—N3 | 1.3071 (16) |
C3—N5 | 1.3319 (19) | N3—N2 | 1.3071 (16) |
C3—C3ii | 1.378 (3) | N3—N4 | 1.3450 (17) |
C3—H3 | 0.9300 | N6—H6A | 0.93 (2) |
C4—N6 | 1.473 (2) | N6—H6B | 0.88 (2) |
N1i—Cu1—N1ii | 180.0 | H4B—C4—H4C | 109.5 |
N1i—Cu1—N1 | 91.77 (6) | N6—C5—H5A | 109.5 |
N1ii—Cu1—N1 | 88.23 (6) | N6—C5—H5B | 109.5 |
N1i—Cu1—N1iii | 88.23 (6) | H5A—C5—H5B | 109.5 |
N1ii—Cu1—N1iii | 91.77 (6) | N6—C5—H5C | 109.5 |
N1—Cu1—N1iii | 180.0 | H5A—C5—H5C | 109.5 |
N1i—Cu1—Cl1 | 88.82 (3) | H5B—C5—H5C | 109.5 |
N1ii—Cu1—Cl1 | 91.18 (3) | C1—N1—N2 | 105.74 (10) |
N1—Cu1—Cl1 | 91.18 (3) | C1—N1—N2 | 105.74 (10) |
N1iii—Cu1—Cl1 | 88.82 (3) | C1—N1—Cu1 | 133.78 (9) |
N4—C1—N1 | 110.40 (11) | N2—N1—Cu1 | 120.43 (8) |
N4—C1—C2 | 121.69 (11) | N2—N1—Cu1 | 120.43 (8) |
N1—C1—C2 | 127.80 (11) | N3—N2—N1 | 108.79 (10) |
N5—C2—C2ii | 121.15 (8) | N2—N3—N4 | 109.56 (11) |
N5—C2—C1 | 114.09 (11) | N2—N3—N4 | 109.56 (11) |
C2ii—C2—C1 | 124.68 (7) | C1—N4—N3 | 105.50 (10) |
N5—C3—C3ii | 121.98 (8) | C3—N5—C2 | 116.86 (13) |
N5—C3—H3 | 119.0 | C5—N6—C4 | 113.59 (13) |
C3ii—C3—H3 | 119.0 | C5—N6—H6A | 108.9 (13) |
N6—C4—H4A | 109.5 | C4—N6—H6A | 110.8 (13) |
N6—C4—H4B | 109.5 | C5—N6—H6B | 111.8 (13) |
H4A—C4—H4B | 109.5 | C4—N6—H6B | 110.5 (13) |
N6—C4—H4C | 109.5 | H6A—N6—H6B | 100.5 (18) |
H4A—C4—H4C | 109.5 | ||
N4—C1—C2—N5 | 38.25 (17) |
Symmetry codes: (i) x, −y, −z+1; (ii) −x+1, y, z; (iii) −x+1, −y, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6B···Cl1iii | 0.88 (2) | 2.32 (2) | 3.1731 (13) | 162.7 (18) |
N6—H6A···N4iv | 0.93 (2) | 1.91 (2) | 2.8381 (17) | 175 (2) |
Symmetry codes: (iii) −x+1, −y, −z+1; (iv) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | (C2H8N)4[Cu(C6H2N10)2Cl2] |
Mr | 747.17 |
Crystal system, space group | Orthorhombic, Cmca |
Temperature (K) | 293 |
a, b, c (Å) | 20.613 (2), 10.5671 (9), 15.0687 (12) |
V (Å3) | 3282.3 (5) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.89 |
Crystal size (mm) | 0.06 × 0.06 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX |
Absorption correction | Multi-scan (SADABS; Bruker, 1999) |
Tmin, Tmax | 0.947, 0.959 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18389, 2079, 1888 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.085, 1.08 |
No. of reflections | 2079 |
No. of parameters | 120 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.74, −0.26 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6B···Cl1i | 0.88 (2) | 2.32 (2) | 3.1731 (13) | 162.7 (18) |
N6—H6A···N4ii | 0.93 (2) | 1.91 (2) | 2.8381 (17) | 175 (2) |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x, −y+1/2, z−1/2. |
Acknowledgements
The authors thank the National Science Council of Taiwan for financial support.
References
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Multifunctional tetrazolate ligands have recently been of great interest for the formation of metal-organic frameworks (MOFs). Thus far, the di-topic tetrazolate-based ligand, 2,3-di-1H-tetrazol-5-ylpyrazine (H2dtp) has only been found in a chiral, porous and thermally robust MOF, Zn(dtp) (Li, 2008). In our laboratory, the reaction of H2dtp and CuCl2 in dimethylformamide (DMF) under acidic conditions afforded the title compound (I).
In the title complex anion, the CuII ion is six-coordinated in a distorted octahedral environment, surrounded by two Cl- anions and four N-atoms from two chelating (dtp)2- anionic ligands, forming a trans-Cl2N4 coordination geometry (Fig. 1). The bonding mode is quite different from that observed in Zn(dtp). The asymmetric unit of the [CuCl2(dtp)2]4- anion contains one quarter of the complex, with the CuII ion located at a site of 2/m symmetry, and the two Cl- anions lie in a mirror plane. The Cu—Cl bond length, 2.8719 (5) Å, is unusually long due to Jahn-Teller distortion of the d9 electron configuration of CuII ion, while the Cu—N distance is normal at 2.0029 (10) Å. The tetrazolyl and pyrazinyl rings are not coplanar, with a torsion angle of 38.25 (17)°, in accord with the single-bond character of C1—C2 bond, 1.4678 (17) Å. In the aromatic CN4- tetrazolate ring, the N2—N3 bond, 1.3071 (16) Å, has slightly more double bond character than those of N1—N2 and N3—N4 bonds, 1.3455 (15) Å and 1.3450 (17) Å.
Four equivalents of [(CH3)2NH2]+ cations are present to balance the charge, as shown in the packing diagram (Fig. 2). Slabs parallel to the bc-plane are formed by hydrogen bonding networks, which are constructed by the N—H bonds of [NH2(CH3)2]+ cations interacting with the Cl- atoms and tetrazolate-N atoms of anionic complexes. Such slabs are stacked along the a-axis through van der Waals interactions among the methyl groups of the dimethylammonium cations.