metal-organic compounds
Bis(μ-3-carboxy-2-hydroxypropane-1,2-dicarboxylato)bis(diaquazinc)–1,2-bis(pyridin-4-yl)ethene–water (1/1/2)
aDepartment of Fine Chemistry, Seoul National University of Science and Technology, Seoul 139-743, Republic of Korea, bDepartment of Forest and Environment Resources, Kyungpook National University, Sangju 742-711, Republic of Korea, and cDepartment of Chemistry and Nano Science, Ewha Women's University, Seoul 120-750, Republic of Korea
*Correspondence e-mail: chealkim@seoultech.ac.kr, ymeekim@ehwa.ac.kr
The 2(C6H6O7)2(H2O)4]·C12H10N2·2H2O, comprises half of a centrosymmetric complex dimer, half of a 1,2-bis(pyridin-4-yl)ethene molecule, which lies across an inversion centre, and one lattice water molecule. Carboxylate groups of two dianionic citrate ligands bridge two ZnII ions to give the cyclic dimer, with each ZnII ion coordinated by four O atoms from the chelating citrate ligand (one hydroxy and three carboxylate, with one bridging) and two water O atoms, forming a distorted octahedral environment [Zn—O = 2.040 (3)–2.244 (3) Å]. In the crystal, O—H⋯O and O—H⋯N hydrogen bonds involving hydroxy groups and both coordinating and lattice water molecules link the dimers to give a three-dimensional framework structure.
of the title compound, [ZnRelated literature
For interactions of metal ions with biologically active molecules, see: Daniele et al. (2008); Parkin (2004); Tshuva & Lippard (2004); Stoumpos et al. (2009). For a manganese citrate complex, see: Hwang et al. (2012). For related complexes, see: Shin et al. (2009); Yu et al. (2009); Kim et al. (2011).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1997); cell SAINT (Bruker, 1997); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL .
Supporting information
https://doi.org/10.1107/S1600536812039761/zs2234sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812039761/zs2234Isup2.hkl
Citric acid (19.4 mg, 0.1 mmol) and Zn(NO3)2.6H2O (30.4 mg, 0.1 mmol) were dissolved in 4 ml of H2O and carefully layered by 4 ml of an acetonitrile solution of 1,2-bis(4-pyridyl)ethylene (37.6 mg, 0.2 mmol). Suitable crystals of the title compound were obtained in a month.
H atoms bonded to carbon were placed in calculated positions with C—H = 0.95 Å (aromatic C) and 0.99 Å (methylene C) and were included in the
in a riding-motion approximation with Uiso(H) = 1.2Ueq(C). The H atom bonded to the carboxylate O was placed in a calculated position with O—H = 0.84 Å and was also included in the in the riding-motion approximation with Uiso(H) = 1.5Ueq(O). The position of hydroxyl H atom was refined with O—H = 0.93 Å and Uiso(H) = 1.5Ueq(O). The positions of O—H atoms of the coordinated water ligands were refined with O—H = 0.86 Å and Uiso(H) = 1.2Ueq(N). The positions of O—H atoms of the free water molecule were refined with O—H = 0.96 Å and Uiso(H) =1.2Ueq(O).Citric acid has often been used as a model ligand to examine the interaction between transition metal ions with biologically active molecules (Daniele et al., 2008; Parkin, 2004; Tshuva & Lippard, 2004; Stoumpos et al., 2009). Recently, our group has also reported a novel compound from the reaction of manganese(II) nitrate as a building block and citric acid as a ligand (Hwang et al., 2012). In order to study the effects of secondary metal ions on the interaction between transition metal ions and citric acid (Shin et al., 2009; Yu et al., 2009; Kim et al., 2011), we have employed zinc as a metal
We report here the structure of [Zn2(H2O)4(C6H8O7)2].C12H10N2.2H2O.In the structure of the title compound (Fig. 1) the π–π interactions involving the 1,2-bis(pyridin-4-yl)ethene molecule [centroid = C11–C15/N11; ring centroid separation = 3.97 (7) Å; symmetry code: -x, -y + 1, -z + 2].
contains half of a centrosymmetric complex dimer, half of a 1,2-bis(pyridin-4-yl)ethene molecule which lies across an inversion centre and one water molecule. Carboxylate groups of two dianionic citrate ligands bridge two ZnII ions giving the cyclic dimer, with each ZnO6centre coordinated by four O atoms from the ligand (one hydroxyl and three carboxyl) and two water O atoms, forming a distorted octahedral environment [Zn—O, 2.040 (3)–2.244 (3) Å]. In the crystal, O—H—O and O—H···N hydrogen bonds involving hydroxyl groups and both coordinated and solvent water molecules (Table 1) link the dimers giving a three-dimensional framework structure. The is further stabilized by weak intermolecularFor interactions of metal ions with biologically active molecules, see: Daniele et al. (2008); Parkin (2004); Tshuva & Lippard (2004); Stoumpos et al. (2009). For a manganese citrate complex, see: Hwang et al. (2012). For related complexes, see: Shin et al. (2009); Yu et al. (2009); Kim et al. (2011).
Data collection: SMART (Bruker, 1997); cell
SAINT (Bruker, 1997); data reduction: SAINT (Bruker, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of the title compound showing the atom numbering scheme. Displacement ellipsoids are shown at the 50% probability level. The labelled atoms are related with unlabelled atoms by symmetry code: -x + 1, -y + 1, -z + 1 for the diaquabis(citrato)dizinc fragment and -x, -y, -z + 2 for the 1,2-bis(pyridin-4-yl)ethene molecule. |
[Zn2(C6H6O7)2(H2O)4]·C12H10N2·2H2O | Z = 1 |
Mr = 801.31 | F(000) = 412 |
Triclinic, P1 | Dx = 1.721 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.4360 (19) Å | Cell parameters from 11909 reflections |
b = 9.4540 (19) Å | θ = 2.7–27.6° |
c = 10.098 (2) Å | µ = 1.64 mm−1 |
α = 66.87 (3)° | T = 170 K |
β = 70.19 (3)° | Block, colourless |
γ = 75.91 (3)° | 0.30 × 0.10 × 0.10 mm |
V = 773.0 (3) Å3 |
Bruker SMART CCD diffractometer | 2924 independent reflections |
Radiation source: fine-focus sealed tube | 2382 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
φ and ω scans | θmax = 26.0°, θmin = 2.3° |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | h = −11→6 |
Tmin = 0.638, Tmax = 0.853 | k = −11→11 |
4216 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0822P)2] where P = (Fo2 + 2Fc2)/3 |
2924 reflections | (Δ/σ)max < 0.001 |
239 parameters | Δρmax = 0.77 e Å−3 |
7 restraints | Δρmin = −1.36 e Å−3 |
[Zn2(C6H6O7)2(H2O)4]·C12H10N2·2H2O | γ = 75.91 (3)° |
Mr = 801.31 | V = 773.0 (3) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.4360 (19) Å | Mo Kα radiation |
b = 9.4540 (19) Å | µ = 1.64 mm−1 |
c = 10.098 (2) Å | T = 170 K |
α = 66.87 (3)° | 0.30 × 0.10 × 0.10 mm |
β = 70.19 (3)° |
Bruker SMART CCD diffractometer | 2924 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 1997) | 2382 reflections with I > 2σ(I) |
Tmin = 0.638, Tmax = 0.853 | Rint = 0.034 |
4216 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 7 restraints |
wR(F2) = 0.140 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.77 e Å−3 |
2924 reflections | Δρmin = −1.36 e Å−3 |
239 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.68767 (6) | 0.59099 (5) | 0.60957 (5) | 0.02122 (19) | |
O1 | 0.5132 (3) | 0.4257 (3) | 0.7203 (3) | 0.0209 (6) | |
H1O | 0.466 (4) | 0.431 (5) | 0.651 (4) | 0.031* | |
O2 | 0.8003 (4) | 0.3981 (3) | 0.5435 (3) | 0.0260 (7) | |
O3 | 0.8228 (4) | 0.1376 (3) | 0.6320 (4) | 0.0341 (8) | |
O4 | 0.7490 (4) | 0.4656 (3) | 0.8125 (3) | 0.0282 (7) | |
O5 | 0.6894 (4) | 0.3353 (3) | 1.0577 (3) | 0.0310 (7) | |
H5 | 0.7402 | 0.3981 | 1.0558 | 0.046* | |
O6 | 0.4181 (4) | 0.3256 (3) | 0.5605 (3) | 0.0262 (7) | |
O7 | 0.4259 (5) | 0.0698 (3) | 0.6153 (4) | 0.0427 (9) | |
O8 | 0.5622 (4) | 0.7538 (3) | 0.7112 (3) | 0.0287 (7) | |
H8A | 0.542 (6) | 0.8518 (11) | 0.668 (5) | 0.034* | |
H8B | 0.480 (3) | 0.733 (5) | 0.782 (4) | 0.034* | |
O9 | 0.8800 (4) | 0.7008 (3) | 0.5133 (4) | 0.0333 (7) | |
H9A | 0.9753 (13) | 0.675 (6) | 0.507 (6) | 0.040* | |
H9B | 0.866 (6) | 0.8005 (4) | 0.482 (5) | 0.040* | |
C1 | 0.5996 (5) | 0.2711 (4) | 0.7563 (4) | 0.0192 (8) | |
C2 | 0.7522 (5) | 0.2671 (4) | 0.6340 (4) | 0.0222 (9) | |
C3 | 0.6235 (5) | 0.2336 (4) | 0.9105 (4) | 0.0249 (9) | |
H3A | 0.5242 | 0.2187 | 0.9867 | 0.030* | |
H3B | 0.6906 | 0.1340 | 0.9338 | 0.030* | |
C4 | 0.6919 (5) | 0.3555 (4) | 0.9255 (4) | 0.0238 (9) | |
C5 | 0.5058 (5) | 0.1490 (4) | 0.7724 (4) | 0.0235 (9) | |
H5A | 0.5694 | 0.0469 | 0.7911 | 0.028* | |
H5B | 0.4176 | 0.1417 | 0.8617 | 0.028* | |
C6 | 0.4474 (5) | 0.1808 (4) | 0.6386 (4) | 0.0228 (9) | |
N11 | 0.1862 (4) | 0.4370 (4) | 0.9552 (4) | 0.0282 (8) | |
C11 | 0.1610 (6) | 0.3080 (5) | 1.0802 (5) | 0.0300 (10) | |
H11 | 0.1826 | 0.3029 | 1.1674 | 0.036* | |
C12 | 0.1051 (5) | 0.1855 (5) | 1.0827 (5) | 0.0290 (10) | |
H12 | 0.0875 | 0.0967 | 1.1705 | 0.035* | |
C13 | 0.0741 (5) | 0.1939 (5) | 0.9522 (5) | 0.0271 (9) | |
C14 | 0.0990 (5) | 0.3284 (5) | 0.8255 (5) | 0.0280 (10) | |
H14 | 0.0771 | 0.3372 | 0.7372 | 0.034* | |
C15 | 0.1555 (5) | 0.4480 (5) | 0.8300 (5) | 0.0285 (10) | |
H15 | 0.1729 | 0.5388 | 0.7441 | 0.034* | |
C16 | 0.0212 (5) | 0.0643 (5) | 0.9421 (4) | 0.0297 (10) | |
H16 | 0.0168 | 0.0727 | 0.8467 | 0.036* | |
O1W | 0.8324 (4) | 0.0166 (4) | 0.4122 (4) | 0.0430 (9) | |
H1WA | 0.819 (6) | 0.057 (6) | 0.490 (4) | 0.052* | |
H1WB | 0.736 (3) | 0.034 (6) | 0.391 (6) | 0.052* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0271 (3) | 0.0171 (3) | 0.0208 (3) | −0.00588 (19) | −0.0053 (2) | −0.00706 (19) |
O1 | 0.0261 (16) | 0.0154 (12) | 0.0223 (14) | −0.0028 (12) | −0.0067 (13) | −0.0072 (11) |
O2 | 0.0314 (17) | 0.0210 (14) | 0.0240 (14) | −0.0041 (13) | −0.0066 (13) | −0.0064 (12) |
O3 | 0.0333 (19) | 0.0196 (14) | 0.0436 (18) | 0.0001 (13) | −0.0025 (15) | −0.0135 (13) |
O4 | 0.0400 (19) | 0.0243 (15) | 0.0248 (15) | −0.0135 (14) | −0.0144 (14) | −0.0028 (12) |
O5 | 0.047 (2) | 0.0309 (15) | 0.0236 (14) | −0.0232 (15) | −0.0075 (15) | −0.0089 (13) |
O6 | 0.0399 (19) | 0.0193 (13) | 0.0234 (14) | −0.0032 (13) | −0.0146 (14) | −0.0066 (11) |
O7 | 0.076 (3) | 0.0190 (15) | 0.0502 (19) | −0.0098 (16) | −0.037 (2) | −0.0102 (14) |
O8 | 0.040 (2) | 0.0188 (14) | 0.0242 (15) | −0.0045 (14) | −0.0040 (14) | −0.0081 (12) |
O9 | 0.0251 (17) | 0.0230 (15) | 0.0490 (19) | −0.0057 (14) | −0.0071 (16) | −0.0103 (14) |
C1 | 0.025 (2) | 0.0144 (17) | 0.0204 (19) | −0.0048 (16) | −0.0068 (17) | −0.0062 (15) |
C2 | 0.025 (2) | 0.0218 (19) | 0.023 (2) | −0.0038 (18) | −0.0084 (18) | −0.0098 (16) |
C3 | 0.032 (3) | 0.0210 (19) | 0.022 (2) | −0.0100 (18) | −0.0042 (19) | −0.0062 (16) |
C4 | 0.024 (2) | 0.024 (2) | 0.025 (2) | −0.0020 (18) | −0.0075 (18) | −0.0095 (17) |
C5 | 0.028 (2) | 0.0186 (18) | 0.024 (2) | −0.0050 (17) | −0.0079 (18) | −0.0052 (16) |
C6 | 0.027 (2) | 0.0221 (19) | 0.0231 (19) | −0.0049 (17) | −0.0074 (18) | −0.0098 (16) |
N11 | 0.031 (2) | 0.0290 (18) | 0.0293 (18) | −0.0035 (17) | −0.0072 (17) | −0.0162 (16) |
C11 | 0.039 (3) | 0.029 (2) | 0.028 (2) | −0.006 (2) | −0.009 (2) | −0.0143 (18) |
C12 | 0.036 (3) | 0.025 (2) | 0.029 (2) | −0.0079 (19) | −0.010 (2) | −0.0094 (18) |
C13 | 0.026 (2) | 0.026 (2) | 0.031 (2) | −0.0023 (19) | −0.0034 (19) | −0.0156 (18) |
C14 | 0.031 (3) | 0.031 (2) | 0.028 (2) | −0.0002 (19) | −0.011 (2) | −0.0169 (18) |
C15 | 0.028 (3) | 0.030 (2) | 0.028 (2) | −0.0052 (19) | −0.0042 (19) | −0.0118 (18) |
C16 | 0.037 (3) | 0.029 (2) | 0.027 (2) | 0.000 (2) | −0.009 (2) | −0.0172 (18) |
O1W | 0.042 (2) | 0.0371 (18) | 0.057 (2) | −0.0027 (17) | −0.0159 (19) | −0.0224 (17) |
Zn1—O9 | 2.060 (3) | C1—C2 | 1.551 (6) |
Zn1—O6i | 2.069 (3) | C3—C4 | 1.527 (5) |
Zn1—O8 | 2.086 (3) | C3—H3A | 0.9900 |
Zn1—O2 | 2.105 (3) | C3—H3B | 0.9900 |
Zn1—O4 | 2.122 (3) | C5—C6 | 1.525 (5) |
Zn1—O1 | 2.244 (3) | C5—H5A | 0.9900 |
O1—C1 | 1.461 (4) | C5—H5B | 0.9900 |
O1—H1O | 0.930 (2) | N11—C15 | 1.351 (5) |
O2—C2 | 1.296 (5) | N11—C11 | 1.366 (5) |
O3—C2 | 1.248 (5) | C11—C12 | 1.374 (6) |
O4—C4 | 1.264 (5) | C11—H11 | 0.9500 |
O5—C4 | 1.265 (5) | C12—C13 | 1.412 (6) |
O5—H5 | 0.8400 | C12—H12 | 0.9500 |
O6—C6 | 1.299 (5) | C13—C14 | 1.404 (6) |
O6—Zn1i | 2.069 (3) | C13—C16 | 1.481 (6) |
O7—C6 | 1.236 (5) | C14—C15 | 1.384 (6) |
O8—H8A | 0.860 (2) | C14—H14 | 0.9500 |
O8—H8B | 0.860 (2) | C15—H15 | 0.9500 |
O9—H9A | 0.860 (2) | C16—C16ii | 1.345 (8) |
O9—H9B | 0.860 (2) | C16—H16 | 0.9500 |
C1—C3 | 1.539 (5) | O1W—H1WA | 0.960 (2) |
C1—C5 | 1.547 (5) | O1W—H1WB | 0.960 (2) |
O9—Zn1—O6i | 102.94 (13) | C4—C3—H3A | 108.4 |
O9—Zn1—O8 | 94.22 (13) | C1—C3—H3A | 108.4 |
O6i—Zn1—O8 | 94.62 (12) | C4—C3—H3B | 108.4 |
O9—Zn1—O2 | 92.48 (13) | C1—C3—H3B | 108.4 |
O6i—Zn1—O2 | 90.97 (11) | H3A—C3—H3B | 107.4 |
O8—Zn1—O2 | 170.11 (11) | O4—C4—O5 | 123.4 (4) |
O9—Zn1—O4 | 92.53 (13) | O4—C4—C3 | 121.6 (3) |
O6i—Zn1—O4 | 164.39 (12) | O5—C4—C3 | 114.9 (3) |
O8—Zn1—O4 | 86.23 (12) | C6—C5—C1 | 115.6 (3) |
O2—Zn1—O4 | 86.21 (11) | C6—C5—H5A | 108.4 |
O9—Zn1—O1 | 167.91 (11) | C1—C5—H5A | 108.4 |
O6i—Zn1—O1 | 83.38 (11) | C6—C5—H5B | 108.4 |
O8—Zn1—O1 | 95.54 (12) | C1—C5—H5B | 108.4 |
O2—Zn1—O1 | 76.98 (11) | H5A—C5—H5B | 107.5 |
O4—Zn1—O1 | 81.02 (11) | O7—C6—O6 | 124.9 (4) |
C1—O1—Zn1 | 105.3 (2) | O7—C6—C5 | 118.7 (3) |
C1—O1—H1O | 106 (3) | O6—C6—C5 | 116.3 (3) |
Zn1—O1—H1O | 109 (3) | C15—N11—C11 | 120.6 (4) |
C2—O2—Zn1 | 114.9 (2) | N11—C11—C12 | 121.5 (4) |
C4—O4—Zn1 | 130.7 (3) | N11—C11—H11 | 119.3 |
C4—O5—H5 | 109.5 | C12—C11—H11 | 119.3 |
C6—O6—Zn1i | 126.1 (3) | C11—C12—C13 | 118.8 (4) |
Zn1—O8—H8A | 127 (3) | C11—C12—H12 | 120.6 |
Zn1—O8—H8B | 121 (3) | C13—C12—H12 | 120.6 |
H8A—O8—H8B | 101 (5) | C14—C13—C12 | 118.9 (4) |
Zn1—O9—H9A | 137 (3) | C14—C13—C16 | 118.6 (4) |
Zn1—O9—H9B | 117 (4) | C12—C13—C16 | 122.5 (4) |
H9A—O9—H9B | 106 (5) | C15—C14—C13 | 119.6 (4) |
O1—C1—C3 | 106.3 (3) | C15—C14—H14 | 120.2 |
O1—C1—C5 | 110.4 (3) | C13—C14—H14 | 120.2 |
C3—C1—C5 | 107.3 (3) | N11—C15—C14 | 120.7 (4) |
O1—C1—C2 | 110.7 (3) | N11—C15—H15 | 119.7 |
C3—C1—C2 | 112.1 (3) | C14—C15—H15 | 119.7 |
C5—C1—C2 | 110.0 (3) | C16ii—C16—C13 | 124.9 (5) |
O3—C2—O2 | 124.3 (4) | C16ii—C16—H16 | 117.5 |
O3—C2—C1 | 117.7 (3) | C13—C16—H16 | 117.5 |
O2—C2—C1 | 118.0 (3) | H1WA—O1W—H1WB | 108 (5) |
C4—C3—C1 | 115.6 (3) | ||
O9—Zn1—O1—C1 | 2.9 (6) | O1—C1—C3—C4 | −52.5 (5) |
O6i—Zn1—O1—C1 | 125.2 (2) | C5—C1—C3—C4 | −170.6 (3) |
O8—Zn1—O1—C1 | −140.8 (2) | C2—C1—C3—C4 | 68.5 (4) |
O2—Zn1—O1—C1 | 32.6 (2) | Zn1—O4—C4—O5 | −147.6 (3) |
O4—Zn1—O1—C1 | −55.5 (2) | Zn1—O4—C4—C3 | 33.9 (6) |
O9—Zn1—O2—C2 | 148.1 (3) | C1—C3—C4—O4 | −11.8 (6) |
O6i—Zn1—O2—C2 | −108.9 (3) | C1—C3—C4—O5 | 169.6 (4) |
O4—Zn1—O2—C2 | 55.8 (3) | O1—C1—C5—C6 | 55.0 (5) |
O1—Zn1—O2—C2 | −25.9 (3) | C3—C1—C5—C6 | 170.4 (4) |
O9—Zn1—O4—C4 | −170.7 (4) | C2—C1—C5—C6 | −67.4 (4) |
O6i—Zn1—O4—C4 | 1.6 (7) | Zn1i—O6—C6—O7 | 5.5 (7) |
O8—Zn1—O4—C4 | 95.3 (4) | Zn1i—O6—C6—C5 | −171.6 (3) |
O2—Zn1—O4—C4 | −78.3 (4) | C1—C5—C6—O7 | 152.2 (4) |
O1—Zn1—O4—C4 | −0.9 (3) | C1—C5—C6—O6 | −30.6 (5) |
Zn1—O1—C1—C3 | 86.9 (3) | C15—N11—C11—C12 | 0.5 (7) |
Zn1—O1—C1—C5 | −157.0 (2) | N11—C11—C12—C13 | 0.4 (7) |
Zn1—O1—C1—C2 | −35.0 (3) | C11—C12—C13—C14 | −1.2 (7) |
Zn1—O2—C2—O3 | −164.3 (3) | C11—C12—C13—C16 | 176.8 (4) |
Zn1—O2—C2—C1 | 13.4 (4) | C12—C13—C14—C15 | 1.2 (7) |
O1—C1—C2—O3 | −165.1 (3) | C16—C13—C14—C15 | −176.9 (4) |
C3—C1—C2—O3 | 76.4 (4) | C11—N11—C15—C14 | −0.5 (7) |
C5—C1—C2—O3 | −42.9 (5) | C13—C14—C15—N11 | −0.4 (7) |
O1—C1—C2—O2 | 17.0 (5) | C14—C13—C16—C16ii | −173.2 (6) |
C3—C1—C2—O2 | −101.5 (4) | C12—C13—C16—C16ii | 8.8 (9) |
C5—C1—C2—O2 | 139.2 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y, −z+2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O6 | 0.93 (1) | 1.80 (2) | 2.626 (4) | 146 (4) |
O5—H5···N11iii | 0.84 | 1.81 | 2.633 (5) | 168 |
O8—H8B···O5iii | 0.86 (1) | 1.88 (1) | 2.733 (5) | 173 (5) |
O8—H8A···O7i | 0.86 (1) | 2.58 (4) | 3.031 (4) | 114 (4) |
O8—H8A···O7iv | 0.86 (1) | 2.04 (2) | 2.866 (4) | 161 (5) |
O9—H9B···O1Wiv | 0.86 (1) | 1.87 (1) | 2.725 (5) | 179 (5) |
O9—H9A···O3v | 0.86 (1) | 2.57 (4) | 3.145 (5) | 125 (4) |
O9—H9A···O2v | 0.86 (1) | 2.01 (1) | 2.860 (5) | 168 (5) |
O1W—H1WA···O3 | 0.96 (1) | 1.88 (1) | 2.838 (5) | 172 (5) |
O1W—H1WB···O7vi | 0.96 (1) | 2.04 (3) | 2.880 (5) | 145 (4) |
C14—H14···O9i | 0.95 | 2.58 | 3.474 (5) | 158 |
C12—H12···O3vii | 0.95 | 2.52 | 3.390 (5) | 152 |
C11—H11···O4iii | 0.95 | 2.52 | 3.132 (5) | 122 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (iii) −x+1, −y+1, −z+2; (iv) x, y+1, z; (v) −x+2, −y+1, −z+1; (vi) −x+1, −y, −z+1; (vii) −x+1, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Zn2(C6H6O7)2(H2O)4]·C12H10N2·2H2O |
Mr | 801.31 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 170 |
a, b, c (Å) | 9.4360 (19), 9.4540 (19), 10.098 (2) |
α, β, γ (°) | 66.87 (3), 70.19 (3), 75.91 (3) |
V (Å3) | 773.0 (3) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 1.64 |
Crystal size (mm) | 0.30 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 1997) |
Tmin, Tmax | 0.638, 0.853 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4216, 2924, 2382 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.140, 1.09 |
No. of reflections | 2924 |
No. of parameters | 239 |
No. of restraints | 7 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.77, −1.36 |
Computer programs: SMART (Bruker, 1997), SAINT (Bruker, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O···O6 | 0.930 (2) | 1.80 (2) | 2.626 (4) | 146 (4) |
O5—H5···N11i | 0.84 | 1.81 | 2.633 (5) | 168 |
O8—H8B···O5i | 0.860 (2) | 1.877 (8) | 2.733 (5) | 173 (5) |
O8—H8A···O7ii | 0.860 (2) | 2.040 (17) | 2.866 (4) | 161 (5) |
O9—H9B···O1Wii | 0.860 (2) | 1.865 (5) | 2.725 (5) | 179 (5) |
O9—H9A···O3iii | 0.860 (2) | 2.57 (4) | 3.145 (5) | 125 (4) |
O9—H9A···O2iii | 0.860 (2) | 2.013 (12) | 2.860 (5) | 168 (5) |
O1W—H1WA···O3 | 0.960 (2) | 1.884 (10) | 2.838 (5) | 172 (5) |
O1W—H1WB···O7iv | 0.960 (2) | 2.04 (3) | 2.880 (5) | 145 (4) |
Symmetry codes: (i) −x+1, −y+1, −z+2; (ii) x, y+1, z; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y, −z+1. |
Acknowledgements
Financial support from Forest Science and Technology Projects (grant No. S121012L080111) and the Converging Research Center Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education, Science and Technology (grant No. 2012001725) is gratefully acknowledged.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Citric acid has often been used as a model ligand to examine the interaction between transition metal ions with biologically active molecules (Daniele et al., 2008; Parkin, 2004; Tshuva & Lippard, 2004; Stoumpos et al., 2009). Recently, our group has also reported a novel compound from the reaction of manganese(II) nitrate as a building block and citric acid as a ligand (Hwang et al., 2012). In order to study the effects of secondary metal ions on the interaction between transition metal ions and citric acid (Shin et al., 2009; Yu et al., 2009; Kim et al., 2011), we have employed zinc as a metal ion source. We report here the structure of [Zn2(H2O)4(C6H8O7)2].C12H10N2.2H2O.
In the structure of the title compound (Fig. 1) the asymmetric unit contains half of a centrosymmetric complex dimer, half of a 1,2-bis(pyridin-4-yl)ethene molecule which lies across an inversion centre and one water molecule. Carboxylate groups of two dianionic citrate ligands bridge two ZnII ions giving the cyclic dimer, with each ZnO6centre coordinated by four O atoms from the ligand (one hydroxyl and three carboxyl) and two water O atoms, forming a distorted octahedral environment [Zn—O, 2.040 (3)–2.244 (3) Å]. In the crystal, O—H—O and O—H···N hydrogen bonds involving hydroxyl groups and both coordinated and solvent water molecules (Table 1) link the dimers giving a three-dimensional framework structure. The crystal structure is further stabilized by weak intermolecular π–π interactions involving the 1,2-bis(pyridin-4-yl)ethene molecule [centroid = C11–C15/N11; ring centroid separation = 3.97 (7) Å; symmetry code: -x, -y + 1, -z + 2].