organic compounds
4-Aminopyridinium 2-chloro-4-nitrobenzoate monohydrate
aMolecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg, PO Wits 2050, South Africa
*Correspondence e-mail: andreas.lemmerer@wits.ac.za
In the title hydrated molecular salt, C5H7N2+·C7H3ClNO4−·H2O, the ions and water molecules assemble into ribbons of R65(22) rings along the c axis via O(water)—H⋯O−, N+—H⋯O(water) and N—H⋯O− hydrogen bonds. N—H⋯O− hydrogen bonds connect adjacent ribbons along the c-axis direction via R44(12) rings, forming hydrogen-bonded layers. The CO2 and NO2 groups make dihedral angles of 81.8 (2) and 1.4 (2)°, respectively, with the ring in the anion.
Related literature
For related structures, see: Lemmerer et al. (2010). For graph-set notation, see: Bernstein et al. (1995).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2005); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus and XPREP (Bruker 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: WinGX (Farrugia, 2012) and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536812046077/fy2073sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812046077/fy2073Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812046077/fy2073Isup3.mol
Supporting information file. DOI: 10.1107/S1600536812046077/fy2073Isup4.cml
Crystals were grown by slow evaporation of a methanol solution of 2-chloro-4-nitrobenzoic acid (0.100 g; 0.496 mmol) and 4-aminopyridine (0.047 g; 0.50 mmol) in 8 ml of methanol, and afforded colourless plates after three days of slow evaporation at ambient conditions.
The aromatic C-bound H atoms were geometrically placed with C—H bond lengths of 0.95 Å, and were refined as riding with Uiso(H) = 1.2Ueq(C). The O-bound H atoms of the water molecule and the N-bound H atoms were located in the difference map and their coordinates as well as isotropic displacement parameters were refined freely. The residual electron density around the O atom of the water molecule was found to not correspond to any H atoms by inspection of the hydrogen bonding geometry.
Data collection: APEX2 (Bruker, 2005); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus and XPREP (Bruker 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: WinGX (Farrugia, 2012) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of (I) showing the atomic numbering scheme. Displacement ellipsoids are shown at the 50% probability level. | |
Fig. 2. Hydrogen bonding diagram of (I) showing the R56(22) rings to form ribbons. Intermolecular hydrogen bonds are shown as dashed red lines forming dimers. Atoms with superscrips (i) and (ii) are at the symmetry positions (x, y, z - 1) and (x, -y + 1/2, z - 1/2) respectively. | |
Fig. 3. The layers form by combining the one-dimensional ribbons using R44(12) rings. |
C5H7N2+·C7H3ClNO4−·H2O | F(000) = 648 |
Mr = 313.7 | Dx = 1.453 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 4262 reflections |
a = 14.4500 (5) Å | θ = 2.8–27.8° |
b = 14.3300 (5) Å | µ = 0.29 mm−1 |
c = 6.9918 (2) Å | T = 173 K |
β = 97.804 (2)° | Plate, colourless |
V = 1434.37 (8) Å3 | 0.78 × 0.31 × 0.09 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 2685 reflections with I > 2σ(I) |
ω scans | Rint = 0.061 |
Absorption correction: integration (XPREP; Bruker, 2004) | θmax = 28°, θmin = 1.4° |
Tmin = 0.896, Tmax = 0.977 | h = −19→19 |
14928 measured reflections | k = −18→18 |
3456 independent reflections | l = −8→9 |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.043 | w = 1/[σ2(Fo2) + (0.0662P)2 + 0.1397P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.122 | (Δ/σ)max < 0.001 |
S = 1.04 | Δρmax = 0.5 e Å−3 |
3456 reflections | Δρmin = −0.36 e Å−3 |
210 parameters |
C5H7N2+·C7H3ClNO4−·H2O | V = 1434.37 (8) Å3 |
Mr = 313.7 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 14.4500 (5) Å | µ = 0.29 mm−1 |
b = 14.3300 (5) Å | T = 173 K |
c = 6.9918 (2) Å | 0.78 × 0.31 × 0.09 mm |
β = 97.804 (2)° |
Bruker APEXII CCD area-detector diffractometer | 3456 independent reflections |
Absorption correction: integration (XPREP; Bruker, 2004) | 2685 reflections with I > 2σ(I) |
Tmin = 0.896, Tmax = 0.977 | Rint = 0.061 |
14928 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.5 e Å−3 |
3456 reflections | Δρmin = −0.36 e Å−3 |
210 parameters |
Experimental. Numerical integration absorption corrections based on indexed crystal faces were applied using the XPREP routine (Bruker, 2004) |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.69246 (11) | 0.61389 (11) | 0.2594 (2) | 0.0261 (3) | |
C2 | 0.61757 (12) | 0.55610 (11) | 0.2858 (2) | 0.0271 (3) | |
C3 | 0.52758 (11) | 0.57500 (11) | 0.2008 (2) | 0.0284 (3) | |
H3 | 0.4772 | 0.5348 | 0.2188 | 0.034* | |
C4 | 0.51347 (11) | 0.65438 (12) | 0.0887 (2) | 0.0290 (4) | |
C5 | 0.58469 (12) | 0.71419 (12) | 0.0592 (2) | 0.0325 (4) | |
H5 | 0.5725 | 0.7687 | −0.0176 | 0.039* | |
C6 | 0.67437 (12) | 0.69317 (12) | 0.1438 (2) | 0.0311 (4) | |
H6 | 0.7245 | 0.7332 | 0.1232 | 0.037* | |
C7 | 0.79130 (11) | 0.59307 (11) | 0.3515 (2) | 0.0291 (3) | |
N1 | 0.41775 (10) | 0.67644 (11) | 0.0004 (2) | 0.0349 (3) | |
O1 | 0.84325 (9) | 0.55490 (9) | 0.24589 (19) | 0.0412 (3) | |
O2 | 0.81313 (9) | 0.61801 (10) | 0.52270 (17) | 0.0424 (3) | |
O3 | 0.35519 (9) | 0.62315 (10) | 0.0282 (2) | 0.0462 (3) | |
O4 | 0.40575 (10) | 0.74821 (11) | −0.0962 (2) | 0.0513 (4) | |
Cl1 | 0.63660 (3) | 0.45679 (3) | 0.42817 (7) | 0.04119 (15) | |
C8 | 0.96351 (14) | 0.15836 (13) | 0.3659 (2) | 0.0361 (4) | |
H8 | 1.0019 | 0.1049 | 0.3936 | 0.043* | |
C9 | 1.00312 (12) | 0.24412 (13) | 0.3780 (2) | 0.0341 (4) | |
H9 | 1.0687 | 0.2506 | 0.4123 | 0.041* | |
C10 | 0.94613 (12) | 0.32426 (12) | 0.3393 (2) | 0.0293 (4) | |
C11 | 0.84995 (12) | 0.30971 (12) | 0.2835 (2) | 0.0309 (4) | |
H11 | 0.8095 | 0.3614 | 0.2527 | 0.037* | |
C12 | 0.81509 (13) | 0.22161 (13) | 0.2739 (2) | 0.0352 (4) | |
H12 | 0.75 | 0.2124 | 0.237 | 0.042* | |
N2 | 0.87086 (12) | 0.14714 (11) | 0.3155 (2) | 0.0357 (3) | |
N3 | 0.98294 (12) | 0.40973 (11) | 0.3540 (2) | 0.0368 (4) | |
H2 | 0.8439 (17) | 0.0887 (18) | 0.322 (3) | 0.061 (7)* | |
H3A | 0.9432 (16) | 0.4610 (15) | 0.322 (3) | 0.045 (6)* | |
H3B | 1.0408 (17) | 0.4127 (15) | 0.391 (3) | 0.048 (6)* | |
O1W | 0.8108 (2) | 0.52435 (14) | 0.8618 (3) | 0.1094 (11) | |
H1W | 0.817 (2) | 0.541 (2) | 0.965 (5) | 0.080 (10)* | |
H2W | 0.806 (2) | 0.562 (2) | 0.781 (5) | 0.096 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0257 (8) | 0.0296 (8) | 0.0228 (7) | 0.0026 (6) | 0.0032 (6) | −0.0001 (6) |
C2 | 0.0310 (8) | 0.0261 (8) | 0.0245 (7) | 0.0017 (6) | 0.0048 (6) | 0.0017 (6) |
C3 | 0.0268 (8) | 0.0306 (8) | 0.0281 (8) | −0.0034 (6) | 0.0046 (6) | −0.0036 (6) |
C4 | 0.0241 (8) | 0.0377 (9) | 0.0244 (7) | 0.0046 (6) | 0.0007 (6) | −0.0018 (6) |
C5 | 0.0319 (9) | 0.0339 (9) | 0.0312 (8) | 0.0036 (7) | 0.0030 (7) | 0.0082 (7) |
C6 | 0.0265 (9) | 0.0340 (9) | 0.0325 (8) | −0.0007 (7) | 0.0033 (6) | 0.0062 (7) |
C7 | 0.0260 (8) | 0.0281 (8) | 0.0319 (8) | 0.0004 (6) | −0.0007 (6) | 0.0059 (6) |
N1 | 0.0256 (8) | 0.0466 (9) | 0.0316 (7) | 0.0043 (6) | −0.0001 (6) | −0.0049 (7) |
O1 | 0.0307 (7) | 0.0477 (8) | 0.0437 (7) | 0.0115 (6) | −0.0002 (5) | −0.0040 (6) |
O2 | 0.0367 (7) | 0.0580 (8) | 0.0302 (6) | −0.0009 (6) | −0.0039 (5) | −0.0001 (6) |
O3 | 0.0254 (7) | 0.0589 (9) | 0.0530 (8) | −0.0023 (6) | 0.0004 (6) | −0.0042 (7) |
O4 | 0.0382 (8) | 0.0584 (9) | 0.0541 (8) | 0.0136 (7) | −0.0054 (6) | 0.0154 (7) |
Cl1 | 0.0433 (3) | 0.0341 (2) | 0.0463 (3) | 0.00160 (18) | 0.0065 (2) | 0.01473 (18) |
C8 | 0.0429 (11) | 0.0369 (9) | 0.0287 (8) | 0.0107 (8) | 0.0059 (7) | 0.0010 (7) |
C9 | 0.0295 (9) | 0.0400 (10) | 0.0323 (8) | 0.0069 (7) | 0.0027 (7) | 0.0002 (7) |
C10 | 0.0306 (9) | 0.0360 (9) | 0.0214 (7) | 0.0035 (7) | 0.0037 (6) | −0.0002 (6) |
C11 | 0.0282 (9) | 0.0381 (9) | 0.0262 (8) | 0.0056 (7) | 0.0033 (6) | 0.0018 (7) |
C12 | 0.0316 (9) | 0.0472 (10) | 0.0266 (8) | −0.0011 (7) | 0.0030 (7) | 0.0004 (7) |
N2 | 0.0440 (9) | 0.0359 (8) | 0.0275 (7) | −0.0008 (7) | 0.0060 (6) | 0.0002 (6) |
N3 | 0.0289 (8) | 0.0361 (8) | 0.0435 (9) | 0.0021 (7) | −0.0018 (7) | −0.0013 (7) |
O1W | 0.249 (4) | 0.0447 (10) | 0.0407 (10) | 0.0464 (14) | 0.0425 (14) | 0.0092 (9) |
C1—C2 | 1.395 (2) | C8—N2 | 1.347 (2) |
C1—C6 | 1.398 (2) | C8—C9 | 1.353 (3) |
C1—C7 | 1.515 (2) | C8—H8 | 0.95 |
C2—C3 | 1.381 (2) | C9—C10 | 1.418 (2) |
C2—Cl1 | 1.7369 (16) | C9—H9 | 0.95 |
C3—C4 | 1.381 (2) | C10—N3 | 1.334 (2) |
C3—H3 | 0.95 | C10—C11 | 1.407 (2) |
C4—C5 | 1.376 (2) | C11—C12 | 1.358 (2) |
C4—N1 | 1.471 (2) | C11—H11 | 0.95 |
C5—C6 | 1.383 (2) | C12—N2 | 1.345 (2) |
C5—H5 | 0.95 | C12—H12 | 0.95 |
C6—H6 | 0.95 | N2—H2 | 0.93 (3) |
C7—O2 | 1.248 (2) | N3—H3A | 0.94 (2) |
C7—O1 | 1.248 (2) | N3—H3B | 0.84 (2) |
N1—O3 | 1.219 (2) | O1W—H1W | 0.75 (3) |
N1—O4 | 1.230 (2) | O1W—H2W | 0.78 (4) |
C2—C1—C6 | 118.13 (15) | O4—N1—C4 | 117.71 (15) |
C2—C1—C7 | 122.05 (14) | N2—C8—C9 | 121.43 (16) |
C6—C1—C7 | 119.83 (14) | N2—C8—H8 | 119.3 |
C3—C2—C1 | 121.91 (15) | C9—C8—H8 | 119.3 |
C3—C2—Cl1 | 118.28 (12) | C8—C9—C10 | 119.60 (17) |
C1—C2—Cl1 | 119.80 (12) | C8—C9—H9 | 120.2 |
C4—C3—C2 | 117.63 (15) | C10—C9—H9 | 120.2 |
C4—C3—H3 | 121.2 | N3—C10—C11 | 121.74 (16) |
C2—C3—H3 | 121.2 | N3—C10—C9 | 120.92 (16) |
C5—C4—C3 | 122.84 (15) | C11—C10—C9 | 117.33 (16) |
C5—C4—N1 | 118.88 (15) | C12—C11—C10 | 119.83 (16) |
C3—C4—N1 | 118.27 (15) | C12—C11—H11 | 120.1 |
C4—C5—C6 | 118.46 (15) | C10—C11—H11 | 120.1 |
C4—C5—H5 | 120.8 | N2—C12—C11 | 121.31 (17) |
C6—C5—H5 | 120.8 | N2—C12—H12 | 119.3 |
C5—C6—C1 | 121.02 (16) | C11—C12—H12 | 119.3 |
C5—C6—H6 | 119.5 | C12—N2—C8 | 120.46 (16) |
C1—C6—H6 | 119.5 | C12—N2—H2 | 118.9 (15) |
O2—C7—O1 | 126.79 (16) | C8—N2—H2 | 120.3 (15) |
O2—C7—C1 | 116.89 (15) | C10—N3—H3A | 118.3 (13) |
O1—C7—C1 | 116.28 (14) | C10—N3—H3B | 116.1 (15) |
O3—N1—O4 | 124.01 (15) | H3A—N3—H3B | 126 (2) |
O3—N1—C4 | 118.28 (15) | H1W—O1W—H2W | 117 (3) |
C6—C1—C2—C3 | 0.4 (2) | C2—C1—C7—O1 | 99.31 (18) |
C7—C1—C2—C3 | −179.64 (14) | C6—C1—C7—O1 | −80.7 (2) |
C6—C1—C2—Cl1 | 179.99 (12) | C5—C4—N1—O3 | −179.69 (15) |
C7—C1—C2—Cl1 | 0.0 (2) | C3—C4—N1—O3 | −0.8 (2) |
C1—C2—C3—C4 | −0.6 (2) | C5—C4—N1—O4 | −0.2 (2) |
Cl1—C2—C3—C4 | 179.75 (12) | C3—C4—N1—O4 | 178.68 (15) |
C2—C3—C4—C5 | 0.1 (2) | N2—C8—C9—C10 | 0.8 (3) |
C2—C3—C4—N1 | −178.79 (14) | C8—C9—C10—N3 | 178.61 (16) |
C3—C4—C5—C6 | 0.8 (3) | C8—C9—C10—C11 | −1.9 (2) |
N1—C4—C5—C6 | 179.59 (14) | N3—C10—C11—C12 | −178.78 (16) |
C4—C5—C6—C1 | −1.0 (3) | C9—C10—C11—C12 | 1.8 (2) |
C2—C1—C6—C5 | 0.5 (2) | C10—C11—C12—N2 | −0.5 (2) |
C7—C1—C6—C5 | −179.52 (15) | C11—C12—N2—C8 | −0.8 (2) |
C2—C1—C7—O2 | −82.6 (2) | C9—C8—N2—C12 | 0.6 (2) |
C6—C1—C7—O2 | 97.40 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1Wi | 0.93 (3) | 1.72 (3) | 2.641 (2) | 170 (2) |
N3—H3A···O1 | 0.94 (2) | 1.99 (2) | 2.926 (2) | 171.1 (19) |
N3—H3B···O2ii | 0.84 (2) | 2.16 (3) | 2.982 (2) | 165 (2) |
O1W—H1W···O1iii | 0.75 (3) | 1.96 (3) | 2.698 (2) | 166 (3) |
O1W—H2W···O2 | 0.78 (4) | 1.99 (4) | 2.729 (2) | 158 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+2, −y+1, −z+1; (iii) x, y, z+1. |
Experimental details
Crystal data | |
Chemical formula | C5H7N2+·C7H3ClNO4−·H2O |
Mr | 313.7 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 173 |
a, b, c (Å) | 14.4500 (5), 14.3300 (5), 6.9918 (2) |
β (°) | 97.804 (2) |
V (Å3) | 1434.37 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.29 |
Crystal size (mm) | 0.78 × 0.31 × 0.09 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Integration (XPREP; Bruker, 2004) |
Tmin, Tmax | 0.896, 0.977 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14928, 3456, 2685 |
Rint | 0.061 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.122, 1.04 |
No. of reflections | 3456 |
No. of parameters | 210 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.5, −0.36 |
Computer programs: APEX2 (Bruker, 2005), SAINT-Plus (Bruker, 2004), SAINT-Plus and XPREP (Bruker 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1999), WinGX (Farrugia, 2012) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O1Wi | 0.93 (3) | 1.72 (3) | 2.641 (2) | 170 (2) |
N3—H3A···O1 | 0.94 (2) | 1.99 (2) | 2.926 (2) | 171.1 (19) |
N3—H3B···O2ii | 0.84 (2) | 2.16 (3) | 2.982 (2) | 165 (2) |
O1W—H1W···O1iii | 0.75 (3) | 1.96 (3) | 2.698 (2) | 166 (3) |
O1W—H2W···O2 | 0.78 (4) | 1.99 (4) | 2.729 (2) | 158 (3) |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x+2, −y+1, −z+1; (iii) x, y, z+1. |
Acknowledgements
This work was supported by the University of the Witwatersrand and the Molecular Sciences Institute, which are thanked for providing the infrastructure required to do this work, and the Friedel Sellshop grant for financial support.
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 35, 1555–1573. CrossRef Web of Science Google Scholar
Brandenburg, K. (1999). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2004). SAINT-Plus and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2005). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Lemmerer, A., Esterhuysen, C. & Bernstein, J. (2010). J. Pharm. Sci. 99, 4054–4071. Web of Science CAS PubMed Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title molecular salt is part of a larger research project looking at the factors that determine if a salt or a co-crystal forms between a specific carboxylic acid and various pyridine ring systems (Lemmerer et al., 2010).
In molecular salt (I) (Fig. 1), formed by dissolving 4-aminopyridine and 2-chloro-4-nitrobenzoic acid in methanol, two kinds of hydrogen-bonded rings are formed. The ring R56(22) (Bernstein et al., 1995) uses O1W—H···O-, N+—H···O and N—H···O- hydrogen bonds to connect all three species together into a 1-D ribbon (Fig. 2) along the c-axis. In addition, a R44(12) ring is formed between two amine groups and two carboxylate groups to connect two ribbons together to form layers (Fig. 3).