organic compounds
1-[(3,5-Dimethyl-1H-pyrazol-1-yl)carbonyl]-5-methylindolizine-3-carbonitrile
aDepartment of Applied Chemistry, Nanjing Normal University, Nanjing 210097, People's Republic of China, and bKey Laboratory of Applied Photochemistry, Nanjing Normal University, Nanjing 210097, People's Republic of China
*Correspondence e-mail: guweijin2010@163.com
In the title molecule, C16H14N4O, the indolizine ring system is essentially planar, with a maximum deviation of 0.013 (3) Å, and forms a dihedral angle of 7.52 (12)° with the pyrazole ring. In the crystal, weak C—H⋯O hydrogen bonds and π–π stacking interactions, with a centroid–centroid distance of 3.6378 (16) Å, link molecules along [001].
Related literature
For biological applications of indolizines and pyrazoles, see: Tukulula et al. (2010); James et al. (2008); Teklu et al. (2005); McDonald et al. (2006); Jagerovic et al. (2002). For background and the synthesis of related hetrocycles, see: Gu et al. (2011); Shen et al. (2006, 2008); Wang, et al. (2000).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2000); cell SAINT (Bruker, 2000); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536812046727/lh5554sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812046727/lh5554Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812046727/lh5554Isup3.cml
Methyl-3-cyano-5-methylindolizine-1-carboxylate was prepared through 1,3-dipolar
according to a procedure described in the literature (Wang, et al., 2000). A suspension of N-cyano-2-methylpyridinium bromide (C5H4N+CH3CN.Br-) (10 mmol), ethyl acrylate (40 mmol), Et3N (20 ml) and CrO3 (20 mmol) in DMF (40 ml) was stirred at 363K for 4 h (monitored by TLC). The mixture was cooled to room temperature and poured into 5% aqueous HCl (150 mL). The brown powder was collected by filtration and washed with ethanol (25 mL). After drying the solid was collected 1.28 g (60%).Methyl-3-cyano-5-methylindolizine-1-carboxylate (5 mmol) was dissolved in 6 ml of ethanol and 20 ml 80% N2H4.H2O (30 mmol) was added dropwise. The solution was refluxed for 6 h and cooled to yield the product, 0.87 g (81%) as 3-cyano-5-methylindolizine-1-carbohydrazide.
3-cyano-5-methylindolizine-1-carbohydrazide (1 mmol) was dissolved in 2 ml acetic acid, then acetylacetone (2 mmol, dissolved in 2ml ethanol) was added. After stirring for 2 h, the mixture was purified by
[silica gel, 20% ethyl acetate in petroleum ether (60 C90)] to yield colorless block crystals of the title compound, 0.22 g (79%). 1H-NMR (CDCl3, 400 MHz): 2.33 (s, 3H, –CH3), 2.65 (s, 3H, –CH3), 3.06 (s, 3H, –CH3), 6.06 (s, 1H, pyrazole =CH), 6.80 (d, 1H, indolizine =CH), 7.33 (t, 1H, indolizine =CH), 8.52 (d, 1H, indolizine =CH), 8.59 (s, 1H, indolizine =CH).H atoms were placed in calculated positions and allowed to ride, with C—H = 0.93 and 0.96Å and Uiso(H) = 1.2Ueq(C) or 1.2Ueq(Cmethyl). The distance for C8—C9 was restrained with the command DFIX 1.4 0.01 C8 C9 in SHELXL (Sheldrick, 2008).
Data collection: SMART (Bruker, 2000); cell
SAINT (Bruker, 2000); data reduction: SAINT (Bruker, 2000); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C16H14N4O | F(000) = 584 |
Mr = 278.31 | Dx = 1.337 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1864 reflections |
a = 8.5911 (18) Å | θ = 2.1–23.1° |
b = 23.3760 (15) Å | µ = 0.09 mm−1 |
c = 7.5816 (12) Å | T = 291 K |
β = 114.775 (3)° | Block, colorless |
V = 1382.4 (4) Å3 | 0.30 × 0.25 × 0.20 mm |
Z = 4 |
Bruker SMART APEX diffractometer | 2361 independent reflections |
Radiation source: sealed tube | 1728 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
ϕ and ω scans | θmax = 25.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | h = −10→10 |
Tmin = 0.974, Tmax = 0.983 | k = −27→27 |
7822 measured reflections | l = −8→7 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.048 | H-atom parameters constrained |
wR(F2) = 0.135 | w = 1/[σ2(Fo2) + (0.0667P)2 + 0.2279P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
2361 reflections | Δρmax = 0.19 e Å−3 |
194 parameters | Δρmin = −0.15 e Å−3 |
1 restraint | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: none |
C16H14N4O | V = 1382.4 (4) Å3 |
Mr = 278.31 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.5911 (18) Å | µ = 0.09 mm−1 |
b = 23.3760 (15) Å | T = 291 K |
c = 7.5816 (12) Å | 0.30 × 0.25 × 0.20 mm |
β = 114.775 (3)° |
Bruker SMART APEX diffractometer | 2361 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2000) | 1728 reflections with I > 2σ(I) |
Tmin = 0.974, Tmax = 0.983 | Rint = 0.037 |
7822 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 1 restraint |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.19 e Å−3 |
2361 reflections | Δρmin = −0.15 e Å−3 |
194 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4078 (3) | 0.16105 (9) | 0.6276 (3) | 0.0539 (6) | |
C2 | 0.5673 (3) | 0.16955 (11) | 0.7688 (3) | 0.0674 (7) | |
H2 | 0.6342 | 0.1380 | 0.8292 | 0.081* | |
C3 | 0.6350 (3) | 0.22472 (11) | 0.8269 (4) | 0.0706 (7) | |
H3 | 0.7458 | 0.2291 | 0.9227 | 0.085* | |
C4 | 0.5393 (3) | 0.27142 (10) | 0.7437 (3) | 0.0610 (6) | |
H4 | 0.5835 | 0.3079 | 0.7834 | 0.073* | |
C5 | 0.3740 (3) | 0.26454 (9) | 0.5980 (3) | 0.0494 (5) | |
C6 | 0.2428 (2) | 0.30329 (9) | 0.4823 (3) | 0.0473 (5) | |
C7 | 0.1052 (3) | 0.27046 (9) | 0.3576 (3) | 0.0502 (5) | |
H7 | 0.0023 | 0.2849 | 0.2655 | 0.060* | |
C8 | 0.1454 (2) | 0.21350 (7) | 0.3920 (3) | 0.0495 (5) | |
C9 | 0.0408 (3) | 0.16786 (8) | 0.2894 (3) | 0.0572 (6) | |
C10 | 0.3329 (3) | 0.10310 (10) | 0.5630 (4) | 0.0698 (7) | |
H10A | 0.4101 | 0.0746 | 0.6440 | 0.105* | |
H10B | 0.3150 | 0.0971 | 0.4305 | 0.105* | |
H10C | 0.2253 | 0.1003 | 0.5727 | 0.105* | |
C11 | 0.2680 (3) | 0.36492 (10) | 0.5125 (3) | 0.0553 (6) | |
C12 | 0.1506 (3) | 0.46295 (9) | 0.3983 (3) | 0.0514 (5) | |
C13 | 0.0074 (3) | 0.48077 (9) | 0.2476 (3) | 0.0565 (6) | |
H13 | −0.0256 | 0.5186 | 0.2140 | 0.068* | |
C14 | −0.0831 (3) | 0.43187 (9) | 0.1502 (3) | 0.0524 (5) | |
C15 | −0.2500 (3) | 0.42892 (10) | −0.0234 (4) | 0.0673 (7) | |
H15A | −0.2309 | 0.4329 | −0.1389 | 0.101* | |
H15B | −0.3232 | 0.4592 | −0.0178 | 0.101* | |
H15C | −0.3035 | 0.3927 | −0.0256 | 0.101* | |
C16 | 0.2889 (3) | 0.49760 (11) | 0.5473 (4) | 0.0703 (7) | |
H16A | 0.2630 | 0.5375 | 0.5222 | 0.105* | |
H16B | 0.3963 | 0.4894 | 0.5418 | 0.105* | |
H16C | 0.2966 | 0.4882 | 0.6740 | 0.105* | |
N1 | 0.3117 (2) | 0.20945 (7) | 0.5412 (2) | 0.0481 (5) | |
N2 | −0.0540 (3) | 0.13371 (9) | 0.1932 (3) | 0.0792 (7) | |
N3 | 0.1439 (2) | 0.40334 (7) | 0.3880 (3) | 0.0505 (5) | |
N4 | −0.0015 (2) | 0.38486 (7) | 0.2341 (3) | 0.0543 (5) | |
O1 | 0.3936 (2) | 0.38496 (7) | 0.6446 (3) | 0.0837 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0572 (14) | 0.0536 (13) | 0.0514 (13) | 0.0122 (10) | 0.0232 (12) | 0.0077 (10) |
C2 | 0.0593 (15) | 0.0719 (17) | 0.0605 (16) | 0.0190 (12) | 0.0147 (14) | 0.0098 (12) |
C3 | 0.0499 (14) | 0.0874 (19) | 0.0578 (16) | 0.0108 (13) | 0.0061 (12) | 0.0002 (13) |
C4 | 0.0555 (14) | 0.0631 (14) | 0.0525 (14) | 0.0036 (11) | 0.0108 (12) | −0.0049 (11) |
C5 | 0.0492 (13) | 0.0542 (13) | 0.0434 (13) | 0.0025 (10) | 0.0179 (11) | −0.0012 (9) |
C6 | 0.0466 (12) | 0.0495 (12) | 0.0415 (12) | 0.0015 (9) | 0.0141 (10) | −0.0008 (9) |
C7 | 0.0452 (12) | 0.0535 (13) | 0.0452 (12) | 0.0017 (9) | 0.0125 (10) | 0.0023 (10) |
C8 | 0.0473 (12) | 0.0498 (13) | 0.0480 (13) | 0.0019 (9) | 0.0165 (11) | 0.0023 (9) |
C9 | 0.0535 (14) | 0.0513 (13) | 0.0578 (15) | −0.0016 (11) | 0.0145 (12) | 0.0037 (11) |
C10 | 0.0733 (16) | 0.0571 (15) | 0.0756 (18) | 0.0125 (12) | 0.0280 (14) | 0.0122 (12) |
C11 | 0.0493 (13) | 0.0569 (14) | 0.0483 (13) | −0.0009 (10) | 0.0092 (12) | −0.0052 (10) |
C12 | 0.0494 (13) | 0.0480 (12) | 0.0565 (13) | −0.0065 (10) | 0.0220 (11) | −0.0069 (10) |
C13 | 0.0534 (13) | 0.0433 (12) | 0.0677 (15) | 0.0006 (10) | 0.0205 (12) | 0.0015 (10) |
C14 | 0.0503 (12) | 0.0483 (12) | 0.0548 (14) | 0.0005 (10) | 0.0183 (11) | 0.0023 (10) |
C15 | 0.0541 (14) | 0.0627 (15) | 0.0688 (16) | 0.0000 (11) | 0.0096 (13) | 0.0040 (12) |
C16 | 0.0640 (15) | 0.0585 (15) | 0.0795 (18) | −0.0122 (11) | 0.0213 (14) | −0.0131 (12) |
N1 | 0.0475 (10) | 0.0517 (10) | 0.0441 (11) | 0.0068 (8) | 0.0181 (9) | 0.0030 (8) |
N2 | 0.0789 (15) | 0.0564 (13) | 0.0822 (16) | −0.0097 (11) | 0.0141 (13) | 0.0027 (11) |
N3 | 0.0496 (10) | 0.0445 (10) | 0.0497 (11) | −0.0015 (8) | 0.0134 (9) | −0.0016 (8) |
N4 | 0.0490 (10) | 0.0487 (10) | 0.0510 (11) | −0.0034 (8) | 0.0071 (9) | −0.0007 (8) |
O1 | 0.0668 (11) | 0.0636 (10) | 0.0771 (12) | −0.0006 (9) | −0.0126 (10) | −0.0156 (9) |
C1—C2 | 1.354 (3) | C10—H10B | 0.9600 |
C1—N1 | 1.392 (3) | C10—H10C | 0.9600 |
C1—C10 | 1.492 (3) | C11—O1 | 1.217 (3) |
C2—C3 | 1.407 (3) | C11—N3 | 1.411 (3) |
C2—H2 | 0.9300 | C12—C13 | 1.347 (3) |
C3—C4 | 1.353 (3) | C12—N3 | 1.395 (3) |
C3—H3 | 0.9300 | C12—C16 | 1.490 (3) |
C4—C5 | 1.396 (3) | C13—C14 | 1.405 (3) |
C4—H4 | 0.9300 | C13—H13 | 0.9300 |
C5—N1 | 1.392 (3) | C14—N4 | 1.315 (3) |
C5—C6 | 1.426 (3) | C14—C15 | 1.487 (3) |
C6—C7 | 1.394 (3) | C15—H15A | 0.9600 |
C6—C11 | 1.460 (3) | C15—H15B | 0.9600 |
C7—C8 | 1.373 (3) | C15—H15C | 0.9600 |
C7—H7 | 0.9300 | C16—H16A | 0.9600 |
C8—C9 | 1.4017 (10) | C16—H16B | 0.9600 |
C8—N1 | 1.405 (3) | C16—H16C | 0.9600 |
C9—N2 | 1.156 (2) | N3—N4 | 1.374 (2) |
C10—H10A | 0.9600 | ||
C2—C1—N1 | 117.2 (2) | O1—C11—N3 | 117.8 (2) |
C2—C1—C10 | 123.2 (2) | O1—C11—C6 | 122.1 (2) |
N1—C1—C10 | 119.6 (2) | N3—C11—C6 | 120.15 (19) |
C1—C2—C3 | 122.0 (2) | C13—C12—N3 | 105.07 (18) |
C1—C2—H2 | 119.0 | C13—C12—C16 | 129.0 (2) |
C3—C2—H2 | 119.0 | N3—C12—C16 | 125.9 (2) |
C4—C3—C2 | 120.2 (2) | C12—C13—C14 | 107.56 (19) |
C4—C3—H3 | 119.9 | C12—C13—H13 | 126.2 |
C2—C3—H3 | 119.9 | C14—C13—H13 | 126.2 |
C3—C4—C5 | 119.6 (2) | N4—C14—C13 | 111.09 (19) |
C3—C4—H4 | 120.2 | N4—C14—C15 | 120.68 (19) |
C5—C4—H4 | 120.2 | C13—C14—C15 | 128.2 (2) |
N1—C5—C4 | 118.9 (2) | C14—C15—H15A | 109.5 |
N1—C5—C6 | 107.16 (18) | C14—C15—H15B | 109.5 |
C4—C5—C6 | 133.9 (2) | H15A—C15—H15B | 109.5 |
C7—C6—C5 | 107.14 (19) | C14—C15—H15C | 109.5 |
C7—C6—C11 | 132.6 (2) | H15A—C15—H15C | 109.5 |
C5—C6—C11 | 120.22 (19) | H15B—C15—H15C | 109.5 |
C8—C7—C6 | 109.30 (19) | C12—C16—H16A | 109.5 |
C8—C7—H7 | 125.3 | C12—C16—H16B | 109.5 |
C6—C7—H7 | 125.3 | H16A—C16—H16B | 109.5 |
C7—C8—C9 | 125.51 (19) | C12—C16—H16C | 109.5 |
C7—C8—N1 | 107.97 (16) | H16A—C16—H16C | 109.5 |
C9—C8—N1 | 126.47 (18) | H16B—C16—H16C | 109.5 |
N2—C9—C8 | 174.1 (2) | C1—N1—C5 | 122.08 (18) |
C1—C10—H10A | 109.5 | C1—N1—C8 | 129.49 (17) |
C1—C10—H10B | 109.5 | C5—N1—C8 | 108.43 (16) |
H10A—C10—H10B | 109.5 | N4—N3—C12 | 111.28 (17) |
C1—C10—H10C | 109.5 | N4—N3—C11 | 122.09 (16) |
H10A—C10—H10C | 109.5 | C12—N3—C11 | 126.62 (18) |
H10B—C10—H10C | 109.5 | C14—N4—N3 | 105.00 (16) |
N1—C1—C2—C3 | −0.1 (3) | C10—C1—N1—C5 | 178.91 (19) |
C10—C1—C2—C3 | 179.9 (2) | C2—C1—N1—C8 | 179.34 (19) |
C1—C2—C3—C4 | 1.1 (4) | C10—C1—N1—C8 | −0.7 (3) |
C2—C3—C4—C5 | −0.9 (4) | C4—C5—N1—C1 | 1.2 (3) |
C3—C4—C5—N1 | −0.2 (3) | C6—C5—N1—C1 | −179.24 (16) |
C3—C4—C5—C6 | −179.6 (2) | C4—C5—N1—C8 | −179.07 (17) |
N1—C5—C6—C7 | −0.5 (2) | C6—C5—N1—C8 | 0.5 (2) |
C4—C5—C6—C7 | 178.9 (2) | C7—C8—N1—C1 | 179.42 (18) |
N1—C5—C6—C11 | 178.04 (17) | C9—C8—N1—C1 | −3.2 (3) |
C4—C5—C6—C11 | −2.5 (3) | C7—C8—N1—C5 | −0.2 (2) |
C5—C6—C7—C8 | 0.4 (2) | C9—C8—N1—C5 | 177.15 (19) |
C11—C6—C7—C8 | −177.9 (2) | C13—C12—N3—N4 | −0.3 (2) |
C6—C7—C8—C9 | −177.50 (19) | C16—C12—N3—N4 | 179.45 (18) |
C6—C7—C8—N1 | −0.1 (2) | C13—C12—N3—C11 | 178.35 (18) |
C7—C6—C11—O1 | 172.3 (2) | C16—C12—N3—C11 | −1.9 (3) |
C5—C6—C11—O1 | −5.8 (3) | O1—C11—N3—N4 | 179.5 (2) |
C7—C6—C11—N3 | −6.9 (3) | C6—C11—N3—N4 | −1.2 (3) |
C5—C6—C11—N3 | 175.01 (17) | O1—C11—N3—C12 | 1.0 (3) |
N3—C12—C13—C14 | 0.3 (2) | C6—C11—N3—C12 | −179.75 (18) |
C16—C12—C13—C14 | −179.5 (2) | C13—C14—N4—N3 | 0.0 (2) |
C12—C13—C14—N4 | −0.2 (3) | C15—C14—N4—N3 | −179.36 (18) |
C12—C13—C14—C15 | 179.1 (2) | C12—N3—N4—C14 | 0.2 (2) |
C2—C1—N1—C5 | −1.0 (3) | C11—N3—N4—C14 | −178.54 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.96 | 2.56 | 3.435 (4) | 151 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C16H14N4O |
Mr | 278.31 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 291 |
a, b, c (Å) | 8.5911 (18), 23.3760 (15), 7.5816 (12) |
β (°) | 114.775 (3) |
V (Å3) | 1382.4 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2000) |
Tmin, Tmax | 0.974, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7822, 2361, 1728 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.135, 1.05 |
No. of reflections | 2361 |
No. of parameters | 194 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.15 |
Computer programs: SMART (Bruker, 2000), SAINT (Bruker, 2000), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···O1i | 0.96 | 2.56 | 3.435 (4) | 151 |
Symmetry code: (i) x, −y+1/2, z−1/2. |
Acknowledgements
We thank the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) for financial support.
References
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Indolizines and pyrazoles are important classes of bio-active drug targets in the pharmaceutical industry, as they are the core structure of numerous biologically active compounds (Tukulula et al., 2010; James et al., 2008; Teklu et al., 2005; McDonald et al., 2006; Jagerovic et al., 2002). In our continuing studies on the synthesis and properties of heterocycles (Gu et al., 2011; Shen et al., 2008; Shen et al., 2006; Wang, et al., 2000) we have prepared (Fig. 1) and determined the crystal structure of the title compound.
The molecular structure of the title compound is shown in Fig. 2. The indolizine ring system is essentially planar with a maximum deviation for atom C3 of 0.013 (3)Å. The dihedral angle formed by the indolizine ring system and the pyrazole ring is 7.52 (12)°. In the crystal, weak C—H···O hydrogen bonds and π–π stacking interactions, with Cg1···Cg2i = 3.6378 (16)Å, link molecules along [001] (Fig. 3). Cg1 and Cg2 are the centroids of the N1/C5-C8 and N1/C1-C5 rings (symmetry code (i): x, 1/2-y, -1/2+z).