metal-organic compounds
Bis[1-benzyl-2-(1,3-thiazol-4-yl)-1H-benzimidazole-κ2N2,N3]dichloridocobalt(II)
aLaboratoire de Chimie Organique Hétérocyclique, URAC 21, Pôle de Compétences Pharmacochimie, Université Mohammed V-Agdal, BP 1014 Avenue Ibn Batouta, Rabat, Morocco, bInstitute of Nanomaterials and Nanotechnology, MAScIR, Avenue de l'Armée Royale, Rabat, Morocco, cLaboratoire de Chimie Organique Hétérocyclique, URAC 21, Faculté des Sciences, Université Mohammed V-Agdal, Avenue Ibn Battouta, BP 1014, Rabat, Morocco, dLaboratoire de Chimie de Coordination, Équipe Dendrimères et Hétérochimie, Toulouse, France, and eLaboratoire de Chimie du Solide Appliquée, Faculté des Sciences, Université Mohammed V-Agdal, Avenue Ibn Battouta, BP 1014, Rabat, Morocco
*Correspondence e-mail: h_gueddar@yahoo.fr
In the title compound, [CoCl2(C17H13N3S)2], the CoII atom exhibits a distorted octahedral coordination geometry involving two chloride ligands, one of which is split over two positions [refined site-occupancy ratio = 0.847 (18):0.153 (18)], and four N-atom donors from two 1-benzyl-2-(1,3-thiazol-4-yl)-1H-benzimidazole ligands. The two chelate rings including the CoII atom are essentially planar, the maximum deviations from the mean planes being 0.080 (2) and 0.046 (2) Å; the dihedral angle between them is 74.1 (1)°. In both ligands, the thiazole and benzimidazole rings are nearly coplanar, as indicated by the dihedral angles between their planes of 1.16 (8) and 6.29 (7)°. Each pendant benzene ring is almost perpendicular to the benzimidazole molecule to which it is attached; the dihedral angles between their planes are 75.94 (9) and 75.55 (10)°. The is stabilized by non-classical C—H⋯Cl hydrogen bonding forming a three-dimensional network.
Related literature
For background of the biochemical properties of thiabendazole [2-(4′-thiazolyl)benzimidazole], see: Devereux et al. (2007); Kowala et al. (1971); Yan-Jua & Guang-Ganga (2009).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536812048751/bt6860sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812048751/bt6860Isup2.hkl
Thiabendazole (1.22 g, 6.02 mmol) was dissolved in 20 ml of ethanol, and CoCl2.6H2O (0.48 g, 3.02 mmol) dissolved in 1 ml of water were added. After 3 days of stirring at room temperature, a single-crystal precipitated and was separated by filtration and dried at 333 K for 24 h.
The highest peak (2.04) and the deepest hole (-1.02) in the final Fourier map are at 0.92 Å and 0.65 Å from Cl2. The
of the structure in the P1 with a model has not led to the desired result. The splitting of one chlorine position (Cl2) in the centrosymmetric group and the of the occupancy rate of each position has led to a slight improvement of the and there is no longer remains electronic density near the chlorine. Indeed, the refined occupancy rate of Cl2a and Cl2b sites shows that the first is occupied at 91.8 (2) % and the remainder in the second site respectively. Now, the highest peak (O.95) and the deepest hole (-0.68) in the final Fourier map are at 0.82 Å and 0.68 Å from Co1. H atoms were located in a difference map and treated as riding with N—H = 0.86 Å, C—H = 0.93 Å (aromatic), and C—H = 0.97 Å (methylene). with Uiso(H) = 1.2 Ueq (aromatic, methylene).The thiabendazole or (2-(4'-thiazolyl)benzimidazole), is an antimicrobial drug belonging to the benzimidazole derivatives which are ubiquitous in biology and biomedicine (Devereux et al. 2007), Beside its biological properties, thiabendazole is an effective ligand to coordinate transition metal ions (Kowala et al., 1971; Yan-Jua and Guang-Ganga, 2009).
The
of the title compound, show that the CoII ion adopts a distorted octahedral coordination arising from two bidentate ligands and a two Cl- anion of which one (Cl2) is splited over two positions (Cl2a and Cl2b) and four nitrogen donors from the ligands. Indeed, the refined occupancy rate of Cl2a and Cl2b sites shows that the first is occupied at 95 (2) % and the remainder in the second site respectively (Fig.1). The two heterocyclic ligands (S1N1C1C2C3) and (N2N3C4 to C10); (S2N4C18C1920) and (N5N6C21 TO C27) are nearly coplanar with dihedral angles between them of 1.16 (8) ° and 6.26 (9)° respectively. The dihedral angle between the both thiabendazole molecules surrounding the cobalt atom is of 74.1 (1)°. Each benzene ring (C12 to C17 and C29 to C34) is virtually perpendicular to the benzimidazole molecule (N2N3C5 to C10 and N5N6C21 to C27) to which it is fixed and the dihedral angle between them is 75.94 (9) for the first system and 75.55 (10) for the second.The crystal strucrure is further stabilized by an intermolecular C—H···Cl no classic hydrogen bonds (Table 2).
For background of the biochemical properties of thiabendazole [2-(4'-thiazolyl)benzimidazole], see: Devereux et al. (2007); Kowala et al. (1971); Yan-Jua & Guang-Ganga (2009).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: PLATON (Spek, 2009) and publCIF (Westrip, 2010).Fig. 1. Molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. |
[CoCl2(C17H13N3S)2] | Z = 2 |
Mr = 712.56 | F(000) = 730 |
Triclinic, P1 | Dx = 1.530 Mg m−3 |
Hall symbol: -p 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.1311 (3) Å | Cell parameters from 6245 reflections |
b = 11.9582 (4) Å | θ = 5.1–26.4° |
c = 14.2633 (5) Å | µ = 0.90 mm−1 |
α = 76.033 (3)° | T = 193 K |
β = 75.536 (3)° | Block, pink |
γ = 69.707 (3)° | 0.40 × 0.40 × 0.20 mm |
V = 1546.43 (9) Å3 |
Bruker Kappa APEXII Quazar area-detector diffractometer | 6284 independent reflections |
Radiation source: microfocus sealed tube | 5601 reflections with I > 2σ(I) |
Multilayer optics monochromator | Rint = 0.011 |
φ and ω scans | θmax = 26.4°, θmin = 5.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→11 |
Tmin = 0.682, Tmax = 0.840 | k = −14→14 |
11578 measured reflections | l = −17→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H-atom parameters constrained |
wR(F2) = 0.080 | w = 1/[σ2(Fo2) + (0.0362P)2 + 1.3427P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
6284 reflections | Δρmax = 0.95 e Å−3 |
417 parameters | Δρmin = −0.68 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0040 (5) |
[CoCl2(C17H13N3S)2] | γ = 69.707 (3)° |
Mr = 712.56 | V = 1546.43 (9) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.1311 (3) Å | Mo Kα radiation |
b = 11.9582 (4) Å | µ = 0.90 mm−1 |
c = 14.2633 (5) Å | T = 193 K |
α = 76.033 (3)° | 0.40 × 0.40 × 0.20 mm |
β = 75.536 (3)° |
Bruker Kappa APEXII Quazar area-detector diffractometer | 6284 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5601 reflections with I > 2σ(I) |
Tmin = 0.682, Tmax = 0.840 | Rint = 0.011 |
11578 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | 0 restraints |
wR(F2) = 0.080 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.95 e Å−3 |
6284 reflections | Δρmin = −0.68 e Å−3 |
417 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.6603 (2) | 0.37010 (19) | 0.43804 (14) | 0.0281 (4) | |
H1 | 0.6306 | 0.4540 | 0.4409 | 0.034* | |
C2 | 0.7805 (2) | 0.1569 (2) | 0.44040 (15) | 0.0327 (4) | |
H2 | 0.8419 | 0.0759 | 0.4434 | 0.039* | |
C3 | 0.64845 (19) | 0.19650 (17) | 0.41692 (13) | 0.0223 (4) | |
C4 | 0.56253 (19) | 0.13517 (16) | 0.39322 (13) | 0.0214 (4) | |
C5 | 0.3835 (2) | 0.11633 (17) | 0.35002 (13) | 0.0236 (4) | |
C6 | 0.2527 (2) | 0.13165 (19) | 0.32592 (14) | 0.0289 (4) | |
H6 | 0.1811 | 0.2082 | 0.3214 | 0.035* | |
C7 | 0.2314 (3) | 0.0305 (2) | 0.30877 (15) | 0.0366 (5) | |
H7 | 0.1435 | 0.0381 | 0.2918 | 0.044* | |
C8 | 0.3360 (3) | −0.0824 (2) | 0.31586 (16) | 0.0388 (5) | |
H8 | 0.3176 | −0.1493 | 0.3027 | 0.047* | |
C9 | 0.4642 (3) | −0.09957 (19) | 0.34126 (15) | 0.0346 (5) | |
H9 | 0.5349 | −0.1765 | 0.3467 | 0.041* | |
C10 | 0.4850 (2) | 0.00220 (17) | 0.35870 (13) | 0.0260 (4) | |
C11 | 0.7263 (2) | −0.08140 (17) | 0.40841 (15) | 0.0301 (4) | |
H11A | 0.7035 | −0.1588 | 0.4266 | 0.036* | |
H11B | 0.7546 | −0.0691 | 0.4659 | 0.036* | |
C12 | 0.8512 (2) | −0.09147 (16) | 0.32447 (13) | 0.0226 (4) | |
C13 | 0.9687 (2) | −0.19429 (17) | 0.33241 (15) | 0.0292 (4) | |
H13 | 0.9665 | −0.2561 | 0.3884 | 0.035* | |
C14 | 1.0883 (2) | −0.20696 (19) | 0.25942 (18) | 0.0364 (5) | |
H14 | 1.1685 | −0.2774 | 0.2651 | 0.044* | |
C15 | 1.0916 (2) | −0.11754 (19) | 0.17831 (17) | 0.0345 (5) | |
H15 | 1.1748 | −0.1259 | 0.1285 | 0.041* | |
C16 | 0.9753 (2) | −0.01644 (18) | 0.16905 (15) | 0.0299 (4) | |
H16 | 0.9776 | 0.0445 | 0.1124 | 0.036* | |
C17 | 0.8548 (2) | −0.00304 (17) | 0.24201 (14) | 0.0256 (4) | |
H17 | 0.7744 | 0.0671 | 0.2355 | 0.031* | |
C18 | 0.0728 (2) | 0.47264 (19) | 0.31938 (17) | 0.0328 (4) | |
H18 | 0.0335 | 0.4909 | 0.3837 | 0.039* | |
C19 | 0.1212 (2) | 0.4361 (2) | 0.15296 (17) | 0.0370 (5) | |
H19 | 0.1224 | 0.4249 | 0.0890 | 0.044* | |
C20 | 0.2387 (2) | 0.41930 (17) | 0.18986 (15) | 0.0258 (4) | |
C21 | 0.3907 (2) | 0.38422 (16) | 0.14785 (13) | 0.0221 (4) | |
C22 | 0.61612 (19) | 0.34029 (15) | 0.14499 (13) | 0.0211 (4) | |
C23 | 0.7512 (2) | 0.31937 (16) | 0.16493 (14) | 0.0251 (4) | |
H23 | 0.7639 | 0.3202 | 0.2285 | 0.030* | |
C24 | 0.8657 (2) | 0.29749 (18) | 0.08846 (16) | 0.0314 (4) | |
H24 | 0.9593 | 0.2821 | 0.0999 | 0.038* | |
C25 | 0.8473 (2) | 0.29740 (19) | −0.00575 (16) | 0.0349 (5) | |
H25 | 0.9291 | 0.2818 | −0.0565 | 0.042* | |
C26 | 0.7144 (2) | 0.31922 (18) | −0.02687 (15) | 0.0308 (4) | |
H26 | 0.7020 | 0.3200 | −0.0909 | 0.037* | |
C27 | 0.5995 (2) | 0.34003 (16) | 0.05055 (14) | 0.0236 (4) | |
C28 | 0.3882 (2) | 0.37895 (18) | −0.02866 (14) | 0.0287 (4) | |
H28A | 0.4548 | 0.3952 | −0.0904 | 0.034* | |
H28B | 0.3003 | 0.4492 | −0.0273 | 0.034* | |
C29 | 0.3500 (2) | 0.26816 (18) | −0.02967 (14) | 0.0268 (4) | |
C30 | 0.3025 (3) | 0.2664 (2) | −0.11220 (17) | 0.0370 (5) | |
H30 | 0.2987 | 0.3317 | −0.1658 | 0.044* | |
C31 | 0.2607 (3) | 0.1699 (2) | −0.11673 (18) | 0.0454 (6) | |
H31 | 0.2260 | 0.1699 | −0.1728 | 0.055* | |
C32 | 0.2692 (3) | 0.0738 (2) | −0.04062 (18) | 0.0462 (6) | |
H32 | 0.2412 | 0.0071 | −0.0442 | 0.055* | |
C33 | 0.3181 (3) | 0.0742 (2) | 0.04040 (19) | 0.0531 (7) | |
H33 | 0.3247 | 0.0075 | 0.0929 | 0.064* | |
C34 | 0.3580 (3) | 0.1720 (2) | 0.04607 (17) | 0.0441 (6) | |
H34 | 0.3912 | 0.1721 | 0.1027 | 0.053* | |
N1 | 0.58202 (16) | 0.31923 (14) | 0.41412 (11) | 0.0224 (3) | |
N2 | 0.43504 (16) | 0.19849 (13) | 0.37231 (11) | 0.0208 (3) | |
N3 | 0.59824 (17) | 0.01613 (14) | 0.38752 (12) | 0.0253 (3) | |
N4 | 0.20969 (16) | 0.43936 (14) | 0.28531 (12) | 0.0253 (3) | |
N5 | 0.48317 (16) | 0.36795 (13) | 0.20426 (11) | 0.0208 (3) | |
N6 | 0.45439 (17) | 0.36890 (14) | 0.05423 (11) | 0.0240 (3) | |
S1 | 0.82050 (6) | 0.27380 (6) | 0.46385 (4) | 0.03746 (14) | |
S2 | −0.02965 (6) | 0.48051 (6) | 0.23841 (5) | 0.04537 (16) | |
Cl1 | 0.42867 (5) | 0.58768 (4) | 0.30588 (4) | 0.03220 (12) | |
Cl2A | 0.23855 (17) | 0.40676 (12) | 0.5152 (2) | 0.0232 (5) | 0.847 (18) |
Cl2B | 0.215 (2) | 0.444 (4) | 0.485 (2) | 0.060 (6) | 0.153 (18) |
Co1 | 0.39016 (2) | 0.39444 (2) | 0.355093 (18) | 0.02006 (8) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0262 (9) | 0.0369 (11) | 0.0278 (10) | −0.0143 (8) | −0.0031 (8) | −0.0125 (8) |
C2 | 0.0277 (10) | 0.0361 (11) | 0.0330 (11) | −0.0096 (8) | −0.0084 (8) | −0.0009 (9) |
C3 | 0.0231 (9) | 0.0251 (9) | 0.0182 (8) | −0.0092 (7) | −0.0003 (7) | −0.0038 (7) |
C4 | 0.0232 (9) | 0.0223 (9) | 0.0179 (8) | −0.0088 (7) | 0.0017 (7) | −0.0049 (7) |
C5 | 0.0313 (10) | 0.0254 (9) | 0.0181 (8) | −0.0162 (8) | 0.0022 (7) | −0.0066 (7) |
C6 | 0.0363 (11) | 0.0312 (10) | 0.0258 (9) | −0.0186 (9) | −0.0055 (8) | −0.0046 (8) |
C7 | 0.0499 (13) | 0.0449 (13) | 0.0290 (10) | −0.0316 (11) | −0.0084 (9) | −0.0051 (9) |
C8 | 0.0610 (15) | 0.0334 (11) | 0.0332 (11) | −0.0302 (11) | −0.0008 (10) | −0.0107 (9) |
C9 | 0.0485 (13) | 0.0253 (10) | 0.0311 (10) | −0.0185 (9) | 0.0061 (9) | −0.0100 (8) |
C10 | 0.0327 (10) | 0.0243 (9) | 0.0213 (9) | −0.0140 (8) | 0.0049 (7) | −0.0070 (7) |
C11 | 0.0350 (11) | 0.0207 (9) | 0.0263 (10) | −0.0045 (8) | −0.0004 (8) | 0.0001 (7) |
C12 | 0.0255 (9) | 0.0199 (9) | 0.0240 (9) | −0.0066 (7) | −0.0052 (7) | −0.0066 (7) |
C13 | 0.0319 (10) | 0.0217 (9) | 0.0356 (11) | −0.0061 (8) | −0.0129 (8) | −0.0041 (8) |
C14 | 0.0229 (10) | 0.0282 (10) | 0.0582 (14) | −0.0025 (8) | −0.0070 (9) | −0.0161 (10) |
C15 | 0.0291 (10) | 0.0311 (11) | 0.0464 (12) | −0.0140 (9) | 0.0067 (9) | −0.0197 (9) |
C16 | 0.0362 (11) | 0.0258 (10) | 0.0290 (10) | −0.0139 (8) | 0.0027 (8) | −0.0092 (8) |
C17 | 0.0286 (10) | 0.0204 (9) | 0.0255 (9) | −0.0053 (7) | −0.0027 (8) | −0.0051 (7) |
C18 | 0.0215 (9) | 0.0289 (10) | 0.0474 (12) | −0.0078 (8) | −0.0027 (9) | −0.0087 (9) |
C19 | 0.0327 (11) | 0.0465 (13) | 0.0368 (11) | −0.0206 (10) | −0.0141 (9) | 0.0044 (10) |
C20 | 0.0253 (9) | 0.0224 (9) | 0.0333 (10) | −0.0118 (7) | −0.0085 (8) | −0.0014 (8) |
C21 | 0.0259 (9) | 0.0180 (8) | 0.0262 (9) | −0.0109 (7) | −0.0057 (7) | −0.0034 (7) |
C22 | 0.0242 (9) | 0.0151 (8) | 0.0238 (9) | −0.0072 (7) | −0.0014 (7) | −0.0040 (7) |
C23 | 0.0246 (9) | 0.0215 (9) | 0.0281 (9) | −0.0078 (7) | −0.0034 (7) | −0.0029 (7) |
C24 | 0.0247 (10) | 0.0253 (10) | 0.0404 (11) | −0.0075 (8) | −0.0003 (8) | −0.0047 (8) |
C25 | 0.0350 (11) | 0.0267 (10) | 0.0353 (11) | −0.0078 (8) | 0.0089 (9) | −0.0097 (8) |
C26 | 0.0409 (11) | 0.0238 (9) | 0.0269 (10) | −0.0107 (8) | 0.0016 (8) | −0.0093 (8) |
C27 | 0.0319 (10) | 0.0150 (8) | 0.0249 (9) | −0.0093 (7) | −0.0033 (7) | −0.0037 (7) |
C28 | 0.0415 (11) | 0.0254 (10) | 0.0246 (9) | −0.0142 (8) | −0.0125 (8) | −0.0015 (7) |
C29 | 0.0308 (10) | 0.0275 (10) | 0.0268 (9) | −0.0125 (8) | −0.0048 (8) | −0.0080 (8) |
C30 | 0.0461 (13) | 0.0391 (12) | 0.0344 (11) | −0.0170 (10) | −0.0156 (10) | −0.0072 (9) |
C31 | 0.0549 (15) | 0.0564 (15) | 0.0425 (13) | −0.0287 (12) | −0.0153 (11) | −0.0164 (11) |
C32 | 0.0615 (16) | 0.0519 (15) | 0.0437 (13) | −0.0398 (13) | 0.0016 (11) | −0.0201 (11) |
C33 | 0.094 (2) | 0.0456 (14) | 0.0383 (13) | −0.0476 (15) | −0.0124 (13) | −0.0008 (11) |
C34 | 0.0774 (18) | 0.0400 (13) | 0.0310 (11) | −0.0352 (13) | −0.0170 (11) | −0.0023 (9) |
N1 | 0.0217 (7) | 0.0267 (8) | 0.0225 (7) | −0.0105 (6) | −0.0014 (6) | −0.0094 (6) |
N2 | 0.0241 (8) | 0.0209 (7) | 0.0199 (7) | −0.0105 (6) | −0.0005 (6) | −0.0064 (6) |
N3 | 0.0273 (8) | 0.0198 (8) | 0.0264 (8) | −0.0089 (6) | 0.0030 (6) | −0.0050 (6) |
N4 | 0.0198 (7) | 0.0219 (8) | 0.0358 (9) | −0.0076 (6) | −0.0030 (6) | −0.0085 (7) |
N5 | 0.0223 (7) | 0.0189 (7) | 0.0233 (7) | −0.0089 (6) | −0.0036 (6) | −0.0042 (6) |
N6 | 0.0313 (8) | 0.0212 (7) | 0.0246 (8) | −0.0126 (6) | −0.0072 (6) | −0.0042 (6) |
S1 | 0.0308 (3) | 0.0532 (3) | 0.0371 (3) | −0.0197 (2) | −0.0136 (2) | −0.0056 (2) |
S2 | 0.0221 (3) | 0.0555 (4) | 0.0574 (4) | −0.0146 (2) | −0.0140 (2) | 0.0036 (3) |
Cl1 | 0.0315 (2) | 0.0200 (2) | 0.0489 (3) | −0.00923 (18) | −0.0090 (2) | −0.0089 (2) |
Cl2A | 0.0228 (4) | 0.0248 (8) | 0.0240 (7) | −0.0103 (4) | 0.0029 (3) | −0.0110 (4) |
Cl2B | 0.039 (4) | 0.108 (13) | 0.050 (8) | −0.038 (7) | 0.011 (5) | −0.041 (10) |
Co1 | 0.01664 (13) | 0.02009 (13) | 0.02660 (14) | −0.00703 (9) | −0.00087 (9) | −0.01077 (10) |
C1—N1 | 1.298 (2) | C19—S2 | 1.710 (2) |
C1—S1 | 1.701 (2) | C19—H19 | 0.9500 |
C1—H1 | 0.9500 | C20—N4 | 1.381 (3) |
C2—C3 | 1.354 (3) | C20—C21 | 1.456 (3) |
C2—S1 | 1.708 (2) | C21—N5 | 1.318 (2) |
C2—H2 | 0.9500 | C21—N6 | 1.356 (2) |
C3—N1 | 1.382 (2) | C22—N5 | 1.377 (2) |
C3—C4 | 1.456 (3) | C22—C23 | 1.392 (3) |
C4—N2 | 1.317 (2) | C22—C27 | 1.400 (3) |
C4—N3 | 1.359 (2) | C23—C24 | 1.378 (3) |
C5—N2 | 1.389 (2) | C23—H23 | 0.9500 |
C5—C6 | 1.392 (3) | C24—C25 | 1.402 (3) |
C5—C10 | 1.394 (3) | C24—H24 | 0.9500 |
C6—C7 | 1.385 (3) | C25—C26 | 1.376 (3) |
C6—H6 | 0.9500 | C25—H25 | 0.9500 |
C7—C8 | 1.397 (3) | C26—C27 | 1.388 (3) |
C7—H7 | 0.9500 | C26—H26 | 0.9500 |
C8—C9 | 1.369 (3) | C27—N6 | 1.379 (2) |
C8—H8 | 0.9500 | C28—N6 | 1.460 (2) |
C9—C10 | 1.392 (3) | C28—C29 | 1.508 (3) |
C9—H9 | 0.9500 | C28—H28A | 0.9900 |
C10—N3 | 1.383 (3) | C28—H28B | 0.9900 |
C11—N3 | 1.452 (2) | C29—C34 | 1.370 (3) |
C11—C12 | 1.502 (3) | C29—C30 | 1.386 (3) |
C11—H11A | 0.9900 | C30—C31 | 1.380 (3) |
C11—H11B | 0.9900 | C30—H30 | 0.9500 |
C12—C17 | 1.381 (3) | C31—C32 | 1.372 (4) |
C12—C13 | 1.388 (3) | C31—H31 | 0.9500 |
C13—C14 | 1.376 (3) | C32—C33 | 1.368 (3) |
C13—H13 | 0.9500 | C32—H32 | 0.9500 |
C14—C15 | 1.375 (3) | C33—C34 | 1.388 (3) |
C14—H14 | 0.9500 | C33—H33 | 0.9500 |
C15—C16 | 1.371 (3) | C34—H34 | 0.9500 |
C15—H15 | 0.9500 | N1—Co1 | 2.1297 (15) |
C16—C17 | 1.382 (3) | N2—Co1 | 2.1901 (15) |
C16—H16 | 0.9500 | N4—Co1 | 2.1429 (16) |
C17—H17 | 0.9500 | N5—Co1 | 2.1739 (15) |
C18—N4 | 1.300 (3) | Cl1—Co1 | 2.3855 (5) |
C18—S2 | 1.703 (2) | Cl2A—Cl2B | 0.57 (5) |
C18—H18 | 0.9500 | Cl2A—Co1 | 2.4181 (19) |
C19—C20 | 1.352 (3) | Cl2B—Co1 | 2.261 (9) |
N1—C1—S1 | 114.29 (16) | C26—C25—H25 | 119.0 |
N1—C1—H1 | 122.9 | C24—C25—H25 | 119.0 |
S1—C1—H1 | 122.9 | C25—C26—C27 | 116.32 (19) |
C3—C2—S1 | 110.12 (16) | C25—C26—H26 | 121.8 |
C3—C2—H2 | 124.9 | C27—C26—H26 | 121.8 |
S1—C2—H2 | 124.9 | N6—C27—C26 | 131.34 (18) |
C2—C3—N1 | 114.08 (17) | N6—C27—C22 | 106.17 (16) |
C2—C3—C4 | 132.60 (18) | C26—C27—C22 | 122.42 (18) |
N1—C3—C4 | 113.32 (16) | N6—C28—C29 | 114.23 (16) |
N2—C4—N3 | 113.06 (16) | N6—C28—H28A | 108.7 |
N2—C4—C3 | 119.16 (16) | C29—C28—H28A | 108.7 |
N3—C4—C3 | 127.76 (17) | N6—C28—H28B | 108.7 |
N2—C5—C6 | 130.57 (18) | C29—C28—H28B | 108.7 |
N2—C5—C10 | 109.28 (17) | H28A—C28—H28B | 107.6 |
C6—C5—C10 | 120.10 (17) | C34—C29—C30 | 119.26 (19) |
C7—C6—C5 | 117.1 (2) | C34—C29—C28 | 123.75 (18) |
C7—C6—H6 | 121.4 | C30—C29—C28 | 116.99 (18) |
C5—C6—H6 | 121.4 | C31—C30—C29 | 120.2 (2) |
C6—C7—C8 | 121.7 (2) | C31—C30—H30 | 119.9 |
C6—C7—H7 | 119.1 | C29—C30—H30 | 119.9 |
C8—C7—H7 | 119.1 | C32—C31—C30 | 120.3 (2) |
C9—C8—C7 | 121.93 (19) | C32—C31—H31 | 119.9 |
C9—C8—H8 | 119.0 | C30—C31—H31 | 119.9 |
C7—C8—H8 | 119.0 | C33—C32—C31 | 119.8 (2) |
C8—C9—C10 | 116.2 (2) | C33—C32—H32 | 120.1 |
C8—C9—H9 | 121.9 | C31—C32—H32 | 120.1 |
C10—C9—H9 | 121.9 | C32—C33—C34 | 120.2 (2) |
N3—C10—C9 | 131.1 (2) | C32—C33—H33 | 119.9 |
N3—C10—C5 | 105.95 (16) | C34—C33—H33 | 119.9 |
C9—C10—C5 | 122.9 (2) | C29—C34—C33 | 120.3 (2) |
N3—C11—C12 | 114.20 (15) | C29—C34—H34 | 119.9 |
N3—C11—H11A | 108.7 | C33—C34—H34 | 119.9 |
C12—C11—H11A | 108.7 | C1—N1—C3 | 111.49 (16) |
N3—C11—H11B | 108.7 | C1—N1—Co1 | 131.34 (14) |
C12—C11—H11B | 108.7 | C3—N1—Co1 | 116.57 (12) |
H11A—C11—H11B | 107.6 | C4—N2—C5 | 105.28 (15) |
C17—C12—C13 | 119.35 (18) | C4—N2—Co1 | 113.82 (12) |
C17—C12—C11 | 123.18 (17) | C5—N2—Co1 | 139.41 (13) |
C13—C12—C11 | 117.45 (17) | C4—N3—C10 | 106.42 (16) |
C14—C13—C12 | 120.21 (19) | C4—N3—C11 | 128.90 (17) |
C14—C13—H13 | 119.9 | C10—N3—C11 | 124.67 (16) |
C12—C13—H13 | 119.9 | C18—N4—C20 | 111.57 (17) |
C15—C14—C13 | 119.97 (19) | C18—N4—Co1 | 131.45 (15) |
C15—C14—H14 | 120.0 | C20—N4—Co1 | 116.63 (12) |
C13—C14—H14 | 120.0 | C21—N5—C22 | 105.84 (15) |
C16—C15—C14 | 120.30 (19) | C21—N5—Co1 | 115.38 (12) |
C16—C15—H15 | 119.9 | C22—N5—Co1 | 138.75 (12) |
C14—C15—H15 | 119.9 | C21—N6—C27 | 106.33 (15) |
C15—C16—C17 | 120.08 (19) | C21—N6—C28 | 128.80 (17) |
C15—C16—H16 | 120.0 | C27—N6—C28 | 124.88 (16) |
C17—C16—H16 | 120.0 | C1—S1—C2 | 89.98 (10) |
C12—C17—C16 | 120.09 (18) | C18—S2—C19 | 90.14 (10) |
C12—C17—H17 | 120.0 | Cl2B—Cl2A—Co1 | 67.3 (11) |
C16—C17—H17 | 120.0 | Cl2A—Cl2B—Co1 | 99 (2) |
N4—C18—S2 | 114.02 (17) | N1—Co1—N4 | 169.37 (6) |
N4—C18—H18 | 123.0 | N1—Co1—N5 | 98.02 (6) |
S2—C18—H18 | 123.0 | N4—Co1—N5 | 75.45 (6) |
C20—C19—S2 | 109.95 (17) | N1—Co1—N2 | 75.58 (6) |
C20—C19—H19 | 125.0 | N4—Co1—N2 | 94.82 (6) |
S2—C19—H19 | 125.0 | N5—Co1—N2 | 79.86 (5) |
C19—C20—N4 | 114.31 (18) | N1—Co1—Cl2B | 104.7 (9) |
C19—C20—C21 | 132.2 (2) | N4—Co1—Cl2B | 81.7 (8) |
N4—C20—C21 | 113.53 (16) | N5—Co1—Cl2B | 157.1 (8) |
N5—C21—N6 | 112.85 (16) | N2—Co1—Cl2B | 102.9 (11) |
N5—C21—C20 | 118.58 (17) | N1—Co1—Cl1 | 91.26 (4) |
N6—C21—C20 | 128.53 (17) | N4—Co1—Cl1 | 96.61 (4) |
N5—C22—C23 | 130.57 (17) | N5—Co1—Cl1 | 86.27 (4) |
N5—C22—C27 | 108.81 (16) | N2—Co1—Cl1 | 159.21 (4) |
C23—C22—C27 | 120.57 (17) | Cl2B—Co1—Cl1 | 95.9 (9) |
C24—C23—C22 | 117.13 (18) | N1—Co1—Cl2A | 93.31 (8) |
C24—C23—H23 | 121.4 | N4—Co1—Cl2A | 91.82 (8) |
C22—C23—H23 | 121.4 | N5—Co1—Cl2A | 164.99 (7) |
C23—C24—C25 | 121.7 (2) | N2—Co1—Cl2A | 93.56 (5) |
C23—C24—H24 | 119.2 | Cl2B—Co1—Cl2A | 13.4 (12) |
C25—C24—H24 | 119.2 | Cl1—Co1—Cl2A | 103.35 (3) |
C26—C25—C24 | 121.90 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11A···Cl2Ai | 0.99 | 2.77 | 3.693 (2) | 155 |
C14—H14···Cl1ii | 0.95 | 2.69 | 3.584 (2) | 157 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x+1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | [CoCl2(C17H13N3S)2] |
Mr | 712.56 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 193 |
a, b, c (Å) | 10.1311 (3), 11.9582 (4), 14.2633 (5) |
α, β, γ (°) | 76.033 (3), 75.536 (3), 69.707 (3) |
V (Å3) | 1546.43 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.90 |
Crystal size (mm) | 0.40 × 0.40 × 0.20 |
Data collection | |
Diffractometer | Bruker Kappa APEXII Quazar area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.682, 0.840 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11578, 6284, 5601 |
Rint | 0.011 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.080, 1.05 |
No. of reflections | 6284 |
No. of parameters | 417 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.95, −0.68 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), PLATON (Spek, 2009) and publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11A···Cl2Ai | 0.99 | 2.77 | 3.693 (2) | 155.3 |
C14—H14···Cl1ii | 0.95 | 2.69 | 3.584 (2) | 156.5 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) x+1, y−1, z. |
References
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Devereux, M. O., Shea, D., Kellett, A., McCann, M., Walsh, M., Egan, D., Deegan, C., Kędziora, K., Rosair, G. & Müller-Bunz, H. (2007). J. Inorg. Biochem. 101, 881–892. Web of Science CSD CrossRef PubMed CAS Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Kowala, C., Murray, K. S., Swan, J. M. & West, B. O. (1971). Aust. J. Chem. 24, 1369–1375. CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yan-Jua, C. U. & Guang-Ganga, L. I. (2009). Chin. J. Struct. Chem. 28, 434–438. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The thiabendazole or (2-(4'-thiazolyl)benzimidazole), is an antimicrobial drug belonging to the benzimidazole derivatives which are ubiquitous in biology and biomedicine (Devereux et al. 2007), Beside its biological properties, thiabendazole is an effective ligand to coordinate transition metal ions (Kowala et al., 1971; Yan-Jua and Guang-Ganga, 2009).
The crystal structure of the title compound, show that the CoII ion adopts a distorted octahedral coordination arising from two bidentate ligands and a two Cl- anion of which one (Cl2) is splited over two positions (Cl2a and Cl2b) and four nitrogen donors from the ligands. Indeed, the refined occupancy rate of Cl2a and Cl2b sites shows that the first is occupied at 95 (2) % and the remainder in the second site respectively (Fig.1). The two heterocyclic ligands (S1N1C1C2C3) and (N2N3C4 to C10); (S2N4C18C1920) and (N5N6C21 TO C27) are nearly coplanar with dihedral angles between them of 1.16 (8) ° and 6.26 (9)° respectively. The dihedral angle between the both thiabendazole molecules surrounding the cobalt atom is of 74.1 (1)°. Each benzene ring (C12 to C17 and C29 to C34) is virtually perpendicular to the benzimidazole molecule (N2N3C5 to C10 and N5N6C21 to C27) to which it is fixed and the dihedral angle between them is 75.94 (9) for the first system and 75.55 (10) for the second.
The crystal strucrure is further stabilized by an intermolecular C—H···Cl no classic hydrogen bonds (Table 2).