organic compounds
(Z)-1-Chloro-1-[2-(2-nitrophenyl)hydrazinylidene]propan-2-one
aChemistry Department, Faculty of Science, Islamic University of Gaza, PO Box 108, Gaza, Palestine, bDepartment of Organic Chemistry, Johannes Gutenberg-University Mainz, Duesbergweg 10-14, D-55099 Mainz, Germany, and cManchester Institute of Biotechnology, School of Chemistry and EPS, The University of Manchester, Manchester M1 7DN, England
*Correspondence e-mail: john.m.gardiner@manchester.ac.uk
The title molecule, C9H8ClN3O3, lies on a mirror plane. Intramolecular N—H⋯O and N—H⋯Cl hydrogen bonds occur. One of the nitro O atoms is disordered (site occupancy ratio = 0.40:0.10).
Related literature
For details of the synthesis and for the importance of hydrazonoyl halides in organic synthesis and their biological activity and metabolism, see: Awadallah et al. (2006, 2008); Budarina et al. (2007); Shawalia et al. (2009); Thaher et al. (2002).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536812049938/rn2108sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812049938/rn2108Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812049938/rn2108Isup3.cml
2-Nitroaniline (0.1 mol) was dissolved in cold aqueous hydrochloric acid (80 ml, 5 N). To this solution was added dropwise a solution of sodium nitrite (7.6 g, 0.1 mol) in water (25 ml) with efficient stirring at 273–278 K. Stirring was continued for 20–30 min. The resulting freshly prepared solution of 2-nitrobenzendiazonium chloride was poured into a vigorously stirred cold solution (268 K) of 3-chloroacetylacetone (13.5 g, 0.1 mol) in pyridine/ water (160 ml 1:1 v/v). Stirring was continued until a solid precipitate was formed (10–20 min.). The reaction mixture was then diluted with cold water (200 ml), the solid product formed was collected, washed several times with cold water, dried and washed with ethanol. A small amount of the product was dissolved in DMF and left at room temperature for 2 days. Yellow needle crystals were isolated, m.p. 393 K.
Hydrogen atoms attached to carbons were placed at calculated positions with C—H = 0.95 Å (aromatic) or 0.98–0.99 Å (sp3 C-atom). Hydrogen atoms attached to nitrogen were located in diff. Fourier maps. All H atoms were refined in the riding-model approximation with isotropic displacement parameters (set at 1.2–1.5 times of the Ueq of the parent atom). The NO2 group is disorderd where one oxygen atom just off the mirror plane has two positions with relative site occupancies set to 0.4, (O9) and 0.1 (O9B) which generate a further two positions (their mirror images) with the same occupancies.
Hydrozonyl halides are considered as an important precursor in organic synthesis. They have been used extensively as starting material for in situ generation of 1,3-dipoles which in turn can be reacted with a wide range of organic species to generate five and six membered heterocyclic ring compounds. The molecule has two intermolecular NH···O and NH···Cl hydrogen bonds (Table 1) and distance between the molecules is 3.2710 (1) Å. The ring centers are ~2.87 Å apart. The packing is characterized by parallel molecules (perpendicular distance between the centre of gravity of the aromatic rings 3.2710 (1) Å). The molecule is planar and in order to calculate the distance a plane is required to be defined through a set of atoms (phenyl rings) and the distance of any atom of the nearest symmetry related molecules to this plane is then calculated. The distance between the symmetrical related phenyl rings is 3.2710 (1) Å but due to the slippage of centres of gravity of the rings (2.866 Å) there is no π-π interaction between the two rings.
For details of the synthesis and for the importance of hydrazonoyl halides in organic synthesis and their biological activity and metabolism, see: Awadallah et al. (2006, 2008); Budarina et al. (2007); Shawalia et al. (2009); Thaher et al. (2002).
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).C9H8ClN3O3 | F(000) = 496 |
Mr = 241.63 | Dx = 1.526 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 1147 reflections |
a = 14.1344 (10) Å | θ = 2.3–25.8° |
b = 6.5420 (5) Å | µ = 0.36 mm−1 |
c = 11.3748 (8) Å | T = 173 K |
V = 1051.80 (13) Å3 | Needle, yellow |
Z = 4 | 0.25 × 0.13 × 0.05 mm |
Bruker APEXII diffractometer | 1003 reflections with I > 2σ(I) |
Radiation source: sealed Tube | Rint = 0.045 |
Graphite monochromator | θmax = 27.9°, θmin = 2.3° |
CCD scan | h = −18→18 |
6908 measured reflections | k = −8→8 |
1365 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0651P)2 + 0.198P] where P = (Fo2 + 2Fc2)/3 |
1365 reflections | (Δ/σ)max = 0.001 |
109 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C9H8ClN3O3 | V = 1051.80 (13) Å3 |
Mr = 241.63 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 14.1344 (10) Å | µ = 0.36 mm−1 |
b = 6.5420 (5) Å | T = 173 K |
c = 11.3748 (8) Å | 0.25 × 0.13 × 0.05 mm |
Bruker APEXII diffractometer | 1003 reflections with I > 2σ(I) |
6908 measured reflections | Rint = 0.045 |
1365 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.121 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.58 e Å−3 |
1365 reflections | Δρmin = −0.28 e Å−3 |
109 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.17306 (5) | 0.2500 | 0.30944 (6) | 0.0416 (3) | |
C1 | −0.00994 (17) | 0.2500 | 0.0079 (2) | 0.0227 (5) | |
C2 | 0.02943 (17) | 0.2500 | −0.1054 (2) | 0.0240 (5) | |
C3 | −0.02668 (19) | 0.2500 | −0.2057 (2) | 0.0276 (6) | |
H3 | 0.0012 | 0.2500 | −0.2798 | 0.033* | |
C4 | −0.12361 (18) | 0.2500 | −0.1949 (2) | 0.0294 (6) | |
H4 | −0.1617 | 0.2500 | −0.2616 | 0.035* | |
C5 | −0.16419 (17) | 0.2500 | −0.0832 (2) | 0.0302 (6) | |
H5 | −0.2297 | 0.2500 | −0.0759 | 0.036* | |
C6 | −0.10892 (18) | 0.2500 | 0.0161 (2) | 0.0268 (6) | |
H6 | −0.1375 | 0.2500 | 0.0898 | 0.032* | |
N7 | 0.13162 (16) | 0.2500 | −0.1243 (2) | 0.0357 (6) | |
O8 | 0.18551 (13) | 0.2500 | −0.04010 (17) | 0.0413 (5) | |
O9 | 0.1605 (11) | 0.2922 (10) | −0.2234 (15) | 0.031 (9) | 0.40 |
O9B | 0.156 (5) | 0.135 (13) | −0.225 (6) | 0.033 (15) | 0.10 |
N10 | 0.04475 (14) | 0.2500 | 0.10920 (17) | 0.0270 (5) | |
H10 | 0.1106 | 0.2500 | 0.1091 | 0.040* | |
N11 | 0.00142 (15) | 0.2500 | 0.21389 (18) | 0.0259 (5) | |
C12 | 0.05021 (18) | 0.2500 | 0.3081 (2) | 0.0277 (6) | |
C13 | 0.0018 (2) | 0.2500 | 0.4244 (2) | 0.0362 (7) | |
O14 | 0.04865 (17) | 0.2500 | 0.51438 (17) | 0.0502 (6) | |
C15 | −0.1042 (2) | 0.2500 | 0.4226 (3) | 0.0517 (9) | |
H15A | −0.1274 | 0.2500 | 0.5019 | 0.078* | |
H15B | −0.1265 | 0.1302 | 0.3826 | 0.078* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0303 (4) | 0.0640 (5) | 0.0305 (4) | 0.000 | −0.0087 (3) | 0.000 |
C1 | 0.0224 (12) | 0.0260 (13) | 0.0198 (11) | 0.000 | −0.0032 (9) | 0.000 |
C2 | 0.0186 (11) | 0.0320 (14) | 0.0215 (12) | 0.000 | 0.0008 (9) | 0.000 |
C3 | 0.0321 (13) | 0.0315 (14) | 0.0192 (12) | 0.000 | 0.0016 (10) | 0.000 |
C4 | 0.0270 (13) | 0.0376 (15) | 0.0236 (13) | 0.000 | −0.0081 (11) | 0.000 |
C5 | 0.0196 (11) | 0.0413 (16) | 0.0297 (14) | 0.000 | −0.0047 (10) | 0.000 |
C6 | 0.0234 (12) | 0.0373 (15) | 0.0197 (12) | 0.000 | 0.0029 (10) | 0.000 |
N7 | 0.0293 (12) | 0.0544 (16) | 0.0235 (12) | 0.000 | 0.0018 (10) | 0.000 |
O8 | 0.0236 (10) | 0.0659 (15) | 0.0344 (11) | 0.000 | −0.0027 (9) | 0.000 |
O9 | 0.031 (2) | 0.03 (3) | 0.028 (2) | 0.002 (5) | 0.0129 (16) | 0.006 (6) |
O9B | 0.040 (10) | 0.03 (4) | 0.027 (8) | −0.010 (18) | 0.001 (7) | −0.016 (19) |
N10 | 0.0214 (10) | 0.0401 (13) | 0.0194 (10) | 0.000 | −0.0004 (8) | 0.000 |
N11 | 0.0265 (11) | 0.0307 (12) | 0.0206 (10) | 0.000 | 0.0007 (9) | 0.000 |
C12 | 0.0277 (13) | 0.0352 (15) | 0.0203 (13) | 0.000 | −0.0011 (10) | 0.000 |
C13 | 0.0430 (16) | 0.0457 (18) | 0.0199 (12) | 0.000 | 0.0012 (12) | 0.000 |
O14 | 0.0572 (14) | 0.0749 (17) | 0.0186 (10) | 0.000 | −0.0033 (10) | 0.000 |
C15 | 0.0446 (18) | 0.079 (3) | 0.0315 (17) | 0.000 | 0.0111 (15) | 0.000 |
Cl1—C12 | 1.736 (3) | N7—O9 | 1.230 (16) |
C1—N10 | 1.388 (3) | N7—O9i | 1.230 (16) |
C1—C6 | 1.402 (3) | N7—O9B | 1.42 (6) |
C1—C2 | 1.403 (3) | N7—O9Bi | 1.42 (6) |
C2—C3 | 1.390 (3) | O9—O9i | 0.553 (13) |
C2—N7 | 1.460 (3) | O9B—O9Bi | 1.50 (17) |
C3—C4 | 1.376 (4) | N10—N11 | 1.339 (3) |
C3—H3 | 0.9300 | N10—H10 | 0.9315 |
C4—C5 | 1.394 (4) | N11—C12 | 1.275 (3) |
C4—H4 | 0.9300 | C12—C13 | 1.489 (4) |
C5—C6 | 1.374 (3) | C13—O14 | 1.220 (3) |
C5—H5 | 0.9300 | C13—C15 | 1.497 (4) |
C6—H6 | 0.9300 | C15—H15A | 0.9600 |
N7—O8 | 1.224 (3) | C15—H15B | 0.9600 |
N10—C1—C6 | 120.0 (2) | O8—N7—O9Bi | 119 (3) |
N10—C1—C2 | 122.8 (2) | O9—N7—O9Bi | 19 (3) |
C6—C1—C2 | 117.2 (2) | O9i—N7—O9Bi | 45 (4) |
C3—C2—C1 | 121.8 (2) | O9B—N7—O9Bi | 64 (7) |
C3—C2—N7 | 116.3 (2) | O8—N7—C2 | 120.0 (2) |
C1—C2—N7 | 121.8 (2) | O9—N7—C2 | 117.6 (8) |
C4—C3—C2 | 119.7 (2) | O9i—N7—C2 | 117.6 (8) |
C4—C3—H3 | 120.2 | O9B—N7—C2 | 111 (2) |
C2—C3—H3 | 120.2 | O9Bi—N7—C2 | 111 (2) |
C3—C4—C5 | 119.4 (2) | O9i—O9—N7 | 77.0 (3) |
C3—C4—H4 | 120.3 | N7—O9B—O9Bi | 58 (4) |
C5—C4—H4 | 120.3 | N11—N10—C1 | 118.9 (2) |
C6—C5—C4 | 121.1 (2) | N11—N10—H10 | 117.3 |
C6—C5—H5 | 119.5 | C1—N10—H10 | 123.8 |
C4—C5—H5 | 119.5 | C12—N11—N10 | 120.0 (2) |
C5—C6—C1 | 120.8 (2) | N11—C12—C13 | 119.9 (2) |
C5—C6—H6 | 119.6 | N11—C12—Cl1 | 123.26 (19) |
C1—C6—H6 | 119.6 | C13—C12—Cl1 | 116.89 (18) |
O8—N7—O9 | 120.7 (8) | O14—C13—C12 | 119.7 (3) |
O8—N7—O9i | 120.7 (8) | O14—C13—C15 | 123.7 (3) |
O9—N7—O9i | 26.0 (6) | C12—C13—C15 | 116.6 (2) |
O8—N7—O9B | 119 (3) | C13—C15—H15A | 109.2 |
O9—N7—O9B | 45 (4) | C13—C15—H15B | 109.6 |
O9i—N7—O9B | 19 (3) | H15A—C15—H15B | 109.5 |
N10—C1—C2—C3 | 180.0 | C3—C2—N7—O9Bi | 35 (4) |
C6—C1—C2—C3 | −0.0 | C1—C2—N7—O9Bi | −145 (4) |
N10—C1—C2—N7 | −0.0 | O8—N7—O9—O9i | 97.9 (3) |
C6—C1—C2—N7 | 180.0 | O9B—N7—O9—O9i | −4 (5) |
C1—C2—C3—C4 | 0.0 | O9Bi—N7—O9—O9i | −172 (11) |
N7—C2—C3—C4 | 180.0 | C2—N7—O9—O9i | −96.9 (3) |
C2—C3—C4—C5 | −0.0 | O8—N7—O9B—O9Bi | −110 (2) |
C3—C4—C5—C6 | 0.0 | O9—N7—O9B—O9Bi | −4 (6) |
C4—C5—C6—C1 | −0.0 | O9i—N7—O9B—O9Bi | −9 (13) |
N10—C1—C6—C5 | 180.0 | C2—N7—O9B—O9Bi | 104 (3) |
C2—C1—C6—C5 | 0.0 | C6—C1—N10—N11 | −0.0 |
C3—C2—N7—O8 | 180.0 | C2—C1—N10—N11 | 180.0 |
C1—C2—N7—O8 | 0.0 | C1—N10—N11—C12 | 180.0 |
C3—C2—N7—O9 | 14.7 (4) | N10—N11—C12—C13 | 180.0 |
C1—C2—N7—O9 | −165.3 (4) | N10—N11—C12—Cl1 | −0.0 |
C3—C2—N7—O9i | −14.7 (4) | N11—C12—C13—O14 | 180.0 |
C1—C2—N7—O9i | 165.3 (4) | Cl1—C12—C13—O14 | 0.0 |
C3—C2—N7—O9B | −35 (4) | N11—C12—C13—C15 | −0.0 |
C1—C2—N7—O9B | 145 (4) | Cl1—C12—C13—C15 | 180.0 |
Symmetry code: (i) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···Cl1 | 0.93 | 2.44 | 2.912 (2) | 111 |
N10—H10···O8 | 0.93 | 2.00 | 2.616 (3) | 122 |
Experimental details
Crystal data | |
Chemical formula | C9H8ClN3O3 |
Mr | 241.63 |
Crystal system, space group | Orthorhombic, Pnma |
Temperature (K) | 173 |
a, b, c (Å) | 14.1344 (10), 6.5420 (5), 11.3748 (8) |
V (Å3) | 1051.80 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.36 |
Crystal size (mm) | 0.25 × 0.13 × 0.05 |
Data collection | |
Diffractometer | Bruker APEXII |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6908, 1365, 1003 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.121, 1.05 |
No. of reflections | 1365 |
No. of parameters | 109 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.28 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N10—H10···Cl1 | 0.93 | 2.44 | 2.912 (2) | 111 |
N10—H10···O8 | 0.93 | 2.00 | 2.616 (3) | 122 |
Acknowledgements
The authors would like to thank the Deanship of Scientific Research at the Islamic University of Gaza for their financial support to RYM, BAAT and AMA. Thanks are due to the graduate students Rasha Alsalahat and Huda Hammouda for their practical scientific contribution.
References
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Hydrozonyl halides are considered as an important precursor in organic synthesis. They have been used extensively as starting material for in situ generation of 1,3-dipoles which in turn can be reacted with a wide range of organic species to generate five and six membered heterocyclic ring compounds. The molecule has two intermolecular NH···O and NH···Cl hydrogen bonds (Table 1) and distance between the molecules is 3.2710 (1) Å. The ring centers are ~2.87 Å apart. The packing is characterized by parallel molecules (perpendicular distance between the centre of gravity of the aromatic rings 3.2710 (1) Å). The molecule is planar and in order to calculate the distance a plane is required to be defined through a set of atoms (phenyl rings) and the distance of any atom of the nearest symmetry related molecules to this plane is then calculated. The distance between the symmetrical related phenyl rings is 3.2710 (1) Å but due to the slippage of centres of gravity of the rings (2.866 Å) there is no π-π interaction between the two rings.