organic compounds
Bosentan monohydrate
aDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, bDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA, cNelson Mandela Metropolitan University, Summerstrand Campus, Department of Chemistry, University Way, Summerstrand, PP Box 77000, Port Elizabeth 6031, South Africa, and dDepartment of Chemistry, Howard University, 525 College Street NW, Washington, DC 20059, USA
*Correspondence e-mail: jjasinski@keene.edu
In the title compound, C27H29N5O6S·H2O {systematic name: 4-tert-butyl-N-[6-(2-hydroxyethoxy)-5-(2-methoxyphenoxy)-2-(pyrimidin-2-yl)pyrimidin-4-yl]benzene-1-sulfonamide monohydrate], the dihedral angle between the mean planes of the pyrimidine rings is 27.0 (1)°. The dihedral angle between the mean planes of the benzene rings is 47.7 (8)°, forming a U-shaped channel around the chain of twisted pyrimidine rings. The crystal packing is stabilized by O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds with a single water molecule, and weak O—H⋯N intermolecular interactions between the hydroxy group and one of the pyrimidine rings producing an two-dimensional supramolecular array in the bc plane. The title compound studied was a twin with the major component being approximately 57%.
Related literature
For reviews of bosentan in the management of pulmonary arterial hypertension and systemic sclerosis, see: Gabbay et al. (2007); Kumar et al. (2011); Oldfield & Lyseng-Williamson (2006). For related structures, see: Singh et al. (1985); El-Ghamry et al. (2008); Kant et al. (2012).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Agilent, 2012); cell CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536812048969/tk5176sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536812048969/tk5176Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536812048969/tk5176Isup3.cml
The title compound was obtained as a gift sample from R. L. Fine Chem, Bengaluru, India. X-ray quality crystals were obtained by slow evaporation of ethanol solution (m.p.: 383–385 K).
Water-bound H1W and H2W were located in a Fourier map and restrained (O—H = 0.82 and H1w···H2w = 1.30). All remaining H atoms were placed in their calculated positions and then refined using the riding model with atom—H lengths of 0.93 Å (CH), 0.97 Å (CH2), 0.96 Å (CH3) and 0.86 Å (NH). Uiso were set to 1.19-1.21 (CH, CH2), 1.49 (CH3) or 1.20 (NH) times Ueq of the parent atom. The title compound refines as a
twin with BASF = 0.431.Bosentan (chemically, 4-tert-butyl-N-[6-(2-hydroxyethoxy)-5-(2-methoxyphenoxy) -2-(pyrimidin-2-yl)pyrimidin-4-yl]benzene-1-sulfonamide) is a dual endothelin receptor antagonist used in the treatment of pulmonary artery hypertension (PAH). Bosentan is used to treat pulmonary hypertension by blocking the action of endothelin molecules that would otherwise promote narrowing of the blood vessels and lead to high blood pressure. A review of bosentan in the management of pulmonary arterial hypertension is published (Gabbay et al., 2007). Another review on the use of bosentan in pulmonary arterial hypertension and systemic sclerosis is also published (Oldfield & Lyseng-Williamson, 2006). A spectrophotometric method for the determination of bosentan monohydrate in bulk and pharmaceutical dosage forms is reported (Kumar et al., 2011). The crystal structures of some related compounds, viz., N1-(2,6-dimethyl-4-pyrimidinyl)sulphanilamide (Singh et al., 1985), 4-[(3-formyl-4-hydroxyphenyl)diazenyl]-N-(pyrimidin-2-yl)benzenesulfonamide (El-Ghamry et al., 2008) and N-(2-{[5-bromo-2-(morpholin-4-yl)pyrimidin-4-yl]sulfanyl}-4-methoxyphenyl)- 4-methyl benzenesulfonamide (Kant et al., 2012), have been reported. In view of the importance of the title compound, (I), the paper reports its crystal structure.
In (I), the dihedral angle between the mean planes of the two pyrimidine rings is 27.0 (1)° (Fig. 1). The dihedral angle between the mean planes of the two benzene rings is 47.7 (8)° forming a U-shaped channel around the chain of twisted pyrimidine rings. Crystal packing is stabilized by O—H···O, O—H···N and N—H···O hydrogen bonds with a single water molecule and weak O—H···N intermolecular interactions between the hydroxy group and one of the nearby pyrimidine rings (Fig. 2).
For reviews of bosentan in the management of pulmonary arterial hypertension and systemic sclerosis, see: Gabbay et al. (2007); Kumar et al. (2011); Oldfield & Lyseng-Williamson (2006). For related structures, see: Singh et al. (1985); El-Ghamry et al. (2008); Kant et al. (2012).
Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C27H29N5O6S·H2O | F(000) = 1200 |
Mr = 569.63 | Dx = 1.385 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
Hall symbol: -P 2ybc | Cell parameters from 3219 reflections |
a = 12.3393 (4) Å | θ = 2.9–75.5° |
b = 15.1238 (6) Å | µ = 1.52 mm−1 |
c = 14.6988 (4) Å | T = 123 K |
β = 95.037 (3)° | Prism, colourless |
V = 2732.46 (16) Å3 | 0.79 × 0.43 × 0.22 mm |
Z = 4 |
Agilent Xcalibur (Ruby, Gemini) diffractometer | 9563 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 7477 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.000 |
Detector resolution: 10.5081 pixels mm-1 | θmax = 76.1°, θmin = 3.6° |
ω scans | h = −15→14 |
Absorption correction: analytical (CrysAlis PRO; Agilent, 2012) | k = −18→18 |
Tmin = 0.535, Tmax = 0.766 | l = −18→18 |
9563 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.1185P)2] where P = (Fo2 + 2Fc2)/3 |
9563 reflections | (Δ/σ)max < 0.001 |
373 parameters | Δρmax = 0.44 e Å−3 |
3 restraints | Δρmin = −0.77 e Å−3 |
C27H29N5O6S·H2O | V = 2732.46 (16) Å3 |
Mr = 569.63 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 12.3393 (4) Å | µ = 1.52 mm−1 |
b = 15.1238 (6) Å | T = 123 K |
c = 14.6988 (4) Å | 0.79 × 0.43 × 0.22 mm |
β = 95.037 (3)° |
Agilent Xcalibur (Ruby, Gemini) diffractometer | 9563 independent reflections |
Absorption correction: analytical (CrysAlis PRO; Agilent, 2012) | 7477 reflections with I > 2σ(I) |
Tmin = 0.535, Tmax = 0.766 | Rint = 0.000 |
9563 measured reflections |
R[F2 > 2σ(F2)] = 0.055 | 3 restraints |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.44 e Å−3 |
9563 reflections | Δρmin = −0.77 e Å−3 |
373 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.61088 (3) | 0.25246 (3) | 0.77145 (3) | 0.02158 (12) | |
O1 | 0.52137 (11) | 0.26956 (9) | 0.70499 (10) | 0.0278 (3) | |
O2 | 0.60422 (11) | 0.17933 (9) | 0.83307 (9) | 0.0286 (3) | |
O3 | 0.90811 (10) | 0.17574 (9) | 0.64520 (9) | 0.0223 (3) | |
O4 | 1.00833 (11) | 0.03046 (9) | 0.69883 (10) | 0.0319 (3) | |
O5 | 0.96944 (10) | 0.26749 (8) | 0.49814 (9) | 0.0211 (3) | |
O6 | 1.06737 (13) | 0.43628 (11) | 0.54935 (14) | 0.0466 (5) | |
H6 | 1.0995 | 0.4851 | 0.5474 | 0.056* | |
O1W | 0.80006 (14) | 0.07096 (12) | 0.78315 (12) | 0.0431 (4) | |
H1W | 0.8518 (18) | 0.0432 (19) | 0.772 (2) | 0.065* | |
H2W | 0.774 (2) | 0.050 (2) | 0.8265 (16) | 0.065* | |
N1 | 0.72198 (13) | 0.23031 (11) | 0.72150 (11) | 0.0240 (3) | |
H1A | 0.7601 | 0.1839 | 0.7413 | 0.029* | |
N2 | 0.70609 (12) | 0.35062 (10) | 0.62171 (10) | 0.0201 (3) | |
N3 | 0.83084 (11) | 0.37054 (10) | 0.50764 (10) | 0.0193 (3) | |
N4 | 0.69029 (12) | 0.49778 (11) | 0.43244 (10) | 0.0228 (3) | |
N5 | 0.63133 (12) | 0.51751 (10) | 0.58109 (11) | 0.0216 (3) | |
C1 | 0.63930 (15) | 0.34843 (13) | 0.83661 (13) | 0.0234 (4) | |
C2 | 0.61384 (14) | 0.43168 (13) | 0.80149 (12) | 0.0229 (4) | |
H2A | 0.5839 | 0.4383 | 0.7401 | 0.027* | |
C3 | 0.63269 (15) | 0.50540 (13) | 0.85735 (13) | 0.0254 (4) | |
H3A | 0.6144 | 0.5624 | 0.8337 | 0.031* | |
C4 | 0.67792 (16) | 0.49731 (14) | 0.94734 (13) | 0.0274 (4) | |
C5 | 0.7032 (2) | 0.41272 (16) | 0.97988 (15) | 0.0376 (5) | |
H5A | 0.7348 | 0.4058 | 1.0407 | 0.045* | |
C6 | 0.68348 (19) | 0.33858 (15) | 0.92605 (15) | 0.0354 (5) | |
H6A | 0.7001 | 0.2814 | 0.9501 | 0.042* | |
C7 | 0.70065 (18) | 0.57723 (14) | 1.01064 (14) | 0.0315 (4) | |
C8 | 0.6619 (3) | 0.66378 (17) | 0.96631 (19) | 0.0588 (8) | |
H8A | 0.5833 | 0.6609 | 0.9501 | 0.088* | |
H8B | 0.6993 | 0.6736 | 0.9110 | 0.088* | |
H8C | 0.6783 | 0.7126 | 1.0092 | 0.088* | |
C9 | 0.8239 (2) | 0.5843 (2) | 1.03558 (19) | 0.0508 (7) | |
H9A | 0.8390 | 0.6337 | 1.0779 | 0.076* | |
H9B | 0.8607 | 0.5944 | 0.9801 | 0.076* | |
H9C | 0.8507 | 0.5292 | 1.0647 | 0.076* | |
C10 | 0.6441 (2) | 0.56343 (18) | 1.09732 (16) | 0.0451 (6) | |
H10A | 0.5657 | 0.5565 | 1.0816 | 0.068* | |
H10B | 0.6571 | 0.6148 | 1.1375 | 0.068* | |
H10C | 0.6729 | 0.5102 | 1.1288 | 0.068* | |
C11 | 0.76040 (14) | 0.27812 (12) | 0.65145 (12) | 0.0193 (4) | |
C12 | 0.85494 (14) | 0.25075 (12) | 0.61345 (12) | 0.0194 (3) | |
C13 | 0.88431 (14) | 0.29866 (12) | 0.53861 (12) | 0.0193 (3) | |
C14 | 0.74497 (13) | 0.39270 (12) | 0.55183 (12) | 0.0189 (4) | |
C15 | 0.68504 (13) | 0.47494 (12) | 0.51997 (12) | 0.0192 (3) | |
C16 | 0.63172 (15) | 0.56851 (13) | 0.40389 (13) | 0.0251 (4) | |
H16A | 0.6321 | 0.5865 | 0.3420 | 0.030* | |
C17 | 0.57088 (15) | 0.61632 (12) | 0.46094 (14) | 0.0249 (4) | |
H17A | 0.5281 | 0.6655 | 0.4395 | 0.030* | |
C18 | 0.57539 (14) | 0.58898 (12) | 0.55099 (14) | 0.0244 (4) | |
H18A | 0.5374 | 0.6222 | 0.5929 | 0.029* | |
C19 | 1.01482 (14) | 0.18540 (13) | 0.68486 (12) | 0.0221 (4) | |
C20 | 1.06708 (15) | 0.10674 (13) | 0.71295 (13) | 0.0252 (4) | |
C21 | 1.17366 (16) | 0.11063 (15) | 0.75333 (13) | 0.0301 (4) | |
H21A | 1.2102 | 0.0578 | 0.7729 | 0.036* | |
C22 | 1.22647 (16) | 0.19136 (16) | 0.76497 (13) | 0.0328 (5) | |
H22A | 1.2990 | 0.1936 | 0.7925 | 0.039* | |
C23 | 1.17412 (16) | 0.26824 (15) | 0.73685 (14) | 0.0300 (4) | |
H23A | 1.2105 | 0.3234 | 0.7451 | 0.036* | |
C24 | 1.06718 (15) | 0.26529 (13) | 0.69604 (12) | 0.0245 (4) | |
H24A | 1.0311 | 0.3183 | 0.6762 | 0.029* | |
C25 | 1.06856 (19) | −0.05017 (16) | 0.7061 (2) | 0.0476 (7) | |
H25A | 1.0213 | −0.0994 | 0.6847 | 0.071* | |
H25B | 1.0954 | −0.0601 | 0.7701 | 0.071* | |
H25C | 1.1303 | −0.0464 | 0.6687 | 0.071* | |
C26 | 1.02013 (15) | 0.32487 (12) | 0.43522 (12) | 0.0233 (4) | |
H26A | 0.9652 | 0.3658 | 0.4056 | 0.028* | |
H26B | 1.0502 | 0.2890 | 0.3870 | 0.028* | |
C27 | 1.10957 (16) | 0.37666 (15) | 0.48616 (15) | 0.0323 (5) | |
H27A | 1.1613 | 0.3355 | 0.5195 | 0.039* | |
H27B | 1.1498 | 0.4104 | 0.4422 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0224 (2) | 0.0212 (2) | 0.0225 (2) | −0.00108 (16) | 0.00979 (17) | 0.00304 (17) |
O1 | 0.0249 (6) | 0.0310 (7) | 0.0278 (7) | −0.0014 (6) | 0.0043 (5) | 0.0023 (6) |
O2 | 0.0328 (7) | 0.0243 (7) | 0.0309 (7) | −0.0008 (5) | 0.0143 (6) | 0.0062 (6) |
O3 | 0.0210 (6) | 0.0199 (6) | 0.0267 (6) | 0.0018 (5) | 0.0055 (5) | 0.0054 (5) |
O4 | 0.0299 (7) | 0.0247 (7) | 0.0424 (8) | 0.0056 (6) | 0.0109 (6) | 0.0106 (6) |
O5 | 0.0216 (6) | 0.0202 (6) | 0.0228 (6) | 0.0026 (5) | 0.0095 (5) | 0.0023 (5) |
O6 | 0.0369 (8) | 0.0366 (9) | 0.0694 (12) | −0.0127 (7) | 0.0228 (8) | −0.0265 (9) |
O1W | 0.0474 (9) | 0.0412 (10) | 0.0453 (10) | 0.0189 (7) | 0.0300 (8) | 0.0228 (8) |
N1 | 0.0266 (8) | 0.0201 (8) | 0.0271 (8) | 0.0047 (6) | 0.0125 (6) | 0.0057 (6) |
N2 | 0.0211 (7) | 0.0189 (7) | 0.0209 (7) | 0.0013 (6) | 0.0060 (6) | 0.0008 (6) |
N3 | 0.0213 (7) | 0.0196 (7) | 0.0174 (7) | 0.0011 (6) | 0.0050 (6) | 0.0005 (6) |
N4 | 0.0250 (7) | 0.0230 (8) | 0.0211 (7) | 0.0019 (6) | 0.0056 (6) | 0.0018 (6) |
N5 | 0.0216 (7) | 0.0201 (7) | 0.0238 (7) | 0.0004 (6) | 0.0055 (6) | −0.0004 (6) |
C1 | 0.0250 (8) | 0.0220 (9) | 0.0244 (9) | 0.0010 (7) | 0.0082 (7) | 0.0005 (7) |
C2 | 0.0248 (8) | 0.0247 (9) | 0.0200 (8) | 0.0008 (7) | 0.0070 (7) | 0.0040 (7) |
C3 | 0.0276 (9) | 0.0258 (9) | 0.0238 (9) | 0.0020 (7) | 0.0075 (7) | 0.0051 (8) |
C4 | 0.0318 (10) | 0.0272 (10) | 0.0238 (9) | 0.0008 (8) | 0.0053 (8) | −0.0014 (8) |
C5 | 0.0529 (13) | 0.0321 (11) | 0.0262 (10) | 0.0074 (10) | −0.0055 (9) | 0.0013 (9) |
C6 | 0.0473 (12) | 0.0284 (11) | 0.0295 (11) | 0.0073 (9) | −0.0014 (9) | 0.0056 (9) |
C7 | 0.0409 (11) | 0.0285 (11) | 0.0255 (10) | 0.0000 (9) | 0.0046 (8) | −0.0042 (9) |
C8 | 0.105 (2) | 0.0305 (13) | 0.0398 (14) | 0.0115 (14) | −0.0028 (15) | −0.0075 (11) |
C9 | 0.0438 (13) | 0.0553 (16) | 0.0545 (16) | −0.0129 (12) | 0.0121 (12) | −0.0205 (14) |
C10 | 0.0534 (14) | 0.0508 (15) | 0.0335 (12) | −0.0131 (12) | 0.0168 (11) | −0.0133 (11) |
C11 | 0.0226 (8) | 0.0179 (8) | 0.0183 (8) | −0.0028 (6) | 0.0061 (7) | −0.0018 (7) |
C12 | 0.0210 (8) | 0.0168 (8) | 0.0207 (9) | 0.0009 (6) | 0.0040 (7) | 0.0011 (7) |
C13 | 0.0208 (8) | 0.0193 (8) | 0.0184 (8) | −0.0015 (6) | 0.0053 (6) | −0.0020 (7) |
C14 | 0.0206 (8) | 0.0191 (9) | 0.0173 (8) | −0.0012 (6) | 0.0042 (6) | −0.0010 (7) |
C15 | 0.0184 (7) | 0.0183 (8) | 0.0213 (8) | −0.0014 (6) | 0.0045 (6) | −0.0004 (7) |
C16 | 0.0273 (9) | 0.0232 (9) | 0.0247 (9) | 0.0001 (7) | 0.0026 (7) | 0.0051 (8) |
C17 | 0.0222 (8) | 0.0183 (9) | 0.0342 (10) | 0.0006 (7) | 0.0017 (7) | 0.0025 (8) |
C18 | 0.0226 (8) | 0.0187 (8) | 0.0326 (10) | 0.0020 (7) | 0.0062 (7) | −0.0028 (8) |
C19 | 0.0212 (8) | 0.0287 (10) | 0.0175 (8) | 0.0046 (7) | 0.0071 (7) | 0.0034 (7) |
C20 | 0.0258 (9) | 0.0285 (10) | 0.0230 (9) | 0.0068 (7) | 0.0110 (7) | 0.0074 (8) |
C21 | 0.0293 (9) | 0.0401 (12) | 0.0220 (9) | 0.0123 (8) | 0.0078 (8) | 0.0075 (8) |
C22 | 0.0267 (10) | 0.0491 (13) | 0.0226 (9) | 0.0051 (9) | 0.0027 (8) | 0.0023 (9) |
C23 | 0.0277 (9) | 0.0385 (12) | 0.0239 (10) | −0.0031 (8) | 0.0033 (7) | −0.0014 (9) |
C24 | 0.0260 (9) | 0.0296 (10) | 0.0182 (9) | 0.0025 (7) | 0.0046 (7) | 0.0007 (7) |
C25 | 0.0388 (12) | 0.0261 (11) | 0.0796 (19) | 0.0088 (9) | 0.0140 (12) | 0.0183 (12) |
C26 | 0.0282 (9) | 0.0229 (9) | 0.0206 (9) | 0.0027 (7) | 0.0132 (7) | 0.0016 (7) |
C27 | 0.0274 (9) | 0.0297 (11) | 0.0422 (12) | −0.0023 (8) | 0.0163 (9) | −0.0050 (9) |
S1—O1 | 1.4324 (14) | C7—C9 | 1.537 (3) |
S1—O2 | 1.4365 (14) | C8—H8A | 0.9800 |
S1—N1 | 1.6455 (15) | C8—H8B | 0.9800 |
S1—C1 | 1.757 (2) | C8—H8C | 0.9800 |
O3—C12 | 1.372 (2) | C9—H9A | 0.9800 |
O3—C19 | 1.400 (2) | C9—H9B | 0.9800 |
O4—C20 | 1.369 (2) | C9—H9C | 0.9800 |
O4—C25 | 1.427 (2) | C10—H10A | 0.9800 |
O5—C13 | 1.338 (2) | C10—H10B | 0.9800 |
O5—C26 | 1.450 (2) | C10—H10C | 0.9800 |
O6—C27 | 1.425 (2) | C11—C12 | 1.400 (2) |
O6—H6 | 0.8400 | C12—C13 | 1.392 (2) |
O1W—H1W | 0.795 (16) | C14—C15 | 1.501 (2) |
O1W—H2W | 0.805 (16) | C16—C17 | 1.378 (3) |
N1—C11 | 1.376 (2) | C16—H16A | 0.9500 |
N1—H1A | 0.8800 | C17—C18 | 1.383 (3) |
N2—C14 | 1.333 (2) | C17—H17A | 0.9500 |
N2—C11 | 1.338 (2) | C18—H18A | 0.9500 |
N3—C13 | 1.331 (2) | C19—C24 | 1.373 (3) |
N3—C14 | 1.333 (2) | C19—C20 | 1.398 (3) |
N4—C16 | 1.338 (2) | C20—C21 | 1.396 (3) |
N4—C15 | 1.339 (2) | C21—C22 | 1.387 (3) |
N5—C15 | 1.329 (2) | C21—H21A | 0.9500 |
N5—C18 | 1.337 (2) | C22—C23 | 1.376 (3) |
C1—C6 | 1.386 (3) | C22—H22A | 0.9500 |
C1—C2 | 1.386 (3) | C23—C24 | 1.401 (3) |
C2—C3 | 1.392 (3) | C23—H23A | 0.9500 |
C2—H2A | 0.9500 | C24—H24A | 0.9500 |
C3—C4 | 1.395 (3) | C25—H25A | 0.9800 |
C3—H3A | 0.9500 | C25—H25B | 0.9800 |
C4—C5 | 1.391 (3) | C25—H25C | 0.9800 |
C4—C7 | 1.536 (3) | C26—C27 | 1.499 (3) |
C5—C6 | 1.381 (3) | C26—H26A | 0.9900 |
C5—H5A | 0.9500 | C26—H26B | 0.9900 |
C6—H6A | 0.9500 | C27—H27A | 0.9900 |
C7—C10 | 1.520 (3) | C27—H27B | 0.9900 |
C7—C8 | 1.520 (3) | ||
O1—S1—O2 | 119.06 (9) | N2—C11—N1 | 118.65 (15) |
O1—S1—N1 | 110.81 (8) | N2—C11—C12 | 121.54 (16) |
O2—S1—N1 | 102.75 (8) | N1—C11—C12 | 119.81 (17) |
O1—S1—C1 | 109.13 (9) | O3—C12—C13 | 123.34 (16) |
O2—S1—C1 | 108.18 (9) | O3—C12—C11 | 119.96 (16) |
N1—S1—C1 | 106.09 (9) | C13—C12—C11 | 116.46 (16) |
C12—O3—C19 | 117.36 (14) | N3—C13—O5 | 121.38 (15) |
C20—O4—C25 | 116.32 (16) | N3—C13—C12 | 122.68 (16) |
C13—O5—C26 | 118.20 (14) | O5—C13—C12 | 115.93 (16) |
C27—O6—H6 | 109.5 | N2—C14—N3 | 127.63 (17) |
H1W—O1W—H2W | 110 (2) | N2—C14—C15 | 115.81 (15) |
C11—N1—S1 | 125.60 (13) | N3—C14—C15 | 116.56 (15) |
C11—N1—H1A | 117.2 | N5—C15—N4 | 126.42 (17) |
S1—N1—H1A | 117.2 | N5—C15—C14 | 116.86 (16) |
C14—N2—C11 | 116.05 (15) | N4—C15—C14 | 116.71 (15) |
C13—N3—C14 | 115.46 (15) | N4—C16—C17 | 122.46 (18) |
C16—N4—C15 | 115.93 (16) | N4—C16—H16A | 118.8 |
C15—N5—C18 | 116.21 (16) | C17—C16—H16A | 118.8 |
C6—C1—C2 | 120.54 (18) | C16—C17—C18 | 116.55 (17) |
C6—C1—S1 | 118.11 (15) | C16—C17—H17A | 121.7 |
C2—C1—S1 | 121.29 (15) | C18—C17—H17A | 121.7 |
C1—C2—C3 | 119.15 (17) | N5—C18—C17 | 122.32 (17) |
C1—C2—H2A | 120.4 | N5—C18—H18A | 118.8 |
C3—C2—H2A | 120.4 | C17—C18—H18A | 118.8 |
C2—C3—C4 | 121.41 (18) | C24—C19—C20 | 120.89 (18) |
C2—C3—H3A | 119.3 | C24—C19—O3 | 123.86 (17) |
C4—C3—H3A | 119.3 | C20—C19—O3 | 115.26 (17) |
C5—C4—C3 | 117.74 (19) | O4—C20—C21 | 124.53 (18) |
C5—C4—C7 | 119.46 (18) | O4—C20—C19 | 116.62 (17) |
C3—C4—C7 | 122.81 (19) | C21—C20—C19 | 118.85 (19) |
C6—C5—C4 | 121.77 (19) | C22—C21—C20 | 120.29 (19) |
C6—C5—H5A | 119.1 | C22—C21—H21A | 119.9 |
C4—C5—H5A | 119.1 | C20—C21—H21A | 119.9 |
C5—C6—C1 | 119.39 (19) | C23—C22—C21 | 120.24 (19) |
C5—C6—H6A | 120.3 | C23—C22—H22A | 119.9 |
C1—C6—H6A | 120.3 | C21—C22—H22A | 119.9 |
C10—C7—C8 | 109.1 (2) | C22—C23—C24 | 120.1 (2) |
C10—C7—C4 | 109.08 (18) | C22—C23—H23A | 120.0 |
C8—C7—C4 | 112.58 (18) | C24—C23—H23A | 120.0 |
C10—C7—C9 | 109.1 (2) | C19—C24—C23 | 119.65 (19) |
C8—C7—C9 | 108.1 (2) | C19—C24—H24A | 120.2 |
C4—C7—C9 | 108.85 (18) | C23—C24—H24A | 120.2 |
C7—C8—H8A | 109.5 | O4—C25—H25A | 109.5 |
C7—C8—H8B | 109.5 | O4—C25—H25B | 109.5 |
H8A—C8—H8B | 109.5 | H25A—C25—H25B | 109.5 |
C7—C8—H8C | 109.5 | O4—C25—H25C | 109.5 |
H8A—C8—H8C | 109.5 | H25A—C25—H25C | 109.5 |
H8B—C8—H8C | 109.5 | H25B—C25—H25C | 109.5 |
C7—C9—H9A | 109.5 | O5—C26—C27 | 109.51 (15) |
C7—C9—H9B | 109.5 | O5—C26—H26A | 109.8 |
H9A—C9—H9B | 109.5 | C27—C26—H26A | 109.8 |
C7—C9—H9C | 109.5 | O5—C26—H26B | 109.8 |
H9A—C9—H9C | 109.5 | C27—C26—H26B | 109.8 |
H9B—C9—H9C | 109.5 | H26A—C26—H26B | 108.2 |
C7—C10—H10A | 109.5 | O6—C27—C26 | 111.16 (16) |
C7—C10—H10B | 109.5 | O6—C27—H27A | 109.4 |
H10A—C10—H10B | 109.5 | C26—C27—H27A | 109.4 |
C7—C10—H10C | 109.5 | O6—C27—H27B | 109.4 |
H10A—C10—H10C | 109.5 | C26—C27—H27B | 109.4 |
H10B—C10—H10C | 109.5 | H27A—C27—H27B | 108.0 |
O1—S1—N1—C11 | 47.22 (18) | C26—O5—C13—C12 | −165.22 (15) |
O2—S1—N1—C11 | 175.43 (16) | O3—C12—C13—N3 | 178.87 (16) |
C1—S1—N1—C11 | −71.10 (18) | C11—C12—C13—N3 | 4.5 (3) |
O1—S1—C1—C6 | 150.77 (16) | O3—C12—C13—O5 | −0.3 (3) |
O2—S1—C1—C6 | 19.86 (18) | C11—C12—C13—O5 | −174.61 (16) |
N1—S1—C1—C6 | −89.80 (17) | C11—N2—C14—N3 | 0.7 (3) |
O1—S1—C1—C2 | −26.27 (17) | C11—N2—C14—C15 | −178.84 (15) |
O2—S1—C1—C2 | −157.18 (15) | C13—N3—C14—N2 | −1.2 (3) |
N1—S1—C1—C2 | 93.16 (16) | C13—N3—C14—C15 | 178.36 (15) |
C6—C1—C2—C3 | −0.3 (3) | C18—N5—C15—N4 | 1.6 (3) |
S1—C1—C2—C3 | 176.65 (13) | C18—N5—C15—C14 | −177.86 (15) |
C1—C2—C3—C4 | 0.9 (3) | C16—N4—C15—N5 | −2.9 (3) |
C2—C3—C4—C5 | −0.4 (3) | C16—N4—C15—C14 | 176.55 (15) |
C2—C3—C4—C7 | 179.51 (17) | N2—C14—C15—N5 | 26.1 (2) |
C3—C4—C5—C6 | −0.7 (3) | N3—C14—C15—N5 | −153.49 (16) |
C7—C4—C5—C6 | 179.4 (2) | N2—C14—C15—N4 | −153.35 (16) |
C4—C5—C6—C1 | 1.2 (4) | N3—C14—C15—N4 | 27.0 (2) |
C2—C1—C6—C5 | −0.7 (3) | C15—N4—C16—C17 | 1.1 (3) |
S1—C1—C6—C5 | −177.78 (18) | N4—C16—C17—C18 | 1.7 (3) |
C5—C4—C7—C10 | −55.2 (3) | C15—N5—C18—C17 | 1.6 (3) |
C3—C4—C7—C10 | 124.9 (2) | C16—C17—C18—N5 | −3.1 (3) |
C5—C4—C7—C8 | −176.5 (2) | C12—O3—C19—C24 | 2.1 (2) |
C3—C4—C7—C8 | 3.7 (3) | C12—O3—C19—C20 | −177.61 (15) |
C5—C4—C7—C9 | 63.8 (3) | C25—O4—C20—C21 | −15.3 (3) |
C3—C4—C7—C9 | −116.1 (2) | C25—O4—C20—C19 | 165.06 (19) |
C14—N2—C11—N1 | −177.91 (16) | C24—C19—C20—O4 | −179.91 (16) |
C14—N2—C11—C12 | 2.5 (3) | O3—C19—C20—O4 | −0.2 (2) |
S1—N1—C11—N2 | 2.0 (3) | C24—C19—C20—C21 | 0.4 (3) |
S1—N1—C11—C12 | −178.44 (14) | O3—C19—C20—C21 | −179.89 (15) |
C19—O3—C12—C13 | 68.0 (2) | O4—C20—C21—C22 | −179.81 (18) |
C19—O3—C12—C11 | −117.88 (18) | C19—C20—C21—C22 | −0.2 (3) |
N2—C11—C12—O3 | −179.54 (16) | C20—C21—C22—C23 | 0.1 (3) |
N1—C11—C12—O3 | 0.9 (3) | C21—C22—C23—C24 | −0.2 (3) |
N2—C11—C12—C13 | −5.0 (3) | C20—C19—C24—C23 | −0.5 (3) |
N1—C11—C12—C13 | 175.48 (16) | O3—C19—C24—C23 | 179.80 (16) |
C14—N3—C13—O5 | 177.48 (16) | C22—C23—C24—C19 | 0.4 (3) |
C14—N3—C13—C12 | −1.6 (3) | C13—O5—C26—C27 | 90.58 (19) |
C26—O5—C13—N3 | 15.6 (2) | O5—C26—C27—O6 | −65.8 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N3i | 0.84 | 2.51 | 3.317 (2) | 162 |
O6—H6···N4i | 0.84 | 2.60 | 3.141 (2) | 124 |
O1W—H1W···O4 | 0.80 (2) | 2.30 (2) | 3.013 (2) | 150 (3) |
O1W—H2W···N4ii | 0.81 (2) | 2.07 (2) | 2.873 (2) | 174 (3) |
N1—H1A···O1W | 0.88 | 1.87 | 2.721 (2) | 163 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C27H29N5O6S·H2O |
Mr | 569.63 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 123 |
a, b, c (Å) | 12.3393 (4), 15.1238 (6), 14.6988 (4) |
β (°) | 95.037 (3) |
V (Å3) | 2732.46 (16) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 1.52 |
Crystal size (mm) | 0.79 × 0.43 × 0.22 |
Data collection | |
Diffractometer | Agilent Xcalibur (Ruby, Gemini) |
Absorption correction | Analytical (CrysAlis PRO; Agilent, 2012) |
Tmin, Tmax | 0.535, 0.766 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9563, 9563, 7477 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.630 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.163, 1.03 |
No. of reflections | 9563 |
No. of parameters | 373 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.44, −0.77 |
Computer programs: CrysAlis PRO (Agilent, 2012), CrysAlis RED (Agilent, 2012), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6···N3i | 0.84 | 2.51 | 3.317 (2) | 162 |
O6—H6···N4i | 0.84 | 2.60 | 3.141 (2) | 124 |
O1W—H1W···O4 | 0.795 (16) | 2.297 (19) | 3.013 (2) | 150 (3) |
O1W—H2W···N4ii | 0.805 (16) | 2.071 (16) | 2.873 (2) | 174 (3) |
N1—H1A···O1W | 0.88 | 1.87 | 2.721 (2) | 163 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, −y+1/2, z+1/2. |
Acknowledgements
MK thanks the UOM for research facilities. RJB acknowledges the NSF–MRI program (grant No. CHE-0619278) for funds to purchase the X-ray diffractometer.
References
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Bosentan (chemically, 4-tert-butyl-N-[6-(2-hydroxyethoxy)-5-(2-methoxyphenoxy) -2-(pyrimidin-2-yl)pyrimidin-4-yl]benzene-1-sulfonamide) is a dual endothelin receptor antagonist used in the treatment of pulmonary artery hypertension (PAH). Bosentan is used to treat pulmonary hypertension by blocking the action of endothelin molecules that would otherwise promote narrowing of the blood vessels and lead to high blood pressure. A review of bosentan in the management of pulmonary arterial hypertension is published (Gabbay et al., 2007). Another review on the use of bosentan in pulmonary arterial hypertension and systemic sclerosis is also published (Oldfield & Lyseng-Williamson, 2006). A spectrophotometric method for the determination of bosentan monohydrate in bulk and pharmaceutical dosage forms is reported (Kumar et al., 2011). The crystal structures of some related compounds, viz., N1-(2,6-dimethyl-4-pyrimidinyl)sulphanilamide (Singh et al., 1985), 4-[(3-formyl-4-hydroxyphenyl)diazenyl]-N-(pyrimidin-2-yl)benzenesulfonamide (El-Ghamry et al., 2008) and N-(2-{[5-bromo-2-(morpholin-4-yl)pyrimidin-4-yl]sulfanyl}-4-methoxyphenyl)- 4-methyl benzenesulfonamide (Kant et al., 2012), have been reported. In view of the importance of the title compound, (I), the paper reports its crystal structure.
In (I), the dihedral angle between the mean planes of the two pyrimidine rings is 27.0 (1)° (Fig. 1). The dihedral angle between the mean planes of the two benzene rings is 47.7 (8)° forming a U-shaped channel around the chain of twisted pyrimidine rings. Crystal packing is stabilized by O—H···O, O—H···N and N—H···O hydrogen bonds with a single water molecule and weak O—H···N intermolecular interactions between the hydroxy group and one of the nearby pyrimidine rings (Fig. 2).