organic compounds
Methyl 4′-(4-fluorophenyl)-1′-methyl-3′-nitromethyl-2-oxospiro[indoline-3,2′-pyrrolidine]-3′-carboxylate
aPost Graduate and Research Department of Physics, Queen Mary's College, Chennai-4, Tamilnadu, India, and bDepartment of Organic Chemistry, University of Madras, Maraimalai Campus, Chennai-25, Tamilnadu, India
*Correspondence e-mail: guqmc@yahoo.com
In the title compound, C21H20FN3O5, the the pyrrolidine ring makes dihedral angles of 84.91 (6) and 62.38 (7)° with the oxindole unit and the fluorophenyl ring, respectively. The pyrrolidine ring assumes an with the spiro C atom as the flap. The crystal packing features weak N—H⋯N and C—H⋯O hydrogen bonds.
Related literature
For background to pyrrolidine derivatives, see: Raj et al. (2003); Cordell (1981); Usha et al. (2005).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813001578/bh2472sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813001578/bh2472Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813001578/bh2472Isup3.cml
A mixture of (E)-methyl 3-(4-fluorophenyl)-2-(nitromethyl)acrylate (1 mmol, 0.24 g), isatin (1 mmol, 0.15 g) and sarcosine (1 mmol, 0.09 g) in acetonitrile (6 ml) was refluxed for 14 h. After completion of the reaction, as indicated by TLC, the reaction mixture was concentrated, and the resulting crude diluted with water (10 ml), and extracted with ethyl acetate (3 × 10 ml). The combined organic layers were washed with brine (2 × 10 ml) and dried over anhydrous Na2SO4. The organic layer thus obtained was concentrated under reduced pressure, and the residue was purified by
on silica gel (Acme 100–200 mesh), using ethyl acetate:hexanes (3:7), to afford the title compound as a colourless solid, in 68% yield.All H atoms were positioned geometrically and treated as riding on their parent atoms, with C—H distances in the range 0.93–0.98 Å and N2—H2A distance of 0.86 Å. Displacement parameters for H atoms were calculated as and Uiso(H) = 1.2Ueq(N, C), except for the methyl groups, for which Uiso(H) = 1.5Ueq(C).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C21H20FN3O5 | F(000) = 864 |
Mr = 413.40 | Dx = 1.362 Mg m−3 |
Orthorhombic, Pna21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2c -2n | θ = 2.2–28.0° |
a = 8.0265 (5) Å | µ = 0.10 mm−1 |
b = 25.7011 (15) Å | T = 293 K |
c = 9.7763 (6) Å | Block, colourless |
V = 2016.8 (2) Å3 | 0.20 × 0.18 × 0.18 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 2551 independent reflections |
Radiation source: fine-focus sealed tube | 2355 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω and ϕ scan | θmax = 28.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→10 |
Tmin = 0.979, Tmax = 0.981 | k = −33→33 |
22124 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3 |
2551 reflections | (Δ/σ)max < 0.001 |
271 parameters | Δρmax = 0.30 e Å−3 |
1 restraint | Δρmin = −0.16 e Å−3 |
0 constraints |
C21H20FN3O5 | V = 2016.8 (2) Å3 |
Mr = 413.40 | Z = 4 |
Orthorhombic, Pna21 | Mo Kα radiation |
a = 8.0265 (5) Å | µ = 0.10 mm−1 |
b = 25.7011 (15) Å | T = 293 K |
c = 9.7763 (6) Å | 0.20 × 0.18 × 0.18 mm |
Bruker Kappa APEXII CCD diffractometer | 2551 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2355 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.981 | Rint = 0.022 |
22124 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 1 restraint |
wR(F2) = 0.132 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.30 e Å−3 |
2551 reflections | Δρmin = −0.16 e Å−3 |
271 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3956 (3) | 0.11630 (9) | 0.1303 (3) | 0.0495 (5) | |
H1 | 0.4261 | 0.1306 | 0.2140 | 0.059* | |
C2 | 0.4898 (3) | 0.12602 (10) | 0.0138 (3) | 0.0565 (6) | |
H2 | 0.5850 | 0.1465 | 0.0206 | 0.068* | |
C3 | 0.4449 (3) | 0.10596 (11) | −0.1112 (3) | 0.0587 (6) | |
H3 | 0.5085 | 0.1137 | −0.1880 | 0.070* | |
C4 | 0.3039 (3) | 0.07382 (10) | −0.1246 (3) | 0.0547 (5) | |
H4 | 0.2729 | 0.0599 | −0.2086 | 0.066* | |
C5 | 0.2141 (3) | 0.06398 (8) | −0.0077 (3) | 0.0451 (5) | |
C6 | 0.2544 (3) | 0.08481 (7) | 0.1197 (2) | 0.0427 (4) | |
C7 | 0.0156 (3) | 0.03050 (8) | 0.1341 (3) | 0.0493 (5) | |
C8 | 0.1232 (3) | 0.06782 (7) | 0.2227 (2) | 0.0411 (4) | |
C9 | 0.2291 (3) | 0.08136 (9) | 0.4461 (3) | 0.0514 (5) | |
H9A | 0.3491 | 0.0856 | 0.4421 | 0.062* | |
H9B | 0.1982 | 0.0717 | 0.5386 | 0.062* | |
C10 | 0.1406 (2) | 0.13220 (7) | 0.4033 (2) | 0.0390 (4) | |
H10 | 0.2258 | 0.1548 | 0.3629 | 0.047* | |
C11 | 0.0209 (2) | 0.11542 (7) | 0.2839 (2) | 0.0365 (4) | |
C12 | 0.0607 (3) | 0.16266 (9) | 0.5181 (2) | 0.0456 (5) | |
C13 | 0.0601 (4) | 0.21706 (11) | 0.5106 (3) | 0.0588 (6) | |
H13 | 0.1131 | 0.2333 | 0.4375 | 0.071* | |
C14 | −0.0166 (5) | 0.24707 (14) | 0.6083 (4) | 0.0829 (11) | |
H14 | −0.0177 | 0.2832 | 0.6014 | 0.099* | |
C15 | −0.0913 (5) | 0.2224 (2) | 0.7158 (4) | 0.0902 (13) | |
C16 | −0.0913 (5) | 0.1694 (2) | 0.7311 (3) | 0.0904 (13) | |
H16 | −0.1425 | 0.1539 | 0.8060 | 0.109* | |
C17 | −0.0125 (4) | 0.13928 (14) | 0.6316 (3) | 0.0628 (7) | |
H17 | −0.0088 | 0.1033 | 0.6412 | 0.075* | |
C18 | −0.1491 (3) | 0.09642 (8) | 0.3340 (2) | 0.0466 (5) | |
H18A | −0.2032 | 0.0778 | 0.2601 | 0.056* | |
H18B | −0.1318 | 0.0720 | 0.4082 | 0.056* | |
C19 | −0.0041 (3) | 0.15462 (7) | 0.1679 (2) | 0.0390 (4) | |
C20 | 0.0779 (4) | 0.23421 (12) | 0.0716 (4) | 0.0769 (10) | |
H20A | 0.1486 | 0.2634 | 0.0914 | 0.115* | |
H20B | −0.0350 | 0.2459 | 0.0619 | 0.115* | |
H20C | 0.1137 | 0.2180 | −0.0119 | 0.115* | |
C21 | 0.2968 (4) | −0.00037 (11) | 0.3289 (4) | 0.0769 (9) | |
H21A | 0.3231 | −0.0156 | 0.4159 | 0.115* | |
H21B | 0.3961 | 0.0138 | 0.2889 | 0.115* | |
H21C | 0.2515 | −0.0265 | 0.2694 | 0.115* | |
N1 | 0.1739 (3) | 0.04125 (7) | 0.3481 (2) | 0.0503 (4) | |
N2 | 0.0717 (2) | 0.03194 (7) | 0.0047 (2) | 0.0506 (5) | |
H2A | 0.0266 | 0.0154 | −0.0622 | 0.061* | |
N3 | −0.2642 (2) | 0.13883 (9) | 0.3830 (2) | 0.0558 (5) | |
O1 | −0.0977 (3) | 0.00319 (8) | 0.1779 (2) | 0.0701 (6) | |
O2 | −0.0938 (2) | 0.14544 (7) | 0.0731 (2) | 0.0534 (4) | |
O3 | 0.0879 (2) | 0.19697 (6) | 0.18238 (18) | 0.0467 (4) | |
O4 | −0.3674 (3) | 0.12634 (12) | 0.4665 (3) | 0.0891 (8) | |
O5 | −0.2541 (3) | 0.18170 (9) | 0.3327 (3) | 0.0725 (6) | |
F | −0.1702 (4) | 0.25155 (16) | 0.8126 (3) | 0.1407 (14) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0430 (10) | 0.0469 (11) | 0.0586 (13) | −0.0016 (9) | −0.0007 (10) | −0.0078 (10) |
C2 | 0.0408 (10) | 0.0505 (12) | 0.0781 (17) | −0.0041 (9) | 0.0071 (11) | −0.0067 (12) |
C3 | 0.0542 (12) | 0.0576 (13) | 0.0644 (15) | −0.0041 (10) | 0.0159 (12) | −0.0052 (12) |
C4 | 0.0578 (12) | 0.0523 (12) | 0.0539 (12) | −0.0018 (10) | 0.0035 (11) | −0.0060 (10) |
C5 | 0.0449 (10) | 0.0352 (9) | 0.0553 (12) | 0.0008 (8) | 0.0011 (9) | −0.0069 (9) |
C6 | 0.0434 (10) | 0.0346 (9) | 0.0501 (11) | 0.0033 (7) | −0.0005 (9) | 0.0002 (8) |
C7 | 0.0603 (12) | 0.0302 (9) | 0.0573 (13) | −0.0074 (8) | 0.0015 (11) | −0.0072 (9) |
C8 | 0.0477 (10) | 0.0302 (8) | 0.0455 (10) | −0.0024 (7) | −0.0014 (9) | −0.0011 (8) |
C9 | 0.0537 (11) | 0.0453 (11) | 0.0551 (12) | −0.0007 (10) | −0.0151 (11) | 0.0084 (10) |
C10 | 0.0439 (9) | 0.0360 (8) | 0.0371 (9) | −0.0064 (7) | −0.0058 (8) | 0.0027 (7) |
C11 | 0.0409 (9) | 0.0321 (8) | 0.0364 (9) | −0.0035 (7) | −0.0031 (7) | −0.0007 (7) |
C12 | 0.0476 (10) | 0.0525 (12) | 0.0369 (10) | −0.0055 (9) | −0.0060 (9) | −0.0045 (9) |
C13 | 0.0703 (15) | 0.0514 (13) | 0.0546 (14) | −0.0030 (11) | −0.0120 (12) | −0.0122 (11) |
C14 | 0.099 (2) | 0.080 (2) | 0.070 (2) | 0.0254 (18) | −0.0267 (18) | −0.0332 (18) |
C15 | 0.083 (2) | 0.133 (4) | 0.0544 (17) | 0.037 (2) | −0.0180 (16) | −0.039 (2) |
C16 | 0.0714 (19) | 0.161 (4) | 0.0392 (13) | 0.000 (2) | 0.0035 (13) | −0.0025 (19) |
C17 | 0.0645 (15) | 0.0838 (19) | 0.0401 (12) | −0.0096 (13) | −0.0040 (11) | 0.0066 (12) |
C18 | 0.0481 (10) | 0.0426 (10) | 0.0491 (11) | −0.0088 (8) | 0.0016 (10) | −0.0030 (9) |
C19 | 0.0414 (9) | 0.0357 (9) | 0.0397 (10) | 0.0009 (7) | −0.0033 (8) | 0.0013 (8) |
C20 | 0.089 (2) | 0.0620 (16) | 0.079 (2) | −0.0208 (14) | −0.0223 (17) | 0.0373 (16) |
C21 | 0.087 (2) | 0.0523 (14) | 0.091 (2) | 0.0249 (14) | −0.002 (2) | 0.0125 (14) |
N1 | 0.0629 (11) | 0.0336 (8) | 0.0543 (10) | 0.0054 (8) | −0.0047 (9) | 0.0061 (8) |
N2 | 0.0552 (10) | 0.0433 (10) | 0.0532 (11) | −0.0086 (7) | 0.0016 (9) | −0.0114 (8) |
N3 | 0.0382 (9) | 0.0719 (13) | 0.0573 (12) | −0.0055 (8) | −0.0024 (9) | −0.0161 (11) |
O1 | 0.0878 (13) | 0.0495 (10) | 0.0729 (12) | −0.0332 (9) | 0.0181 (11) | −0.0134 (9) |
O2 | 0.0571 (9) | 0.0571 (9) | 0.0460 (9) | −0.0035 (7) | −0.0132 (8) | 0.0043 (7) |
O3 | 0.0568 (8) | 0.0361 (7) | 0.0472 (8) | −0.0059 (6) | −0.0068 (7) | 0.0092 (6) |
O4 | 0.0599 (11) | 0.1159 (19) | 0.0916 (18) | −0.0154 (12) | 0.0277 (12) | −0.0243 (16) |
O5 | 0.0721 (12) | 0.0647 (11) | 0.0806 (14) | 0.0173 (9) | 0.0032 (11) | −0.0056 (11) |
F | 0.131 (2) | 0.222 (4) | 0.0689 (15) | 0.078 (2) | −0.0131 (14) | −0.0631 (18) |
C1—C2 | 1.389 (4) | C12—C13 | 1.400 (4) |
C1—C6 | 1.396 (3) | C13—C14 | 1.374 (4) |
C1—H1 | 0.9300 | C13—H13 | 0.9300 |
C2—C3 | 1.375 (4) | C14—C15 | 1.365 (7) |
C2—H2 | 0.9300 | C14—H14 | 0.9300 |
C3—C4 | 1.407 (3) | C15—F | 1.363 (4) |
C3—H3 | 0.9300 | C15—C16 | 1.372 (7) |
C4—C5 | 1.374 (3) | C16—C17 | 1.394 (5) |
C4—H4 | 0.9300 | C16—H16 | 0.9300 |
C5—C6 | 1.394 (3) | C17—H17 | 0.9300 |
C5—N2 | 1.414 (3) | C18—N3 | 1.507 (3) |
C6—C8 | 1.521 (3) | C18—H18A | 0.9700 |
C7—O1 | 1.226 (3) | C18—H18B | 0.9700 |
C7—N2 | 1.343 (3) | C19—O2 | 1.196 (3) |
C7—C8 | 1.554 (3) | C19—O3 | 1.323 (2) |
C8—N1 | 1.460 (3) | C20—O3 | 1.447 (3) |
C8—C11 | 1.590 (3) | C20—H20A | 0.9600 |
C9—N1 | 1.476 (3) | C20—H20B | 0.9600 |
C9—C10 | 1.545 (3) | C20—H20C | 0.9600 |
C9—H9A | 0.9700 | C21—N1 | 1.467 (3) |
C9—H9B | 0.9700 | C21—H21A | 0.9600 |
C10—C12 | 1.511 (3) | C21—H21B | 0.9600 |
C10—C11 | 1.573 (3) | C21—H21C | 0.9600 |
C10—H10 | 0.9800 | N2—H2A | 0.8600 |
C11—C18 | 1.529 (3) | N3—O4 | 1.207 (3) |
C11—C19 | 1.530 (3) | N3—O5 | 1.209 (3) |
C12—C17 | 1.392 (4) | ||
C2—C1—C6 | 119.0 (2) | C13—C12—C10 | 118.7 (2) |
C2—C1—H1 | 120.5 | C14—C13—C12 | 121.7 (3) |
C6—C1—H1 | 120.5 | C14—C13—H13 | 119.1 |
C3—C2—C1 | 121.2 (2) | C12—C13—H13 | 119.1 |
C3—C2—H2 | 119.4 | C15—C14—C13 | 118.1 (3) |
C1—C2—H2 | 119.4 | C15—C14—H14 | 120.9 |
C2—C3—C4 | 120.9 (2) | C13—C14—H14 | 120.9 |
C2—C3—H3 | 119.5 | F—C15—C14 | 119.0 (4) |
C4—C3—H3 | 119.5 | F—C15—C16 | 118.0 (4) |
C5—C4—C3 | 116.9 (2) | C14—C15—C16 | 123.0 (3) |
C5—C4—H4 | 121.6 | C15—C16—C17 | 118.4 (4) |
C3—C4—H4 | 121.6 | C15—C16—H16 | 120.8 |
C4—C5—C6 | 123.4 (2) | C17—C16—H16 | 120.8 |
C4—C5—N2 | 127.0 (2) | C12—C17—C16 | 120.5 (4) |
C6—C5—N2 | 109.5 (2) | C12—C17—H17 | 119.7 |
C5—C6—C1 | 118.5 (2) | C16—C17—H17 | 119.7 |
C5—C6—C8 | 108.73 (18) | N3—C18—C11 | 114.69 (17) |
C1—C6—C8 | 132.8 (2) | N3—C18—H18A | 108.6 |
O1—C7—N2 | 126.4 (2) | C11—C18—H18A | 108.6 |
O1—C7—C8 | 124.8 (2) | N3—C18—H18B | 108.6 |
N2—C7—C8 | 108.78 (19) | C11—C18—H18B | 108.6 |
N1—C8—C6 | 119.80 (19) | H18A—C18—H18B | 107.6 |
N1—C8—C7 | 109.50 (17) | O2—C19—O3 | 125.5 (2) |
C6—C8—C7 | 101.10 (18) | O2—C19—C11 | 121.53 (18) |
N1—C8—C11 | 100.84 (17) | O3—C19—C11 | 112.90 (17) |
C6—C8—C11 | 112.69 (16) | O3—C20—H20A | 109.5 |
C7—C8—C11 | 113.42 (18) | O3—C20—H20B | 109.5 |
N1—C9—C10 | 106.07 (17) | H20A—C20—H20B | 109.5 |
N1—C9—H9A | 110.5 | O3—C20—H20C | 109.5 |
C10—C9—H9A | 110.5 | H20A—C20—H20C | 109.5 |
N1—C9—H9B | 110.5 | H20B—C20—H20C | 109.5 |
C10—C9—H9B | 110.5 | N1—C21—H21A | 109.5 |
H9A—C9—H9B | 108.7 | N1—C21—H21B | 109.5 |
C12—C10—C9 | 115.6 (2) | H21A—C21—H21B | 109.5 |
C12—C10—C11 | 115.70 (16) | N1—C21—H21C | 109.5 |
C9—C10—C11 | 104.48 (16) | H21A—C21—H21C | 109.5 |
C12—C10—H10 | 106.8 | H21B—C21—H21C | 109.5 |
C9—C10—H10 | 106.8 | C8—N1—C21 | 114.9 (2) |
C11—C10—H10 | 106.8 | C8—N1—C9 | 107.58 (16) |
C18—C11—C19 | 109.31 (17) | C21—N1—C9 | 113.0 (2) |
C18—C11—C10 | 113.27 (17) | C7—N2—C5 | 111.58 (19) |
C19—C11—C10 | 116.74 (15) | C7—N2—H2A | 124.2 |
C18—C11—C8 | 109.60 (16) | C5—N2—H2A | 124.2 |
C19—C11—C8 | 107.18 (16) | O4—N3—O5 | 124.3 (3) |
C10—C11—C8 | 100.04 (15) | O4—N3—C18 | 116.3 (2) |
C17—C12—C13 | 118.1 (3) | O5—N3—C18 | 119.3 (2) |
C17—C12—C10 | 123.2 (2) | C19—O3—C20 | 115.7 (2) |
C6—C1—C2—C3 | 1.1 (4) | C9—C10—C12—C17 | −34.3 (3) |
C1—C2—C3—C4 | −1.6 (4) | C11—C10—C12—C17 | 88.4 (3) |
C2—C3—C4—C5 | 0.4 (4) | C9—C10—C12—C13 | 145.6 (2) |
C3—C4—C5—C6 | 1.2 (4) | C11—C10—C12—C13 | −91.8 (2) |
C3—C4—C5—N2 | −178.1 (2) | C17—C12—C13—C14 | −3.0 (4) |
C4—C5—C6—C1 | −1.7 (3) | C10—C12—C13—C14 | 177.2 (2) |
N2—C5—C6—C1 | 177.79 (19) | C12—C13—C14—C15 | 1.0 (5) |
C4—C5—C6—C8 | 177.1 (2) | C13—C14—C15—F | −179.0 (3) |
N2—C5—C6—C8 | −3.4 (2) | C13—C14—C15—C16 | 0.8 (5) |
C2—C1—C6—C5 | 0.5 (3) | F—C15—C16—C17 | 179.3 (3) |
C2—C1—C6—C8 | −177.9 (2) | C14—C15—C16—C17 | −0.6 (5) |
C5—C6—C8—N1 | 125.3 (2) | C13—C12—C17—C16 | 3.2 (4) |
C1—C6—C8—N1 | −56.2 (3) | C10—C12—C17—C16 | −177.0 (3) |
C5—C6—C8—C7 | 5.0 (2) | C15—C16—C17—C12 | −1.5 (5) |
C1—C6—C8—C7 | −176.4 (2) | C19—C11—C18—N3 | −57.6 (2) |
C5—C6—C8—C11 | −116.37 (19) | C10—C11—C18—N3 | 74.4 (2) |
C1—C6—C8—C11 | 62.2 (3) | C8—C11—C18—N3 | −174.82 (19) |
O1—C7—C8—N1 | 45.3 (3) | C18—C11—C19—O2 | −49.3 (3) |
N2—C7—C8—N1 | −132.4 (2) | C10—C11—C19—O2 | −179.5 (2) |
O1—C7—C8—C6 | 172.7 (2) | C8—C11—C19—O2 | 69.4 (3) |
N2—C7—C8—C6 | −5.1 (2) | C18—C11—C19—O3 | 133.43 (19) |
O1—C7—C8—C11 | −66.4 (3) | C10—C11—C19—O3 | 3.2 (2) |
N2—C7—C8—C11 | 115.8 (2) | C8—C11—C19—O3 | −107.87 (19) |
N1—C9—C10—C12 | 133.5 (2) | C6—C8—N1—C21 | −45.7 (3) |
N1—C9—C10—C11 | 5.2 (2) | C7—C8—N1—C21 | 70.3 (3) |
C12—C10—C11—C18 | −41.3 (2) | C11—C8—N1—C21 | −169.9 (2) |
C9—C10—C11—C18 | 87.1 (2) | C6—C8—N1—C9 | 81.1 (2) |
C12—C10—C11—C19 | 87.0 (2) | C7—C8—N1—C9 | −162.96 (19) |
C9—C10—C11—C19 | −144.63 (19) | C11—C8—N1—C9 | −43.2 (2) |
C12—C10—C11—C8 | −157.81 (18) | C10—C9—N1—C8 | 24.4 (2) |
C9—C10—C11—C8 | −29.5 (2) | C10—C9—N1—C21 | 152.3 (2) |
N1—C8—C11—C18 | −75.4 (2) | O1—C7—N2—C5 | −174.3 (3) |
C6—C8—C11—C18 | 155.62 (19) | C8—C7—N2—C5 | 3.4 (3) |
C7—C8—C11—C18 | 41.5 (2) | C4—C5—N2—C7 | 179.4 (2) |
N1—C8—C11—C19 | 166.04 (16) | C6—C5—N2—C7 | 0.0 (3) |
C6—C8—C11—C19 | 37.1 (2) | C11—C18—N3—O4 | −153.5 (2) |
C7—C8—C11—C19 | −77.0 (2) | C11—C18—N3—O5 | 30.2 (3) |
N1—C8—C11—C10 | 43.83 (18) | O2—C19—O3—C20 | −0.8 (4) |
C6—C8—C11—C10 | −85.1 (2) | C11—C19—O3—C20 | 176.3 (2) |
C7—C8—C11—C10 | 160.79 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N1i | 0.86 | 2.34 | 3.127 (2) | 152 |
C4—H4···O1i | 0.93 | 2.42 | 3.223 (2) | 145 |
C9—H9B···O1ii | 0.97 | 2.49 | 3.314 (2) | 142 |
C9—H9A···O4iii | 0.97 | 2.51 | 3.443 (3) | 160 |
Symmetry codes: (i) −x, −y, z−1/2; (ii) −x, −y, z+1/2; (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C21H20FN3O5 |
Mr | 413.40 |
Crystal system, space group | Orthorhombic, Pna21 |
Temperature (K) | 293 |
a, b, c (Å) | 8.0265 (5), 25.7011 (15), 9.7763 (6) |
V (Å3) | 2016.8 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.18 × 0.18 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.979, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22124, 2551, 2355 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.661 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.047, 0.132, 1.13 |
No. of reflections | 2551 |
No. of parameters | 271 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.16 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2A···N1i | 0.86 | 2.34 | 3.127 (2) | 151.8 |
C4—H4···O1i | 0.93 | 2.42 | 3.223 (2) | 145.0 |
C9—H9B···O1ii | 0.97 | 2.49 | 3.314 (2) | 142.1 |
C9—H9A···O4iii | 0.97 | 2.51 | 3.443 (3) | 160.2 |
Symmetry codes: (i) −x, −y, z−1/2; (ii) −x, −y, z+1/2; (iii) x+1, y, z. |
Acknowledgements
The authors thank Professor D. Velmurugan (Centre for Advanced Study in Crystallography and Biophysics, University of Madras) for providing data collection and computer facilities.
References
Bruker (2004). APEX2, SAINT, XPREP and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cordell, G. A. (1981). In Introduction to Alkaloids: A Biogenetic Approach. New York: Wiley International. Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
Raj, A. A., Raghunathan, R., SrideviKumari, M. R. & Raman, N. (2003). Bioorg. Med. Chem. 11, 407–419. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Usha, G., Selvanayagam, S., Velmurugan, D., Ravikumar, K., Jaisankar, P. & Srinivasan, P. C. (2005). Acta Cryst. E61, o2227–o2229. Web of Science CSD CrossRef IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyrrolidine ring system is a frequently encountered structural motif in many biologically relevant alkaloids (Cordell, 1981). Substituted pyrrolidines possess anti-microbial and anti-fungal activity against various pathogens (Raj et al., 2003). In the title compound (Fig. 1), the N—C and C—C bond lengths are slightly longer than the normal values, but are comparable with those in other reported structures (e.g. Usha et al., 2005). This may be due to the spiro-atom character and the steric forces of bulky substituents in the pyrrolidine moiety. Bond length C7—O1, 1.226 (3) Å, indicates a keto group character. The dihedral angle [84.91 (6)°] between oxindole moiety and pyrrolidine ring shows that they are almost orthogonal to each other. The sum of the angles around N2 atom, 360.0°, and N3 atom, 359.9°, is an indication of their sp2 hybridization. The O atoms of the nitro group have somewhat higher displacement parameters than the other atoms, indicating greater thermal motion for these atoms. The pyrrolidine ring adopts envelope conformation, with C8 as the flap.
The crystal packing is stabilized by weak N—H···N and C—H···O hydrogen bonds. The symmetry-related molecules linked through alternate N—H···N and C—H···O type hydrogen bonds are forming loops. These units running along [001] form molecular chains, which are connected by C—H···O hydrogen bonds, resulting in molecular layers (Fig. 2).