organic compounds
2,4,6,8-Tetrakis(2-fluorophenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one
aDepartment of Biomedicinal Chemistry, Inje University, Gimhae, Gyeongnam 621 749, Republic of Korea, and bDepartment of Chemistry, IIT Madras, Chennai 600 036, TamilNadu, India
*Correspondence e-mail: parthisivam@yahoo.co.in
The title compound, C31H24F4N2O, exists in a chair–boat conformation with an equatorial orientation of the 2-fluorophenyl groups on both sides of the secondary amino group of the chair form. The benzene rings in the `chair' part are inclined to each other at 19.4 (1)°, while the equivalent angle between the benzene rings in the `boat' part is 75.6 (1)°. One F atom was treated as disordered over two positions in a 0.838 (4):0.162 (4) ratio. In the crystal, N—H⋯O hydrogen bonds link the molecules into chains along [001] and these chains are held together via weak N—H⋯F and C—H⋯F interactions.
Related literature
For the synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-ones, see: Parthiban et al. (2008). For the biological activity of 3,7-diazabicyclo[3.3.1]nonan-9-one derivatives and related structures, see: Park et al. (2012); Parthiban et al. (2009, 2010); Asakawa (1995); Jeyaraman & Avila (1981). For ring puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell SAINT (Bruker, 2004); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536812051574/cv5368sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536812051574/cv5368Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536812051574/cv5368Isup3.cml
The 2,4,6,8-tetrakis(2-fluorophenyl)-3,7-diazabicyclo[3.3.1] nonan-9-one was synthesized by successive Mannich condensations in one-pot, using 2-fluorobenzaldehyde (0.2 mol, 21 ml), acetone (0.05 mol, 3.7 ml) and ammonium acetate (0.1 mol, 7.7 g) in a 50 ml of absolute ethanol (Parthiban et al., 2008). The mixture was gently warmed on a hot plate at 303 K (30° C) with moderate stirring till the complete consumption of the starting materials, which was monitored by TLC. At the end, the crude 3,7-diazabicycle was separated by filtration and gently washed with 1:5 cold ethanol-ether mixture. The X-ray diffraction quality crystals of pure 2,4,6,8- tetrakis(2-fluorophenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one was obtained by slow evaporation from ethanol.
N-bound H atoms were located in a difference Fourier map and refined isotropically. Other hydrogen atoms were fixed geometrically and allowed to ride on the parent carbon atoms with aromatic C—H = 0.93 Å, aliphatic C—H = 0.98 Å and methylene C—H = 0.97 Å. The displacement parameters were set for phenyl, methylene and aliphatic H atoms at Uiso(H) = 1.2Ueq(C) and for methyl H atoms at Uiso(H) = 1.5Ueq(C). In one of the 4-fluorophenyl group the F atom is disordered over two positions in a ratio 0.838 (4):0.162 (4).
Data collection: APEX2 (Bruker, 2004); cell
SAINT (Bruker, 2004); data reduction: SAINT (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. View of (I) showing the atomic numbering and 30% probability displacement ellipsoids. For the disordered atoms, only major part is shown. |
C31H24F4N2O | F(000) = 1072 |
Mr = 516.52 | Dx = 1.354 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 5770 reflections |
a = 12.5610 (11) Å | θ = 2.9–25.5° |
b = 15.9118 (13) Å | µ = 0.10 mm−1 |
c = 13.0221 (8) Å | T = 298 K |
β = 103.207 (3)° | Rectangular, colourless |
V = 2533.9 (3) Å3 | 0.45 × 0.35 × 0.22 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 5466 independent reflections |
Radiation source: fine-focus sealed tube | 3571 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
phi and ω scans | θmax = 28.6°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −12→16 |
Tmin = 0.955, Tmax = 0.978 | k = −21→20 |
18116 measured reflections | l = −17→13 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0766P)2 + 0.6943P] where P = (Fo2 + 2Fc2)/3 |
5466 reflections | (Δ/σ)max < 0.001 |
361 parameters | Δρmax = 0.48 e Å−3 |
2 restraints | Δρmin = −0.40 e Å−3 |
C31H24F4N2O | V = 2533.9 (3) Å3 |
Mr = 516.52 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.5610 (11) Å | µ = 0.10 mm−1 |
b = 15.9118 (13) Å | T = 298 K |
c = 13.0221 (8) Å | 0.45 × 0.35 × 0.22 mm |
β = 103.207 (3)° |
Bruker APEXII CCD area-detector diffractometer | 5466 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 3571 reflections with I > 2σ(I) |
Tmin = 0.955, Tmax = 0.978 | Rint = 0.024 |
18116 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 2 restraints |
wR(F2) = 0.163 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.48 e Å−3 |
5466 reflections | Δρmin = −0.40 e Å−3 |
361 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.09684 (16) | 0.22644 (12) | 0.67314 (15) | 0.0421 (5) | |
H1 | 0.1138 | 0.2839 | 0.6990 | 0.051* | |
C2 | 0.08454 (15) | 0.16959 (12) | 0.76747 (14) | 0.0396 (4) | |
H2 | 0.0282 | 0.1930 | 0.8003 | 0.048* | |
C3 | 0.05623 (15) | 0.07695 (11) | 0.73535 (14) | 0.0374 (4) | |
H3 | 0.0472 | 0.0708 | 0.6590 | 0.045* | |
C4 | 0.25113 (15) | 0.04433 (11) | 0.76060 (13) | 0.0349 (4) | |
H4 | 0.2405 | 0.0412 | 0.6838 | 0.042* | |
C5 | 0.28201 (15) | 0.13566 (11) | 0.79861 (13) | 0.0352 (4) | |
H5 | 0.3511 | 0.1355 | 0.8519 | 0.042* | |
C6 | 0.29129 (15) | 0.19517 (11) | 0.70649 (14) | 0.0374 (4) | |
H6 | 0.3062 | 0.2522 | 0.7344 | 0.045* | |
C7 | 0.19273 (16) | 0.17098 (11) | 0.84505 (14) | 0.0399 (4) | |
C8 | −0.00906 (17) | 0.22752 (13) | 0.58965 (17) | 0.0486 (5) | |
C9 | −0.02763 (19) | 0.18027 (17) | 0.49859 (18) | 0.0627 (6) | |
H9 | 0.0292 | 0.1488 | 0.4834 | 0.075* | |
C10 | −0.1295 (2) | 0.1787 (2) | 0.4290 (2) | 0.0863 (9) | |
H10 | −0.1399 | 0.1463 | 0.3681 | 0.104* | |
C11 | −0.2141 (3) | 0.2240 (3) | 0.4492 (3) | 0.0970 (11) | |
H11 | −0.2824 | 0.2219 | 0.4028 | 0.116* | |
C12 | −0.1985 (2) | 0.2725 (2) | 0.5373 (3) | 0.0974 (11) | |
H12 | −0.2554 | 0.3045 | 0.5516 | 0.117* | |
C13 | −0.0969 (2) | 0.27338 (16) | 0.6050 (2) | 0.0709 (7) | |
C14 | −0.04489 (16) | 0.04573 (13) | 0.76692 (16) | 0.0445 (5) | |
C15 | −0.0597 (2) | 0.0564 (2) | 0.86796 (19) | 0.0782 (8) | |
H15 | −0.0088 | 0.0877 | 0.9160 | 0.094* | |
C16 | −0.1475 (3) | 0.0222 (3) | 0.8997 (3) | 0.1031 (12) | |
H16 | −0.1546 | 0.0297 | 0.9687 | 0.124* | |
C17 | −0.2242 (2) | −0.0226 (2) | 0.8300 (3) | 0.0946 (10) | |
H17 | −0.2842 | −0.0449 | 0.8511 | 0.113* | |
C18 | −0.2129 (2) | −0.0345 (2) | 0.7304 (3) | 0.0840 (9) | |
H18 | −0.2647 | −0.0652 | 0.6825 | 0.101* | |
C19 | −0.1239 (2) | −0.00066 (16) | 0.70106 (19) | 0.0620 (6) | |
C20 | 0.33704 (15) | −0.01785 (11) | 0.81200 (15) | 0.0390 (4) | |
C22 | 0.4343 (2) | −0.09151 (15) | 0.9675 (2) | 0.0670 (7) | |
H22 | 0.4433 | −0.1027 | 1.0391 | 0.080* | |
C23 | 0.4977 (2) | −0.13167 (15) | 0.9108 (3) | 0.0787 (9) | |
H23 | 0.5507 | −0.1698 | 0.9436 | 0.094* | |
C24 | 0.4831 (2) | −0.11565 (16) | 0.8054 (3) | 0.0785 (8) | |
H24 | 0.5269 | −0.1419 | 0.7662 | 0.094* | |
C26 | 0.38407 (15) | 0.16825 (11) | 0.65687 (14) | 0.0396 (4) | |
C27 | 0.49103 (17) | 0.17460 (13) | 0.71274 (16) | 0.0470 (5) | |
C28 | 0.57966 (19) | 0.15100 (16) | 0.6745 (2) | 0.0643 (6) | |
H28 | 0.6503 | 0.1554 | 0.7159 | 0.077* | |
C29 | 0.5608 (2) | 0.12072 (17) | 0.5734 (2) | 0.0706 (7) | |
H29 | 0.6194 | 0.1053 | 0.5449 | 0.085* | |
C30 | 0.4567 (2) | 0.11314 (17) | 0.5146 (2) | 0.0656 (6) | |
H30 | 0.4446 | 0.0920 | 0.4464 | 0.079* | |
C31 | 0.36851 (18) | 0.13667 (13) | 0.55559 (16) | 0.0501 (5) | |
H31 | 0.2979 | 0.1311 | 0.5144 | 0.060* | |
F1 | −0.08125 (15) | 0.32238 (11) | 0.69330 (16) | 0.1080 (6) | |
F2 | −0.11291 (17) | −0.01465 (15) | 0.60175 (14) | 0.1208 (8) | |
F4 | 0.50996 (10) | 0.20708 (9) | 0.81229 (10) | 0.0628 (4) | |
N1 | 0.18692 (13) | 0.19524 (10) | 0.63013 (13) | 0.0407 (4) | |
H1N | 0.1914 (17) | 0.2264 (13) | 0.5771 (17) | 0.047 (6)* | |
N2 | 0.14804 (12) | 0.02386 (10) | 0.79069 (12) | 0.0384 (4) | |
H2N | 0.1312 (17) | −0.0318 (15) | 0.7762 (15) | 0.050 (6)* | |
O1 | 0.20898 (13) | 0.20153 (11) | 0.93241 (11) | 0.0625 (4) | |
C21 | 0.35739 (17) | −0.03465 (13) | 0.91879 (17) | 0.0520 (5) | |
H21 | 0.3171 | −0.0061 | 0.9594 | 0.062* | 0.838 (4) |
F3A | 0.3015 (5) | 0.0083 (4) | 0.9768 (5) | 0.082 (4) | 0.162 (4) |
C25 | 0.40231 (19) | −0.06003 (13) | 0.75767 (19) | 0.0565 (6) | |
H21A | 0.3917 | −0.0507 | 0.6855 | 0.068* | 0.162 (4) |
F3 | 0.38896 (17) | −0.04757 (12) | 0.65546 (14) | 0.0842 (8) | 0.838 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0463 (12) | 0.0347 (10) | 0.0476 (11) | 0.0057 (8) | 0.0154 (9) | 0.0037 (8) |
C2 | 0.0432 (11) | 0.0402 (10) | 0.0402 (9) | 0.0048 (8) | 0.0195 (8) | −0.0030 (8) |
C3 | 0.0368 (10) | 0.0416 (10) | 0.0351 (9) | 0.0020 (8) | 0.0110 (8) | −0.0013 (7) |
C4 | 0.0377 (10) | 0.0348 (9) | 0.0342 (9) | −0.0026 (7) | 0.0123 (8) | −0.0016 (7) |
C5 | 0.0386 (11) | 0.0348 (9) | 0.0324 (8) | −0.0029 (7) | 0.0084 (8) | 0.0012 (7) |
C6 | 0.0406 (11) | 0.0327 (9) | 0.0404 (9) | −0.0012 (8) | 0.0126 (8) | 0.0032 (8) |
C7 | 0.0518 (12) | 0.0342 (9) | 0.0371 (9) | −0.0029 (8) | 0.0169 (9) | −0.0018 (8) |
C8 | 0.0435 (12) | 0.0481 (11) | 0.0574 (12) | 0.0114 (9) | 0.0178 (10) | 0.0172 (10) |
C9 | 0.0527 (14) | 0.0828 (17) | 0.0510 (12) | 0.0133 (12) | 0.0084 (11) | 0.0049 (12) |
C10 | 0.0658 (19) | 0.121 (3) | 0.0641 (16) | 0.0033 (18) | −0.0028 (14) | 0.0096 (16) |
C11 | 0.0544 (19) | 0.126 (3) | 0.101 (2) | 0.0119 (18) | −0.0019 (17) | 0.035 (2) |
C12 | 0.0531 (18) | 0.102 (2) | 0.137 (3) | 0.0391 (16) | 0.0203 (19) | 0.038 (2) |
C13 | 0.0689 (18) | 0.0603 (15) | 0.0879 (18) | 0.0262 (13) | 0.0271 (15) | 0.0130 (14) |
C14 | 0.0338 (11) | 0.0501 (11) | 0.0490 (11) | 0.0006 (9) | 0.0086 (9) | 0.0004 (9) |
C15 | 0.0657 (17) | 0.117 (2) | 0.0589 (14) | −0.0358 (16) | 0.0284 (13) | −0.0164 (15) |
C16 | 0.085 (2) | 0.154 (3) | 0.087 (2) | −0.048 (2) | 0.0537 (18) | −0.024 (2) |
C17 | 0.0587 (18) | 0.118 (3) | 0.118 (3) | −0.0284 (17) | 0.0429 (18) | −0.008 (2) |
C18 | 0.0473 (16) | 0.099 (2) | 0.103 (2) | −0.0296 (14) | 0.0103 (15) | −0.0190 (17) |
C19 | 0.0531 (15) | 0.0736 (16) | 0.0579 (14) | −0.0078 (12) | 0.0097 (11) | −0.0140 (12) |
C20 | 0.0347 (10) | 0.0317 (9) | 0.0517 (11) | −0.0046 (7) | 0.0121 (9) | −0.0001 (8) |
C22 | 0.0588 (16) | 0.0522 (14) | 0.0775 (16) | −0.0064 (12) | −0.0104 (13) | 0.0168 (12) |
C23 | 0.0567 (17) | 0.0413 (13) | 0.123 (3) | 0.0055 (11) | −0.0104 (16) | 0.0058 (15) |
C24 | 0.0616 (17) | 0.0480 (14) | 0.130 (3) | 0.0146 (12) | 0.0307 (17) | −0.0136 (16) |
C26 | 0.0418 (11) | 0.0355 (10) | 0.0441 (10) | −0.0014 (8) | 0.0149 (9) | 0.0092 (8) |
C27 | 0.0459 (13) | 0.0471 (11) | 0.0482 (11) | −0.0043 (9) | 0.0109 (9) | 0.0076 (9) |
C28 | 0.0394 (13) | 0.0721 (16) | 0.0820 (17) | 0.0034 (11) | 0.0151 (12) | 0.0116 (13) |
C29 | 0.0545 (16) | 0.0823 (18) | 0.0846 (18) | 0.0079 (13) | 0.0359 (14) | −0.0012 (15) |
C30 | 0.0631 (17) | 0.0791 (17) | 0.0621 (14) | 0.0056 (13) | 0.0299 (12) | −0.0059 (12) |
C31 | 0.0462 (12) | 0.0595 (13) | 0.0476 (11) | 0.0002 (10) | 0.0167 (9) | 0.0028 (10) |
F1 | 0.1086 (14) | 0.0917 (12) | 0.1292 (15) | 0.0536 (11) | 0.0388 (11) | −0.0123 (11) |
F2 | 0.1206 (16) | 0.1637 (19) | 0.0805 (11) | −0.0621 (14) | 0.0277 (11) | −0.0527 (12) |
F4 | 0.0538 (8) | 0.0760 (9) | 0.0545 (8) | −0.0110 (6) | 0.0040 (6) | 0.0014 (6) |
N1 | 0.0402 (10) | 0.0455 (9) | 0.0387 (8) | 0.0055 (7) | 0.0140 (7) | 0.0106 (7) |
N2 | 0.0350 (9) | 0.0349 (9) | 0.0468 (9) | −0.0021 (7) | 0.0123 (7) | 0.0028 (7) |
O1 | 0.0697 (11) | 0.0749 (11) | 0.0451 (8) | −0.0027 (8) | 0.0179 (7) | −0.0241 (7) |
C21 | 0.0460 (13) | 0.0501 (12) | 0.0568 (13) | −0.0031 (10) | 0.0054 (10) | 0.0101 (10) |
F3A | 0.092 (8) | 0.107 (8) | 0.047 (5) | 0.011 (6) | 0.015 (5) | 0.019 (5) |
C25 | 0.0596 (14) | 0.0415 (11) | 0.0733 (15) | 0.0040 (10) | 0.0254 (12) | −0.0051 (10) |
F3 | 0.1167 (17) | 0.0793 (13) | 0.0713 (12) | 0.0305 (11) | 0.0522 (11) | −0.0031 (9) |
C1—N1 | 1.459 (2) | C15—H15 | 0.9300 |
C1—C8 | 1.514 (3) | C16—C17 | 1.364 (4) |
C1—C2 | 1.561 (3) | C16—H16 | 0.9300 |
C1—H1 | 0.9800 | C17—C18 | 1.350 (4) |
C2—C7 | 1.497 (3) | C17—H17 | 0.9300 |
C2—C3 | 1.551 (3) | C18—C19 | 1.373 (4) |
C2—H2 | 0.9800 | C18—H18 | 0.9300 |
C3—N2 | 1.478 (2) | C19—F2 | 1.350 (3) |
C3—C14 | 1.506 (3) | C20—C25 | 1.374 (3) |
C3—H3 | 0.9800 | C20—C21 | 1.381 (3) |
C4—N2 | 1.473 (2) | C22—C23 | 1.363 (4) |
C4—C20 | 1.504 (3) | C22—C21 | 1.369 (3) |
C4—C5 | 1.555 (2) | C22—H22 | 0.9300 |
C4—H4 | 0.9800 | C23—C24 | 1.366 (4) |
C5—C7 | 1.500 (3) | C23—H23 | 0.9300 |
C5—C6 | 1.553 (2) | C24—C25 | 1.382 (3) |
C5—H5 | 0.9800 | C24—H24 | 0.9300 |
C6—N1 | 1.453 (2) | C26—C27 | 1.378 (3) |
C6—C26 | 1.518 (3) | C26—C31 | 1.383 (3) |
C6—H6 | 0.9800 | C27—F4 | 1.365 (2) |
C7—O1 | 1.211 (2) | C27—C28 | 1.371 (3) |
C8—C13 | 1.375 (3) | C28—C29 | 1.371 (4) |
C8—C9 | 1.378 (3) | C28—H28 | 0.9300 |
C9—C10 | 1.389 (3) | C29—C30 | 1.362 (3) |
C9—H9 | 0.9300 | C29—H29 | 0.9300 |
C10—C11 | 1.358 (4) | C30—C31 | 1.386 (3) |
C10—H10 | 0.9300 | C30—H30 | 0.9300 |
C11—C12 | 1.360 (5) | C31—H31 | 0.9300 |
C11—H11 | 0.9300 | N1—H1N | 0.86 (2) |
C12—C13 | 1.376 (4) | N2—H2N | 0.92 (2) |
C12—H12 | 0.9300 | C21—F3A | 1.331 (2) |
C13—F1 | 1.366 (3) | C21—H21 | 0.9300 |
C14—C19 | 1.370 (3) | C25—F3 | 1.318 (3) |
C14—C15 | 1.381 (3) | C25—H21A | 0.9300 |
C15—C16 | 1.376 (3) | ||
N1—C1—C8 | 111.06 (16) | C14—C15—H15 | 119.0 |
N1—C1—C2 | 109.24 (15) | C17—C16—C15 | 120.0 (3) |
C8—C1—C2 | 110.06 (16) | C17—C16—H16 | 120.0 |
N1—C1—H1 | 108.8 | C15—C16—H16 | 120.0 |
C8—C1—H1 | 108.8 | C18—C17—C16 | 120.0 (3) |
C2—C1—H1 | 108.8 | C18—C17—H17 | 120.0 |
C7—C2—C3 | 108.22 (15) | C16—C17—H17 | 120.0 |
C7—C2—C1 | 106.54 (15) | C17—C18—C19 | 118.9 (3) |
C3—C2—C1 | 113.34 (14) | C17—C18—H18 | 120.5 |
C7—C2—H2 | 109.5 | C19—C18—H18 | 120.5 |
C3—C2—H2 | 109.5 | F2—C19—C14 | 118.1 (2) |
C1—C2—H2 | 109.5 | F2—C19—C18 | 118.0 (2) |
N2—C3—C14 | 106.93 (15) | C14—C19—C18 | 123.9 (2) |
N2—C3—C2 | 107.85 (15) | C25—C20—C21 | 115.4 (2) |
C14—C3—C2 | 113.30 (15) | C25—C20—C4 | 122.96 (18) |
N2—C3—H3 | 109.6 | C21—C20—C4 | 121.63 (17) |
C14—C3—H3 | 109.6 | C23—C22—C21 | 119.8 (3) |
C2—C3—H3 | 109.6 | C23—C22—H22 | 120.1 |
N2—C4—C20 | 108.73 (14) | C21—C22—H22 | 120.1 |
N2—C4—C5 | 107.01 (14) | C22—C23—C24 | 119.7 (2) |
C20—C4—C5 | 111.82 (15) | C22—C23—H23 | 120.1 |
N2—C4—H4 | 109.7 | C24—C23—H23 | 120.1 |
C20—C4—H4 | 109.7 | C23—C24—C25 | 119.2 (2) |
C5—C4—H4 | 109.7 | C23—C24—H24 | 120.4 |
C7—C5—C6 | 106.14 (14) | C25—C24—H24 | 120.4 |
C7—C5—C4 | 108.87 (14) | C27—C26—C31 | 116.01 (18) |
C6—C5—C4 | 112.39 (14) | C27—C26—C6 | 120.37 (17) |
C7—C5—H5 | 109.8 | C31—C26—C6 | 123.62 (17) |
C6—C5—H5 | 109.8 | F4—C27—C28 | 117.94 (19) |
C4—C5—H5 | 109.8 | F4—C27—C26 | 117.80 (17) |
N1—C6—C26 | 111.68 (15) | C28—C27—C26 | 124.3 (2) |
N1—C6—C5 | 108.28 (15) | C29—C28—C27 | 117.9 (2) |
C26—C6—C5 | 110.93 (15) | C29—C28—H28 | 121.0 |
N1—C6—H6 | 108.6 | C27—C28—H28 | 121.0 |
C26—C6—H6 | 108.6 | C30—C29—C28 | 120.3 (2) |
C5—C6—H6 | 108.6 | C30—C29—H29 | 119.9 |
O1—C7—C2 | 124.89 (17) | C28—C29—H29 | 119.9 |
O1—C7—C5 | 123.25 (18) | C29—C30—C31 | 120.6 (2) |
C2—C7—C5 | 111.70 (15) | C29—C30—H30 | 119.7 |
C13—C8—C9 | 115.5 (2) | C31—C30—H30 | 119.7 |
C13—C8—C1 | 120.3 (2) | C26—C31—C30 | 120.9 (2) |
C9—C8—C1 | 124.06 (18) | C26—C31—H31 | 119.5 |
C8—C9—C10 | 121.4 (2) | C30—C31—H31 | 119.5 |
C8—C9—H9 | 119.3 | C6—N1—C1 | 113.27 (15) |
C10—C9—H9 | 119.3 | C6—N1—H1N | 109.6 (14) |
C11—C10—C9 | 120.6 (3) | C1—N1—H1N | 108.1 (14) |
C11—C10—H10 | 119.7 | C4—N2—C3 | 112.30 (14) |
C9—C10—H10 | 119.7 | C4—N2—H2N | 109.5 (13) |
C10—C11—C12 | 119.7 (3) | C3—N2—H2N | 109.4 (13) |
C10—C11—H11 | 120.1 | F3A—C21—C22 | 119.0 (4) |
C12—C11—H11 | 120.1 | F3A—C21—C20 | 118.1 (4) |
C11—C12—C13 | 118.7 (3) | C22—C21—C20 | 122.9 (2) |
C11—C12—H12 | 120.6 | F3A—C21—H21 | 1.7 |
C13—C12—H12 | 120.6 | C22—C21—H21 | 118.6 |
F1—C13—C8 | 117.4 (2) | C20—C21—H21 | 118.6 |
F1—C13—C12 | 118.6 (3) | F3—C25—C20 | 119.6 (2) |
C8—C13—C12 | 124.0 (3) | F3—C25—C24 | 117.5 (2) |
C19—C14—C15 | 115.3 (2) | C20—C25—C24 | 123.0 (2) |
C19—C14—C3 | 122.84 (18) | F3—C25—H21A | 1.1 |
C15—C14—C3 | 121.68 (18) | C20—C25—H21A | 118.5 |
C16—C15—C14 | 122.0 (2) | C24—C25—H21A | 118.5 |
C16—C15—H15 | 119.0 | ||
N1—C1—C2—C7 | 56.93 (19) | C15—C14—C19—F2 | −178.8 (3) |
C8—C1—C2—C7 | 179.12 (15) | C3—C14—C19—F2 | −3.8 (3) |
N1—C1—C2—C3 | −62.0 (2) | C15—C14—C19—C18 | 0.5 (4) |
C8—C1—C2—C3 | 60.2 (2) | C3—C14—C19—C18 | 175.5 (2) |
C7—C2—C3—N2 | −1.65 (18) | C17—C18—C19—F2 | 178.7 (3) |
C1—C2—C3—N2 | 116.29 (16) | C17—C18—C19—C14 | −0.5 (5) |
C7—C2—C3—C14 | 116.50 (16) | N2—C4—C20—C25 | 130.75 (19) |
C1—C2—C3—C14 | −125.56 (17) | C5—C4—C20—C25 | −111.3 (2) |
N2—C4—C5—C7 | −3.65 (19) | N2—C4—C20—C21 | −51.0 (2) |
C20—C4—C5—C7 | −122.62 (16) | C5—C4—C20—C21 | 66.9 (2) |
N2—C4—C5—C6 | −120.95 (15) | C21—C22—C23—C24 | −0.8 (4) |
C20—C4—C5—C6 | 120.09 (16) | C22—C23—C24—C25 | −1.3 (4) |
C7—C5—C6—N1 | −60.26 (18) | N1—C6—C26—C27 | 171.53 (17) |
C4—C5—C6—N1 | 58.65 (19) | C5—C6—C26—C27 | −67.6 (2) |
C7—C5—C6—C26 | 176.86 (15) | N1—C6—C26—C31 | −8.4 (2) |
C4—C5—C6—C26 | −64.2 (2) | C5—C6—C26—C31 | 112.5 (2) |
C3—C2—C7—O1 | −123.9 (2) | C31—C26—C27—F4 | 178.71 (17) |
C1—C2—C7—O1 | 113.9 (2) | C6—C26—C27—F4 | −1.2 (3) |
C3—C2—C7—C5 | 60.54 (18) | C31—C26—C27—C28 | −0.8 (3) |
C1—C2—C7—C5 | −61.65 (18) | C6—C26—C27—C28 | 179.30 (19) |
C6—C5—C7—O1 | −112.1 (2) | F4—C27—C28—C29 | −178.1 (2) |
C4—C5—C7—O1 | 126.71 (19) | C26—C27—C28—C29 | 1.4 (4) |
C6—C5—C7—C2 | 63.50 (18) | C27—C28—C29—C30 | −1.3 (4) |
C4—C5—C7—C2 | −57.69 (18) | C28—C29—C30—C31 | 0.7 (4) |
N1—C1—C8—C13 | −163.67 (19) | C27—C26—C31—C30 | 0.1 (3) |
C2—C1—C8—C13 | 75.2 (2) | C6—C26—C31—C30 | 180.0 (2) |
N1—C1—C8—C9 | 20.7 (3) | C29—C30—C31—C26 | 0.0 (4) |
C2—C1—C8—C9 | −100.4 (2) | C26—C6—N1—C1 | −175.95 (15) |
C13—C8—C9—C10 | −1.2 (4) | C5—C6—N1—C1 | 61.62 (19) |
C1—C8—C9—C10 | 174.7 (2) | C8—C1—N1—C6 | 178.37 (15) |
C8—C9—C10—C11 | −0.1 (4) | C2—C1—N1—C6 | −60.0 (2) |
C9—C10—C11—C12 | 1.1 (5) | C20—C4—N2—C3 | −174.49 (14) |
C10—C11—C12—C13 | −0.9 (5) | C5—C4—N2—C3 | 64.57 (18) |
C9—C8—C13—F1 | −178.7 (2) | C14—C3—N2—C4 | 176.03 (14) |
C1—C8—C13—F1 | 5.3 (3) | C2—C3—N2—C4 | −61.80 (18) |
C9—C8—C13—C12 | 1.4 (4) | C23—C22—C21—F3A | −175.4 (4) |
C1—C8—C13—C12 | −174.6 (2) | C23—C22—C21—C20 | 2.7 (3) |
C11—C12—C13—F1 | 179.7 (3) | C25—C20—C21—F3A | 175.8 (3) |
C11—C12—C13—C8 | −0.4 (5) | C4—C20—C21—F3A | −2.5 (3) |
N2—C3—C14—C19 | −105.3 (2) | C25—C20—C21—C22 | −2.3 (3) |
C2—C3—C14—C19 | 136.0 (2) | C4—C20—C21—C22 | 179.37 (18) |
N2—C3—C14—C15 | 69.4 (3) | C21—C20—C25—F3 | −179.71 (19) |
C2—C3—C14—C15 | −49.3 (3) | C4—C20—C25—F3 | −1.4 (3) |
C19—C14—C15—C16 | 0.4 (4) | C21—C20—C25—C24 | 0.0 (3) |
C3—C14—C15—C16 | −174.7 (3) | C4—C20—C25—C24 | 178.4 (2) |
C14—C15—C16—C17 | −1.2 (6) | C23—C24—C25—F3 | −178.5 (2) |
C15—C16—C17—C18 | 1.1 (6) | C23—C24—C25—C20 | 1.7 (4) |
C16—C17—C18—C19 | −0.3 (6) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.86 (2) | 2.26 (2) | 3.119 (2) | 175.2 (19) |
N2—H2N···F1ii | 0.92 (2) | 2.46 (2) | 3.332 (2) | 158.4 (17) |
C22—H22···F4iii | 0.93 | 2.52 | 3.345 (3) | 148 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x, y−1/2, −z+3/2; (iii) −x+1, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C31H24F4N2O |
Mr | 516.52 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 298 |
a, b, c (Å) | 12.5610 (11), 15.9118 (13), 13.0221 (8) |
β (°) | 103.207 (3) |
V (Å3) | 2533.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.45 × 0.35 × 0.22 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.955, 0.978 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18116, 5466, 3571 |
Rint | 0.024 |
(sin θ/λ)max (Å−1) | 0.673 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.163, 1.05 |
No. of reflections | 5466 |
No. of parameters | 361 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.48, −0.40 |
Computer programs: APEX2 (Bruker, 2004), SAINT (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1i | 0.86 (2) | 2.26 (2) | 3.119 (2) | 175.2 (19) |
N2—H2N···F1ii | 0.92 (2) | 2.46 (2) | 3.332 (2) | 158.4 (17) |
C22—H22···F4iii | 0.93 | 2.52 | 3.345 (3) | 148 |
Symmetry codes: (i) x, −y+1/2, z−1/2; (ii) −x, y−1/2, −z+3/2; (iii) −x+1, −y, −z+2. |
Acknowledgements
The authors acknowledge the Department of Chemistry, IIT-Madras, for the X-ray data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The Lupin alkaloids contain the 3,7-diazabicyclo[3.3.1]nonan-9-one nucleus, displaying various biological actions (Parthiban et al., 2009, 2010; Asakawa, 1995; Jeyaraman & Avila, 1981). Since the biological actions mainly depend on the stereochemistry of the molecules, we examined the title compound, (I), to explore its stereochemistry in the solid-state.
In (I) (Fig. 1), the piperidone ring N1—C1—C2—C7—C5—C6 adopts a chair conformation, according to Cremer & Pople (1975). The total puckering amplitude QT is 0.623 (2) Å, and the phase angle θ is 2.7 (3)°. The piperidone ring N2—C3—C2—C7—C5—C4 adopts a boat conformation with QT = 0.799 (2) and θ = 90.38 (14)°. The 2-fluorophenyl groups attached to the 'chair' piperidone ring are in equatoril position with the torsion angles C7—C2—C1—C8 = 179.04 (19)° and C26—C6—C5—C7 = 176.67 (19)°. The 2-fluorophenyl groups attached to the 'boat' piperidone ring have the following torsion angles - C7—C2—C3—C14 = 116.8 (2)° and C20—C4—C5—C7 = -122.5 (2)°. The benzene rings of the 2-fluorophenyl group on the chair form piperidone are inclined to each other at an angle of 19.44 (3)°, whereas, the same attached on the boat form are inclined to each other at an angle of 74.55 (5)°. In one of the 2-fluorophenyl groups, the F atom is disordered in two positions in a ratio 0.838 (4):0.162 (4). On the basis of the above analysis, it is concluded that the title compound exists in the chair-boat conformation with an equatorial orientation of the 2-fluorophenyl groups on both sides of the secondary amino group of the piperidone in the chair conformation.
In the crystal, intermolecular N—H···O hydrogen bonds (Table 1) link the molecules into chains in [001], and these chains held together via weak N—H···F and C—H···F interactions (Table 1).