organic compounds
Desoxyhemigossypol 6-methyl ether
aInstitute of Bioorganic Chemistry, Academy of Sciences of Uzbekistan, M. Ulugbek str. 83, Tashkent, 100125 Uzbekistan, and bSouthern Plains Agricultural Research Center, Agricultural Research, Service, USDA, College Station, TX 77845, USA
*Correspondence e-mail: via74@yandex.ru
The title sesquiterpene [systematic name: 6-methoxy-10-methyl-7-(propan-2-yl)-2-oxatricyclo[6.3.1.04,12]dodeca-1(11),4,6,8(12),9-pentaen-5-ol], C16H18O3, was isolated from pathogen-infected stele tissue of Gossypium barbadense. There are two molecules in the and the dihedral angle between their naphthofuran systems is 86.48 (2)°. In the crystal, O—H⋯O hydrogen bonds between the hydroxy groups and etheric O atoms link the molecules into centrosymmetric tetramers. These tetramers are assembled into (010) layers via stacking interactions between the naphthofuran systems [interplanar distance 3.473 (3) Å] and short C—H⋯O contacts.
Related literature
For the isolation and chemical et al. (1975); Stipanovic et al. (1975). For the role of terpenoid as phytoalexins (active defense agents) in response to infection by wilt fungi, see: Mace (1978). For information on the mechanism of action, see: Mace et al. (1995). For the mechanism of O-methylation of desoxyhemigossypol, see: Liu et al. (2002). For general information about antimicrobial compounds produced by cotton, see: Bell (1995).
of related cotton sesquiterpenoid phytoalexins and their intermediates, see: BellExperimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536813002304/gk2530sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813002304/gk2530Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813002304/gk2530Isup3.cml
The title compound was extracted from V. dahliae infected cotton stems and the crude extract, was purified by column and TLC
as described by Bell et al.(1975), and crystalized from CHCl3 and hexane to give crystals (m.p. 429-433 K). These crystals were further purified by semi-preparative reverse phase HPLC (Agilent 1100 HPLC system; Zorbax Eclipse XDB C8 column; Agilent Technologies Inc., USA) with dimensions 9.4 × 250 mm and particle size 5 µm. The column was eluted using a linear gradient of H2O(A)/CH3CN(B) [LC grade, Sigma-Aldrich, DE], both with 0.01% ortho-phosphoric acid pH 2.5 (from 55 to 95% B for 20 minutes) at a flow rate of 4 ml/min. Crystals suitable for X-ray were obtained by slow evaporation of the HPLC eluent.All H atoms were included in calculated positions, with C—H bond distances of 0.98 Å (CH), 0.97 Å (CH2), 0.96 Å (CH3), 0.93 Å (aromatic) and O—H = 0.82 Å and refined in a riding model approximation with Uiso(H) = 1.5Ueq(Cmethyl,O) and Uiso(H) = 1.2Ueq(C) for the remaining H atoms.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C16H18O3 | Z = 4 |
Mr = 258.30 | F(000) = 552 |
Triclinic, P1 | Dx = 1.259 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54184 Å |
a = 10.0275 (5) Å | Cell parameters from 3316 reflections |
b = 11.1058 (6) Å | θ = 3.6–75.7° |
c = 13.2938 (8) Å | µ = 0.69 mm−1 |
α = 107.797 (5)° | T = 293 K |
β = 103.896 (5)° | Block, colourless |
γ = 90.435 (4)° | 0.40 × 0.34 × 0.28 mm |
V = 1363.08 (13) Å3 |
Oxford Diffraction Xcalibur Ruby diffractometer | 5476 independent reflections |
Radiation source: fine-focus sealed tube | 3775 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.027 |
Detector resolution: 10.2576 pixels mm-1 | θmax = 75.9°, θmin = 3.6° |
ω scans | h = −11→12 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −13→12 |
Tmin = 0.925, Tmax = 1.000 | l = −16→16 |
10119 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.158 | w = 1/[σ2(Fo2) + (0.0881P)2 + 0.0965P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
5476 reflections | Δρmax = 0.45 e Å−3 |
354 parameters | Δρmin = −0.22 e Å−3 |
0 restraints | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0038 (6) |
C16H18O3 | γ = 90.435 (4)° |
Mr = 258.30 | V = 1363.08 (13) Å3 |
Triclinic, P1 | Z = 4 |
a = 10.0275 (5) Å | Cu Kα radiation |
b = 11.1058 (6) Å | µ = 0.69 mm−1 |
c = 13.2938 (8) Å | T = 293 K |
α = 107.797 (5)° | 0.40 × 0.34 × 0.28 mm |
β = 103.896 (5)° |
Oxford Diffraction Xcalibur Ruby diffractometer | 5476 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 3775 reflections with I > 2σ(I) |
Tmin = 0.925, Tmax = 1.000 | Rint = 0.027 |
10119 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.158 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.45 e Å−3 |
5476 reflections | Δρmin = −0.22 e Å−3 |
354 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6372 (2) | 0.6300 (2) | 0.60266 (16) | 0.0584 (5) | |
C2 | 0.5457 (3) | 0.7031 (2) | 0.64751 (18) | 0.0701 (7) | |
H2 | 0.5440 | 0.7154 | 0.7196 | 0.084* | |
C3 | 0.4517 (3) | 0.7608 (2) | 0.5804 (2) | 0.0673 (6) | |
C4 | 0.4535 (2) | 0.7425 (2) | 0.47364 (18) | 0.0583 (5) | |
H4 | 0.3927 | 0.7831 | 0.4328 | 0.070* | |
C5 | 0.56004 (19) | 0.62981 (17) | 0.31437 (15) | 0.0461 (4) | |
C6 | 0.65818 (18) | 0.54699 (17) | 0.28745 (14) | 0.0448 (4) | |
C7 | 0.74826 (19) | 0.49542 (18) | 0.36144 (16) | 0.0479 (4) | |
C8 | 0.73732 (19) | 0.52956 (19) | 0.46605 (16) | 0.0492 (4) | |
C9 | 0.63691 (19) | 0.61040 (18) | 0.49337 (15) | 0.0487 (4) | |
C10 | 0.54617 (19) | 0.66320 (18) | 0.42417 (15) | 0.0486 (4) | |
C11 | 0.3488 (3) | 0.8409 (3) | 0.6302 (3) | 0.0941 (9) | |
H11A | 0.3084 | 0.8905 | 0.5848 | 0.141* | |
H11B | 0.3947 | 0.8965 | 0.7016 | 0.141* | |
H11C | 0.2777 | 0.7868 | 0.6359 | 0.141* | |
C12 | 0.8076 (2) | 0.4986 (2) | 0.56747 (18) | 0.0641 (6) | |
H12A | 0.7977 | 0.4079 | 0.5551 | 0.077* | |
H12B | 0.9050 | 0.5272 | 0.5900 | 0.077* | |
C13 | 0.4747 (2) | 0.6820 (2) | 0.22867 (18) | 0.0594 (5) | |
H13 | 0.5046 | 0.6427 | 0.1619 | 0.071* | |
C14 | 0.3207 (2) | 0.6418 (3) | 0.1997 (2) | 0.0762 (7) | |
H14A | 0.3072 | 0.5517 | 0.1843 | 0.114* | |
H14B | 0.2747 | 0.6640 | 0.1365 | 0.114* | |
H14C | 0.2835 | 0.6845 | 0.2600 | 0.114* | |
C15 | 0.5064 (3) | 0.8232 (2) | 0.2559 (3) | 0.0853 (8) | |
H15A | 0.4851 | 0.8668 | 0.3238 | 0.128* | |
H15B | 0.4517 | 0.8515 | 0.1989 | 0.128* | |
H15C | 0.6024 | 0.8411 | 0.2623 | 0.128* | |
C16 | 0.5963 (2) | 0.4046 (2) | 0.10614 (18) | 0.0665 (6) | |
H16A | 0.6233 | 0.3830 | 0.0387 | 0.100* | |
H16B | 0.5017 | 0.4238 | 0.0935 | 0.100* | |
H16C | 0.6065 | 0.3342 | 0.1342 | 0.100* | |
O1 | 0.73758 (17) | 0.56665 (17) | 0.64974 (12) | 0.0721 (5) | |
O2 | 0.84360 (15) | 0.41512 (15) | 0.33045 (13) | 0.0626 (4) | |
H2A | 0.8335 | 0.3970 | 0.2643 | 0.094* | |
O3 | 0.68208 (14) | 0.51333 (13) | 0.18394 (10) | 0.0530 (3) | |
C17 | 1.1325 (2) | 0.81302 (19) | −0.05314 (15) | 0.0498 (4) | |
C18 | 1.2223 (2) | 0.9049 (2) | −0.05337 (17) | 0.0561 (5) | |
H18 | 1.2599 | 0.8966 | −0.1124 | 0.067* | |
C19 | 1.2561 (2) | 1.0143 (2) | 0.04066 (18) | 0.0555 (5) | |
C20 | 1.2035 (2) | 1.02680 (19) | 0.12981 (17) | 0.0530 (5) | |
H20 | 1.2300 | 1.0994 | 0.1903 | 0.064* | |
C21 | 1.04433 (19) | 0.92410 (18) | 0.21481 (16) | 0.0480 (4) | |
C22 | 0.9539 (2) | 0.81841 (18) | 0.19220 (15) | 0.0485 (4) | |
C23 | 0.9187 (2) | 0.71749 (18) | 0.09065 (15) | 0.0490 (4) | |
C24 | 0.9836 (2) | 0.72145 (17) | 0.01286 (15) | 0.0480 (4) | |
C25 | 1.07617 (18) | 0.82592 (17) | 0.03528 (15) | 0.0452 (4) | |
C26 | 1.10907 (18) | 0.93059 (17) | 0.13117 (15) | 0.0456 (4) | |
C27 | 1.3522 (3) | 1.1198 (2) | 0.0407 (2) | 0.0745 (7) | |
H27A | 1.3271 | 1.2002 | 0.0809 | 0.112* | |
H27B | 1.3452 | 1.1177 | −0.0332 | 0.112* | |
H27C | 1.4453 | 1.1088 | 0.0743 | 0.112* | |
C28 | 0.9801 (2) | 0.6354 (2) | −0.09991 (17) | 0.0599 (5) | |
H28A | 1.0057 | 0.5518 | −0.0983 | 0.072* | |
H28B | 0.8891 | 0.6269 | −0.1488 | 0.072* | |
C29 | 1.0730 (2) | 1.0259 (2) | 0.32693 (17) | 0.0585 (5) | |
H29 | 1.0156 | 0.9971 | 0.3667 | 0.070* | |
C30 | 1.2201 (2) | 1.0329 (2) | 0.39328 (19) | 0.0680 (6) | |
H30A | 1.2413 | 0.9502 | 0.3977 | 0.102* | |
H30B | 1.2305 | 1.0910 | 0.4655 | 0.102* | |
H30C | 1.2818 | 1.0619 | 0.3587 | 0.102* | |
C31 | 1.0288 (3) | 1.1533 (2) | 0.3244 (2) | 0.0766 (7) | |
H31A | 1.0832 | 1.1876 | 0.2876 | 0.115* | |
H31B | 1.0417 | 1.2091 | 0.3978 | 0.115* | |
H31C | 0.9332 | 1.1450 | 0.2863 | 0.115* | |
C32 | 0.9621 (3) | 0.7427 (3) | 0.3406 (2) | 0.0781 (7) | |
H32A | 0.9789 | 0.6596 | 0.2989 | 0.117* | |
H32B | 0.9104 | 0.7354 | 0.3908 | 0.117* | |
H32C | 1.0485 | 0.7914 | 0.3804 | 0.117* | |
O4 | 1.08204 (16) | 0.69916 (14) | −0.13428 (11) | 0.0607 (4) | |
O5 | 0.82418 (17) | 0.61951 (15) | 0.07111 (12) | 0.0663 (4) | |
H5 | 0.7976 | 0.6270 | 0.1263 | 0.099* | |
O6 | 0.88542 (15) | 0.80485 (15) | 0.26829 (12) | 0.0612 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0624 (13) | 0.0646 (13) | 0.0392 (10) | −0.0247 (10) | 0.0058 (9) | 0.0100 (9) |
C2 | 0.0794 (16) | 0.0761 (15) | 0.0450 (11) | −0.0301 (12) | 0.0200 (11) | 0.0029 (10) |
C3 | 0.0718 (14) | 0.0577 (13) | 0.0658 (14) | −0.0165 (10) | 0.0293 (12) | 0.0015 (11) |
C4 | 0.0589 (12) | 0.0535 (11) | 0.0606 (12) | −0.0032 (9) | 0.0210 (10) | 0.0111 (10) |
C5 | 0.0459 (10) | 0.0477 (10) | 0.0435 (10) | −0.0038 (8) | 0.0066 (8) | 0.0166 (8) |
C6 | 0.0453 (10) | 0.0487 (10) | 0.0402 (9) | −0.0074 (8) | 0.0095 (7) | 0.0150 (8) |
C7 | 0.0433 (10) | 0.0492 (10) | 0.0505 (11) | −0.0040 (8) | 0.0096 (8) | 0.0168 (8) |
C8 | 0.0435 (9) | 0.0562 (11) | 0.0468 (10) | −0.0083 (8) | 0.0035 (8) | 0.0213 (8) |
C9 | 0.0492 (10) | 0.0532 (11) | 0.0391 (9) | −0.0138 (8) | 0.0065 (8) | 0.0123 (8) |
C10 | 0.0478 (10) | 0.0487 (10) | 0.0468 (10) | −0.0070 (8) | 0.0111 (8) | 0.0125 (8) |
C11 | 0.112 (2) | 0.0758 (18) | 0.097 (2) | −0.0006 (15) | 0.0625 (18) | 0.0033 (15) |
C12 | 0.0561 (12) | 0.0803 (15) | 0.0551 (12) | −0.0094 (11) | −0.0004 (10) | 0.0319 (11) |
C13 | 0.0608 (12) | 0.0671 (13) | 0.0563 (12) | 0.0090 (10) | 0.0128 (10) | 0.0295 (10) |
C14 | 0.0596 (13) | 0.0940 (18) | 0.0718 (15) | 0.0061 (12) | −0.0010 (11) | 0.0353 (14) |
C15 | 0.0937 (19) | 0.0731 (17) | 0.108 (2) | 0.0165 (14) | 0.0338 (17) | 0.0493 (16) |
C16 | 0.0740 (14) | 0.0662 (14) | 0.0494 (12) | −0.0038 (11) | 0.0119 (10) | 0.0072 (10) |
O1 | 0.0736 (10) | 0.0946 (12) | 0.0453 (8) | −0.0151 (9) | 0.0010 (7) | 0.0295 (8) |
O2 | 0.0562 (8) | 0.0723 (10) | 0.0627 (9) | 0.0146 (7) | 0.0165 (7) | 0.0249 (8) |
O3 | 0.0590 (8) | 0.0579 (8) | 0.0434 (7) | −0.0053 (6) | 0.0169 (6) | 0.0151 (6) |
C17 | 0.0510 (10) | 0.0525 (11) | 0.0445 (10) | 0.0036 (8) | 0.0108 (8) | 0.0145 (8) |
C18 | 0.0536 (11) | 0.0669 (13) | 0.0525 (11) | 0.0010 (9) | 0.0184 (9) | 0.0220 (10) |
C19 | 0.0473 (10) | 0.0590 (12) | 0.0614 (12) | −0.0027 (9) | 0.0104 (9) | 0.0234 (10) |
C20 | 0.0490 (10) | 0.0488 (10) | 0.0564 (12) | −0.0015 (8) | 0.0088 (9) | 0.0134 (9) |
C21 | 0.0468 (10) | 0.0492 (10) | 0.0462 (10) | 0.0066 (8) | 0.0114 (8) | 0.0130 (8) |
C22 | 0.0501 (10) | 0.0530 (11) | 0.0443 (10) | 0.0060 (8) | 0.0139 (8) | 0.0166 (8) |
C23 | 0.0517 (10) | 0.0465 (10) | 0.0475 (10) | −0.0015 (8) | 0.0087 (8) | 0.0162 (8) |
C24 | 0.0526 (10) | 0.0457 (10) | 0.0433 (10) | 0.0005 (8) | 0.0076 (8) | 0.0140 (8) |
C25 | 0.0427 (9) | 0.0488 (10) | 0.0457 (10) | 0.0035 (7) | 0.0091 (8) | 0.0189 (8) |
C26 | 0.0451 (9) | 0.0444 (9) | 0.0467 (10) | 0.0045 (7) | 0.0094 (8) | 0.0151 (8) |
C27 | 0.0697 (15) | 0.0747 (16) | 0.0810 (16) | −0.0162 (12) | 0.0205 (13) | 0.0268 (13) |
C28 | 0.0707 (13) | 0.0555 (12) | 0.0496 (11) | −0.0083 (10) | 0.0152 (10) | 0.0116 (9) |
C29 | 0.0632 (13) | 0.0551 (12) | 0.0500 (11) | 0.0036 (9) | 0.0145 (10) | 0.0065 (9) |
C30 | 0.0680 (14) | 0.0671 (14) | 0.0559 (13) | 0.0026 (11) | 0.0024 (11) | 0.0113 (10) |
C31 | 0.0866 (17) | 0.0659 (15) | 0.0707 (15) | 0.0164 (12) | 0.0193 (13) | 0.0126 (12) |
C32 | 0.0918 (18) | 0.0867 (17) | 0.0575 (13) | −0.0204 (14) | 0.0101 (12) | 0.0328 (13) |
O4 | 0.0726 (9) | 0.0588 (8) | 0.0475 (8) | −0.0071 (7) | 0.0220 (7) | 0.0076 (6) |
O5 | 0.0794 (10) | 0.0641 (9) | 0.0538 (8) | −0.0213 (8) | 0.0213 (8) | 0.0138 (7) |
O6 | 0.0636 (9) | 0.0718 (9) | 0.0521 (8) | −0.0019 (7) | 0.0222 (7) | 0.0197 (7) |
C1—C2 | 1.354 (3) | C17—C18 | 1.357 (3) |
C1—O1 | 1.370 (3) | C17—O4 | 1.383 (2) |
C1—C9 | 1.401 (3) | C17—C25 | 1.392 (3) |
C2—C3 | 1.432 (4) | C18—C19 | 1.420 (3) |
C2—H2 | 0.9300 | C18—H18 | 0.9300 |
C3—C4 | 1.376 (3) | C19—C20 | 1.380 (3) |
C3—C11 | 1.510 (3) | C19—C27 | 1.511 (3) |
C4—C10 | 1.422 (3) | C20—C26 | 1.429 (3) |
C4—H4 | 0.9300 | C20—H20 | 0.9300 |
C5—C6 | 1.387 (3) | C21—C22 | 1.388 (3) |
C5—C10 | 1.433 (3) | C21—C26 | 1.435 (3) |
C5—C13 | 1.520 (3) | C21—C29 | 1.530 (3) |
C6—O3 | 1.391 (2) | C22—O6 | 1.394 (2) |
C6—C7 | 1.427 (3) | C22—C23 | 1.429 (3) |
C7—C8 | 1.357 (3) | C23—O5 | 1.358 (2) |
C7—O2 | 1.363 (2) | C23—C24 | 1.359 (3) |
C8—C9 | 1.393 (3) | C24—C25 | 1.391 (3) |
C8—C12 | 1.504 (3) | C24—C28 | 1.504 (3) |
C9—C10 | 1.398 (3) | C25—C26 | 1.404 (3) |
C11—H11A | 0.9600 | C27—H27A | 0.9600 |
C11—H11B | 0.9600 | C27—H27B | 0.9600 |
C11—H11C | 0.9600 | C27—H27C | 0.9600 |
C12—O1 | 1.460 (3) | C28—O4 | 1.472 (2) |
C12—H12A | 0.9700 | C28—H28A | 0.9700 |
C12—H12B | 0.9700 | C28—H28B | 0.9700 |
C13—C15 | 1.510 (3) | C29—C31 | 1.494 (3) |
C13—C14 | 1.526 (3) | C29—C30 | 1.514 (3) |
C13—H13 | 0.9800 | C29—H29 | 0.9800 |
C14—H14A | 0.9600 | C30—H30A | 0.9600 |
C14—H14B | 0.9600 | C30—H30B | 0.9600 |
C14—H14C | 0.9600 | C30—H30C | 0.9600 |
C15—H15A | 0.9600 | C31—H31A | 0.9600 |
C15—H15B | 0.9600 | C31—H31B | 0.9600 |
C15—H15C | 0.9600 | C31—H31C | 0.9600 |
C16—O3 | 1.436 (2) | C32—O6 | 1.432 (3) |
C16—H16A | 0.9600 | C32—H32A | 0.9600 |
C16—H16B | 0.9600 | C32—H32B | 0.9600 |
C16—H16C | 0.9600 | C32—H32C | 0.9600 |
O2—H2A | 0.8200 | O5—H5 | 0.8200 |
C2—C1—O1 | 128.9 (2) | C18—C17—O4 | 128.27 (18) |
C2—C1—C9 | 120.4 (2) | C18—C17—C25 | 121.37 (19) |
O1—C1—C9 | 110.6 (2) | O4—C17—C25 | 110.36 (17) |
C1—C2—C3 | 117.9 (2) | C17—C18—C19 | 116.92 (19) |
C1—C2—H2 | 121.1 | C17—C18—H18 | 121.5 |
C3—C2—H2 | 121.1 | C19—C18—H18 | 121.5 |
C4—C3—C2 | 121.3 (2) | C20—C19—C18 | 122.20 (19) |
C4—C3—C11 | 120.9 (3) | C20—C19—C27 | 119.9 (2) |
C2—C3—C11 | 117.8 (2) | C18—C19—C27 | 117.9 (2) |
C3—C4—C10 | 121.6 (2) | C19—C20—C26 | 121.41 (19) |
C3—C4—H4 | 119.2 | C19—C20—H20 | 119.3 |
C10—C4—H4 | 119.2 | C26—C20—H20 | 119.3 |
C6—C5—C10 | 117.24 (17) | C22—C21—C26 | 117.52 (17) |
C6—C5—C13 | 119.53 (17) | C22—C21—C29 | 119.33 (18) |
C10—C5—C13 | 123.23 (18) | C26—C21—C29 | 123.13 (18) |
C5—C6—O3 | 121.02 (16) | C21—C22—O6 | 121.39 (17) |
C5—C6—C7 | 124.92 (17) | C21—C22—C23 | 124.49 (18) |
O3—C6—C7 | 113.94 (16) | O6—C22—C23 | 114.09 (17) |
C8—C7—O2 | 119.94 (18) | O5—C23—C24 | 120.13 (17) |
C8—C7—C6 | 117.77 (18) | O5—C23—C22 | 121.93 (18) |
O2—C7—C6 | 122.29 (17) | C24—C23—C22 | 117.94 (17) |
C7—C8—C9 | 117.79 (18) | C23—C24—C25 | 118.00 (17) |
C7—C8—C12 | 135.5 (2) | C23—C24—C28 | 134.59 (18) |
C9—C8—C12 | 106.72 (18) | C25—C24—C28 | 107.41 (17) |
C8—C9—C10 | 126.68 (18) | C24—C25—C17 | 109.77 (17) |
C8—C9—C1 | 109.45 (19) | C24—C25—C26 | 126.36 (18) |
C10—C9—C1 | 123.9 (2) | C17—C25—C26 | 123.87 (18) |
C9—C10—C4 | 114.85 (18) | C25—C26—C20 | 114.18 (17) |
C9—C10—C5 | 115.56 (18) | C25—C26—C21 | 115.56 (17) |
C4—C10—C5 | 129.58 (19) | C20—C26—C21 | 130.26 (18) |
C3—C11—H11A | 109.5 | C19—C27—H27A | 109.5 |
C3—C11—H11B | 109.5 | C19—C27—H27B | 109.5 |
H11A—C11—H11B | 109.5 | H27A—C27—H27B | 109.5 |
C3—C11—H11C | 109.5 | C19—C27—H27C | 109.5 |
H11A—C11—H11C | 109.5 | H27A—C27—H27C | 109.5 |
H11B—C11—H11C | 109.5 | H27B—C27—H27C | 109.5 |
O1—C12—C8 | 104.78 (18) | O4—C28—C24 | 103.99 (15) |
O1—C12—H12A | 110.8 | O4—C28—H28A | 111.0 |
C8—C12—H12A | 110.8 | C24—C28—H28A | 111.0 |
O1—C12—H12B | 110.8 | O4—C28—H28B | 111.0 |
C8—C12—H12B | 110.8 | C24—C28—H28B | 111.0 |
H12A—C12—H12B | 108.9 | H28A—C28—H28B | 109.0 |
C15—C13—C5 | 112.45 (19) | C31—C29—C30 | 112.4 (2) |
C15—C13—C14 | 113.3 (2) | C31—C29—C21 | 114.58 (19) |
C5—C13—C14 | 113.28 (18) | C30—C29—C21 | 112.46 (17) |
C15—C13—H13 | 105.6 | C31—C29—H29 | 105.5 |
C5—C13—H13 | 105.6 | C30—C29—H29 | 105.5 |
C14—C13—H13 | 105.6 | C21—C29—H29 | 105.5 |
C13—C14—H14A | 109.5 | C29—C30—H30A | 109.5 |
C13—C14—H14B | 109.5 | C29—C30—H30B | 109.5 |
H14A—C14—H14B | 109.5 | H30A—C30—H30B | 109.5 |
C13—C14—H14C | 109.5 | C29—C30—H30C | 109.5 |
H14A—C14—H14C | 109.5 | H30A—C30—H30C | 109.5 |
H14B—C14—H14C | 109.5 | H30B—C30—H30C | 109.5 |
C13—C15—H15A | 109.5 | C29—C31—H31A | 109.5 |
C13—C15—H15B | 109.5 | C29—C31—H31B | 109.5 |
H15A—C15—H15B | 109.5 | H31A—C31—H31B | 109.5 |
C13—C15—H15C | 109.5 | C29—C31—H31C | 109.5 |
H15A—C15—H15C | 109.5 | H31A—C31—H31C | 109.5 |
H15B—C15—H15C | 109.5 | H31B—C31—H31C | 109.5 |
O3—C16—H16A | 109.5 | O6—C32—H32A | 109.5 |
O3—C16—H16B | 109.5 | O6—C32—H32B | 109.5 |
H16A—C16—H16B | 109.5 | H32A—C32—H32B | 109.5 |
O3—C16—H16C | 109.5 | O6—C32—H32C | 109.5 |
H16A—C16—H16C | 109.5 | H32A—C32—H32C | 109.5 |
H16B—C16—H16C | 109.5 | H32B—C32—H32C | 109.5 |
C1—O1—C12 | 108.40 (16) | C17—O4—C28 | 108.37 (15) |
C7—O2—H2A | 109.5 | C23—O5—H5 | 109.5 |
C6—O3—C16 | 114.15 (14) | C22—O6—C32 | 112.83 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O3 | 0.82 | 2.28 | 2.723 (2) | 114 |
O2—H2A···O4i | 0.82 | 2.11 | 2.809 (2) | 144 |
O5—H5···O3 | 0.82 | 2.13 | 2.7843 (19) | 137 |
O5—H5···O6 | 0.82 | 2.27 | 2.719 (2) | 115 |
C12—H12B···O2ii | 0.97 | 2.48 | 3.445 (3) | 171 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C16H18O3 |
Mr | 258.30 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 10.0275 (5), 11.1058 (6), 13.2938 (8) |
α, β, γ (°) | 107.797 (5), 103.896 (5), 90.435 (4) |
V (Å3) | 1363.08 (13) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.69 |
Crystal size (mm) | 0.40 × 0.34 × 0.28 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Ruby diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.925, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10119, 5476, 3775 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.629 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.158, 1.04 |
No. of reflections | 5476 |
No. of parameters | 354 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.22 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP in SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2A···O3 | 0.82 | 2.28 | 2.723 (2) | 114 |
O2—H2A···O4i | 0.82 | 2.11 | 2.809 (2) | 144 |
O5—H5···O3 | 0.82 | 2.13 | 2.7843 (19) | 137 |
O5—H5···O6 | 0.82 | 2.27 | 2.719 (2) | 115 |
C12—H12B···O2ii | 0.97 | 2.48 | 3.445 (3) | 171 |
Symmetry codes: (i) −x+2, −y+1, −z; (ii) −x+2, −y+1, −z+1. |
Acknowledgements
This work was supported by the CRDF project UZB2–31001-TA02.
References
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The title sesquiterpene compound with systematic name 3-hydroxy-5-(1-methylethyl)-4-methoxy-7-methyl-2H-naphtho[1,8-bc]furan, was isolated from pathogen-infected stele tissue of Gossypium barbadense (fine-fibre Egyptian cotton) where it plays a role as a phytoalexin (active defense agent in response to infection by wilt fungi). The plant is widely cultivated in cotton-producing countries such as USA, Mexico, China, Uzbekistan and Egypt. Here we report its crystal structure.
The numbering scheme of atoms is shown in Fig. 1. The 12 non-hydrogen atoms of the naphthofuran system in each of the two symmetry independent molecules are virtually coplanar with r.m.s. values of 0.020 and 0.028 Å. Hydrogen bonds between hydroxy group and etheric oxygen atom link the molecules into centrosymmetric tertramers (Table 1, Fig. 2). These tertramers are assembled into (010) layers via stacking interactions between the naphthofuran systems [interplanar distance 3.473 (3) Å] and short C—H···O interactions.