organic compounds
rac-N-Benzylisatincreatinine (unknown solvate)
aDepartment of Pharmaceutical Sciences, College of Pharmacy, University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA
*Correspondence e-mail: pacrooks@uams.edu
The title compound, C19H18N4O3 [systematic name: (RS)-1-benzyl-3-hydroxy-3-(2-imino-3-methyl-5-oxoimidazolidin-4-yl)-2,3-dihydro-1H-indol-2-one], was prepared as a racemate (RR and SS) by the aldol condensation of N-benzylisatin with creatinine in the presence of sodium acetate in acetic acid. The r.m.s. deviation of the isatin ring system is 0.033 Å. The benzyl group is disordered over two orientations, with refined occupancies of 0.847 (7) and 0.153 (7). The dihedral angles between the isatin ring system and the benzene ring (major disorder component) and the imidazole ring are 82.82 (7) and 51.31 (3)°, respectively, In the crystal, molecules are linked into (001) sheets by N—H⋯O and O—H⋯N hydrogen bonds, which incorporate R22(9) ring motifs. The crystal was grown from mixed solvents (ethanol, methanol and possibly also ethyl acetate). These solvents are disordered in the crystal and the resulting electron density was found to be uninterpretable. The solvent contribution to the scattering was removed with the SQUEEZE routine in PLATON [Spek (2009). Acta Cryst. D65, 148–155]. The formula mass and density do not take account of the solvent.
Related literature
For details on the development of isatin derivatives as anticancer agents, see: Penthala et al. (2010a,b). For similar structures, see: Tang et al. (2009); Penthala et al. (2009a,b).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP in SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELX97.
Supporting information
10.1107/S1600536813000378/hb7013sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813000378/hb7013Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813000378/hb7013Isup3.cml
The title compound was prepared according to a previously reported procedure (Penthala et al., 2009a,b). Recrystallization from ethanol afforded the title compound as pale yellow plates. Spectroscopic data for rac-N-benzylisatincreatinine: 1H NMR (DMSO-d6): δ 3.17 (s, 3H, CH3), 4.21 (s, 1H, CH), 4.74–4.91 (ABq, J= 16.2 Hz), 6.57 (s, 1H, OH), 6.64–6.67 (d, J= 8.1 HZ, 1H, –C4H), 6.91–6.96 (t, J=7.5 Hz, 1H, –C5H), 7.11–7.34 (m, 5H, –C6H, –C7H and Ar—H), 7.45–7.47 (d, J=7.2 Hz, 2H, Ar—H),7.56 (bs, 2H, NH2); 13C NMR (DMSO-d6): δ 32.67, 42.89, 69.52, 76.02, 108.99, 121.89, 123.72, 126.99, 127.14 (2 C) 127.43, 128.22 (2 C), 129.34, 136.01, 143.15, 171.96 (C=N), 174.42 (isatin C=O), 182.26 (creatinine C=O).
H atoms were found in difference Fourier maps and subsequently placed in idealized positions with constrained distances of 0.98 Å (RCH3), 0.99 Å (R2CH2), 1.00 Å (R3CH), 0.95 Å (CArH), 0.84 Å (O—H), 0.88 Å (N—H), and with Uiso(H) values set to either 1.2Ueq or 1.5Ueq (RCH3, OH) of the attached atom.
The benzyl ring is disordered over two positions with refined occupancy factors of 0.847 (7) and 0.153 (7). To ensure stable
of the minor component, a number of constraints and restraints were applied. The constraint (an SHELXL97 EADP instruction on atoms C16 and C16') forces the displacement parameters for these nearly superimposed atoms to be equal. The restraints (SHELXL97 commands SAME, FLAT, DELU and SIMU) ensure chemically and physically reasonable parameters for the disordered atoms.The solvent used to grow the crystal was a mixture of ethanol and methanol, but it likely also contained an unknown amount of ethyl acetate. The resulting electron density was largely uninterpretable. It was decided to remove it with the SQUEEZE routine in PLATON (Spek, 2009).
Data collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XP (Sheldrick, 2008); software used to prepare material for publication: SHELX97 (Sheldrick, 2008).Fig. 1. A view of (I). Displacement ellipsoids are drawn at the 50% probability level. | |
Fig. 2. Hydrogen bonding in the crystal structure of (I). Dashed lines represent hydrogen bonds. |
C19H18N4O3 | F(000) = 1472 |
Mr = 350.37 | Dx = 1.190 Mg m−3 |
Orthorhombic, Pbca | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 9086 reflections |
a = 13.4466 (2) Å | θ = 4.6–68.9° |
b = 10.6921 (2) Å | µ = 0.68 mm−1 |
c = 27.2057 (5) Å | T = 90 K |
V = 3911.43 (12) Å3 | Plate, pale yellow |
Z = 8 | 0.12 × 0.10 × 0.04 mm |
Bruker X8 Proteum CCD diffractometer | 3602 independent reflections |
Radiation source: fine-focus rotating anode | 3344 reflections with I > 2σ(I) |
Graded multilayer optics monochromator | Rint = 0.043 |
Detector resolution: 5.6 pixels mm-1 | θmax = 68.7°, θmin = 4.6° |
ϕ and ω scans | h = −16→16 |
Absorption correction: multi-scan (SADABS; Bruker, 2006) | k = −12→12 |
Tmin = 0.911, Tmax = 0.973 | l = −32→31 |
55165 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.038 | H-atom parameters constrained |
wR(F2) = 0.104 | w = 1/[σ2(Fo2) + (0.0555P)2 + 1.5834P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.001 |
3602 reflections | Δρmax = 0.28 e Å−3 |
287 parameters | Δρmin = −0.30 e Å−3 |
222 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.00043 (9) |
C19H18N4O3 | V = 3911.43 (12) Å3 |
Mr = 350.37 | Z = 8 |
Orthorhombic, Pbca | Cu Kα radiation |
a = 13.4466 (2) Å | µ = 0.68 mm−1 |
b = 10.6921 (2) Å | T = 90 K |
c = 27.2057 (5) Å | 0.12 × 0.10 × 0.04 mm |
Bruker X8 Proteum CCD diffractometer | 3602 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2006) | 3344 reflections with I > 2σ(I) |
Tmin = 0.911, Tmax = 0.973 | Rint = 0.043 |
55165 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 222 restraints |
wR(F2) = 0.104 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.28 e Å−3 |
3602 reflections | Δρmin = −0.30 e Å−3 |
287 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.34991 (6) | 0.33786 (8) | 0.64888 (3) | 0.0243 (2) | |
C1 | 0.41054 (9) | 0.42315 (12) | 0.65145 (4) | 0.0212 (3) | |
N2 | 0.40105 (8) | 0.53751 (10) | 0.63017 (4) | 0.0240 (2) | |
C3 | 0.48704 (9) | 0.61071 (13) | 0.63800 (4) | 0.0252 (3) | |
C4 | 0.50442 (11) | 0.73157 (14) | 0.62246 (5) | 0.0339 (3) | |
H4 | 0.4551 | 0.7781 | 0.6054 | 0.041* | |
C5 | 0.59772 (12) | 0.78247 (14) | 0.63292 (6) | 0.0396 (4) | |
H5 | 0.6120 | 0.8657 | 0.6229 | 0.047* | |
C6 | 0.66974 (11) | 0.71461 (14) | 0.65753 (5) | 0.0359 (3) | |
H6 | 0.7331 | 0.7508 | 0.6635 | 0.043* | |
C7 | 0.64986 (10) | 0.59308 (13) | 0.67374 (5) | 0.0283 (3) | |
H7 | 0.6990 | 0.5464 | 0.6909 | 0.034* | |
C8 | 0.55730 (9) | 0.54224 (12) | 0.66432 (4) | 0.0231 (3) | |
O9 | 0.56962 (6) | 0.31592 (8) | 0.66485 (3) | 0.0238 (2) | |
H9 | 0.5498 | 0.2516 | 0.6796 | 0.036* | |
C9 | 0.51144 (9) | 0.41884 (11) | 0.67907 (4) | 0.0202 (3) | |
C10 | 0.49128 (8) | 0.41474 (11) | 0.73572 (4) | 0.0180 (3) | |
H10 | 0.4592 | 0.3339 | 0.7453 | 0.022* | |
O11 | 0.34262 (6) | 0.54407 (8) | 0.74190 (3) | 0.0234 (2) | |
C11 | 0.42968 (9) | 0.52621 (11) | 0.75378 (4) | 0.0188 (3) | |
N12 | 0.48658 (7) | 0.60115 (9) | 0.78275 (4) | 0.0200 (2) | |
N13 | 0.65376 (7) | 0.59593 (10) | 0.80798 (4) | 0.0228 (2) | |
H13A | 0.7113 | 0.5567 | 0.8086 | 0.027* | |
H13B | 0.6474 | 0.6691 | 0.8224 | 0.027* | |
C13 | 0.57697 (9) | 0.54496 (11) | 0.78532 (4) | 0.0188 (3) | |
N14 | 0.58264 (7) | 0.43382 (9) | 0.76280 (3) | 0.0185 (2) | |
C14 | 0.66413 (9) | 0.34513 (12) | 0.76781 (5) | 0.0240 (3) | |
H14A | 0.7141 | 0.3616 | 0.7424 | 0.036* | |
H14B | 0.6386 | 0.2598 | 0.7640 | 0.036* | |
H14C | 0.6945 | 0.3543 | 0.8004 | 0.036* | |
C15 | 0.31240 (10) | 0.58041 (13) | 0.60432 (5) | 0.0262 (3) | |
H15A | 0.2929 | 0.6630 | 0.6176 | 0.031* | |
H15B | 0.2574 | 0.5214 | 0.6111 | 0.031* | |
C16 | 0.3251 (2) | 0.5920 (3) | 0.54852 (14) | 0.0295 (5) | 0.847 (7) |
C17 | 0.2898 (2) | 0.6974 (3) | 0.52528 (8) | 0.0565 (8) | 0.847 (7) |
H17 | 0.2631 | 0.7645 | 0.5440 | 0.068* | 0.847 (7) |
C18 | 0.2932 (3) | 0.7056 (3) | 0.47406 (8) | 0.0724 (11) | 0.847 (7) |
H18 | 0.2687 | 0.7783 | 0.4580 | 0.087* | 0.847 (7) |
C19 | 0.3315 (2) | 0.6099 (3) | 0.44696 (10) | 0.0573 (8) | 0.847 (7) |
H19 | 0.3337 | 0.6159 | 0.4121 | 0.069* | 0.847 (7) |
C20 | 0.3668 (3) | 0.5051 (4) | 0.46988 (15) | 0.0397 (7) | 0.847 (7) |
H20 | 0.3936 | 0.4384 | 0.4509 | 0.048* | 0.847 (7) |
C21 | 0.3636 (3) | 0.4957 (4) | 0.52102 (15) | 0.0313 (7) | 0.847 (7) |
H21 | 0.3881 | 0.4227 | 0.5368 | 0.038* | 0.847 (7) |
C16' | 0.3153 (14) | 0.5782 (19) | 0.5524 (9) | 0.0295 (5) | 0.153 (7) |
C17' | 0.2496 (12) | 0.6474 (16) | 0.5261 (4) | 0.054 (2) | 0.153 (7) |
H17' | 0.2047 | 0.7002 | 0.5433 | 0.065* | 0.153 (7) |
C18' | 0.2450 (13) | 0.6442 (17) | 0.4741 (4) | 0.060 (2) | 0.153 (7) |
H18' | 0.1982 | 0.6935 | 0.4565 | 0.072* | 0.153 (7) |
C19' | 0.3107 (13) | 0.5673 (16) | 0.4500 (6) | 0.054 (2) | 0.153 (7) |
H19' | 0.3098 | 0.5632 | 0.4151 | 0.065* | 0.153 (7) |
C20' | 0.3770 (18) | 0.497 (2) | 0.4756 (9) | 0.042 (2) | 0.153 (7) |
H20' | 0.4220 | 0.4438 | 0.4587 | 0.050* | 0.153 (7) |
C21' | 0.3787 (17) | 0.503 (2) | 0.5264 (9) | 0.033 (2) | 0.153 (7) |
H21' | 0.4255 | 0.4533 | 0.5439 | 0.040* | 0.153 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0232 (4) | 0.0268 (5) | 0.0229 (4) | −0.0029 (4) | −0.0027 (3) | 0.0017 (4) |
C1 | 0.0227 (6) | 0.0254 (6) | 0.0154 (5) | −0.0006 (5) | 0.0014 (4) | 0.0013 (5) |
N2 | 0.0241 (5) | 0.0277 (6) | 0.0202 (5) | −0.0014 (4) | −0.0022 (4) | 0.0059 (4) |
C3 | 0.0273 (6) | 0.0290 (7) | 0.0193 (6) | −0.0040 (5) | 0.0020 (5) | 0.0038 (5) |
C4 | 0.0402 (8) | 0.0320 (7) | 0.0295 (7) | −0.0029 (6) | −0.0008 (6) | 0.0104 (6) |
C5 | 0.0493 (9) | 0.0330 (8) | 0.0364 (8) | −0.0140 (7) | 0.0008 (7) | 0.0116 (6) |
C6 | 0.0373 (8) | 0.0409 (8) | 0.0295 (7) | −0.0162 (6) | 0.0000 (6) | 0.0063 (6) |
C7 | 0.0280 (7) | 0.0359 (7) | 0.0210 (6) | −0.0067 (6) | 0.0015 (5) | 0.0040 (5) |
C8 | 0.0257 (6) | 0.0276 (6) | 0.0161 (6) | −0.0036 (5) | 0.0023 (5) | 0.0027 (5) |
O9 | 0.0236 (4) | 0.0257 (5) | 0.0221 (4) | 0.0010 (3) | 0.0040 (3) | −0.0004 (3) |
C9 | 0.0199 (6) | 0.0230 (6) | 0.0178 (6) | −0.0008 (5) | 0.0006 (4) | 0.0010 (4) |
C10 | 0.0172 (6) | 0.0189 (6) | 0.0178 (6) | −0.0008 (4) | −0.0004 (4) | 0.0016 (4) |
O11 | 0.0178 (4) | 0.0229 (4) | 0.0295 (5) | 0.0006 (3) | −0.0024 (3) | 0.0009 (3) |
C11 | 0.0181 (6) | 0.0203 (6) | 0.0179 (5) | −0.0011 (4) | 0.0011 (4) | 0.0040 (4) |
N12 | 0.0182 (5) | 0.0209 (5) | 0.0208 (5) | 0.0006 (4) | −0.0003 (4) | −0.0001 (4) |
N13 | 0.0191 (5) | 0.0234 (5) | 0.0258 (5) | 0.0024 (4) | −0.0041 (4) | −0.0046 (4) |
C13 | 0.0196 (6) | 0.0223 (6) | 0.0146 (5) | −0.0002 (5) | 0.0007 (4) | 0.0031 (4) |
N14 | 0.0181 (5) | 0.0187 (5) | 0.0186 (5) | 0.0014 (4) | −0.0015 (4) | 0.0001 (4) |
C14 | 0.0198 (6) | 0.0215 (6) | 0.0308 (6) | 0.0028 (5) | −0.0044 (5) | −0.0001 (5) |
C15 | 0.0248 (6) | 0.0340 (7) | 0.0199 (6) | 0.0057 (5) | 0.0006 (5) | 0.0044 (5) |
C16 | 0.0267 (10) | 0.0427 (11) | 0.0191 (9) | 0.0057 (7) | 0.0021 (7) | 0.0076 (7) |
C17 | 0.0808 (19) | 0.0593 (16) | 0.0294 (9) | 0.0366 (14) | 0.0088 (11) | 0.0144 (10) |
C18 | 0.106 (2) | 0.078 (2) | 0.0330 (10) | 0.0440 (19) | 0.0066 (13) | 0.0227 (12) |
C19 | 0.0693 (17) | 0.083 (2) | 0.0196 (9) | 0.0199 (15) | 0.0079 (10) | 0.0136 (12) |
C20 | 0.0358 (13) | 0.0602 (14) | 0.0230 (14) | 0.0012 (11) | 0.0021 (10) | −0.0050 (11) |
C21 | 0.0316 (15) | 0.0380 (11) | 0.0243 (14) | −0.0012 (10) | −0.0027 (9) | −0.0008 (9) |
C16' | 0.0267 (10) | 0.0427 (11) | 0.0191 (9) | 0.0057 (7) | 0.0021 (7) | 0.0076 (7) |
C17' | 0.068 (4) | 0.064 (4) | 0.030 (3) | 0.024 (4) | 0.005 (4) | 0.012 (4) |
C18' | 0.081 (5) | 0.072 (5) | 0.026 (3) | 0.031 (4) | −0.002 (4) | 0.019 (4) |
C19' | 0.069 (4) | 0.075 (5) | 0.019 (4) | 0.014 (4) | −0.001 (4) | 0.008 (4) |
C20' | 0.044 (4) | 0.059 (4) | 0.023 (4) | 0.005 (4) | 0.000 (4) | 0.001 (4) |
C21' | 0.029 (4) | 0.051 (4) | 0.020 (4) | −0.003 (4) | −0.001 (4) | 0.004 (4) |
O1—C1 | 1.2253 (15) | C14—H14A | 0.9800 |
C1—N2 | 1.3588 (16) | C14—H14B | 0.9800 |
C1—C9 | 1.5516 (16) | C14—H14C | 0.9800 |
N2—C3 | 1.4124 (17) | C15—C16' | 1.41 (2) |
N2—C15 | 1.4582 (16) | C15—C16 | 1.533 (4) |
C3—C4 | 1.3796 (19) | C15—H15A | 0.9900 |
C3—C8 | 1.3933 (18) | C15—H15B | 0.9900 |
C4—C5 | 1.397 (2) | C16—C21 | 1.374 (3) |
C4—H4 | 0.9500 | C16—C17 | 1.377 (3) |
C5—C6 | 1.383 (2) | C17—C18 | 1.397 (3) |
C5—H5 | 0.9500 | C17—H17 | 0.9500 |
C6—C7 | 1.398 (2) | C18—C19 | 1.362 (4) |
C6—H6 | 0.9500 | C18—H18 | 0.9500 |
C7—C8 | 1.3821 (18) | C19—C20 | 1.368 (4) |
C7—H7 | 0.9500 | C19—H19 | 0.9500 |
C8—C9 | 1.5107 (17) | C20—C21 | 1.396 (3) |
O9—C9 | 1.4046 (15) | C20—H20 | 0.9500 |
O9—H9 | 0.8400 | C21—H21 | 0.9500 |
C9—C10 | 1.5654 (16) | C16'—C17' | 1.357 (16) |
C10—N14 | 1.4468 (14) | C16'—C21' | 1.368 (17) |
C10—C11 | 1.5322 (16) | C17'—C18' | 1.418 (13) |
C10—H10 | 1.0000 | C17'—H17' | 0.9500 |
O11—C11 | 1.2295 (14) | C18'—C19' | 1.373 (15) |
C11—N12 | 1.3597 (16) | C18'—H18' | 0.9500 |
N12—C13 | 1.3576 (15) | C19'—C20' | 1.359 (16) |
N13—C13 | 1.3204 (15) | C19'—H19' | 0.9500 |
N13—H13A | 0.8800 | C20'—C21' | 1.385 (17) |
N13—H13B | 0.8800 | C20'—H20' | 0.9500 |
C13—N14 | 1.3392 (16) | C21'—H21' | 0.9500 |
N14—C14 | 1.4555 (15) | ||
O1—C1—N2 | 125.66 (11) | N14—C14—H14B | 109.5 |
O1—C1—C9 | 125.97 (11) | H14A—C14—H14B | 109.5 |
N2—C1—C9 | 108.37 (10) | N14—C14—H14C | 109.5 |
C1—N2—C3 | 110.95 (10) | H14A—C14—H14C | 109.5 |
C1—N2—C15 | 124.43 (11) | H14B—C14—H14C | 109.5 |
C3—N2—C15 | 124.59 (11) | C16'—C15—N2 | 117.0 (8) |
C4—C3—C8 | 122.34 (12) | N2—C15—C16 | 114.35 (15) |
C4—C3—N2 | 127.69 (12) | C16'—C15—H15A | 112.9 |
C8—C3—N2 | 109.96 (11) | N2—C15—H15A | 108.7 |
C3—C4—C5 | 117.03 (13) | C16—C15—H15A | 108.7 |
C3—C4—H4 | 121.5 | C16'—C15—H15B | 101.4 |
C5—C4—H4 | 121.5 | N2—C15—H15B | 108.7 |
C6—C5—C4 | 121.55 (13) | C16—C15—H15B | 108.7 |
C6—C5—H5 | 119.2 | H15A—C15—H15B | 107.6 |
C4—C5—H5 | 119.2 | C21—C16—C17 | 119.6 (3) |
C5—C6—C7 | 120.43 (13) | C21—C16—C15 | 121.4 (3) |
C5—C6—H6 | 119.8 | C17—C16—C15 | 118.9 (3) |
C7—C6—H6 | 119.8 | C16—C17—C18 | 119.8 (3) |
C8—C7—C6 | 118.64 (13) | C16—C17—H17 | 120.1 |
C8—C7—H7 | 120.7 | C18—C17—H17 | 120.1 |
C6—C7—H7 | 120.7 | C19—C18—C17 | 120.4 (2) |
C7—C8—C3 | 119.95 (12) | C19—C18—H18 | 119.8 |
C7—C8—C9 | 131.44 (12) | C17—C18—H18 | 119.8 |
C3—C8—C9 | 108.58 (11) | C18—C19—C20 | 120.0 (3) |
C9—O9—H9 | 109.5 | C18—C19—H19 | 120.0 |
O9—C9—C8 | 112.56 (10) | C20—C19—H19 | 120.0 |
O9—C9—C1 | 112.14 (10) | C19—C20—C21 | 120.2 (3) |
C8—C9—C1 | 101.67 (9) | C19—C20—H20 | 119.9 |
O9—C9—C10 | 110.23 (9) | C21—C20—H20 | 119.9 |
C8—C9—C10 | 110.90 (9) | C16—C21—C20 | 120.0 (3) |
C1—C9—C10 | 109.04 (9) | C16—C21—H21 | 120.0 |
N14—C10—C11 | 100.73 (9) | C20—C21—H21 | 120.0 |
N14—C10—C9 | 110.50 (9) | C17'—C16'—C21' | 117.0 (18) |
C11—C10—C9 | 112.80 (9) | C17'—C16'—C15 | 120.0 (18) |
N14—C10—H10 | 110.8 | C21'—C16'—C15 | 123.0 (16) |
C11—C10—H10 | 110.8 | C16'—C17'—C18' | 122.8 (14) |
C9—C10—H10 | 110.8 | C16'—C17'—H17' | 118.6 |
O11—C11—N12 | 126.63 (11) | C18'—C17'—H17' | 118.6 |
O11—C11—C10 | 123.45 (11) | C19'—C18'—C17' | 117.6 (12) |
N12—C11—C10 | 109.88 (10) | C19'—C18'—H18' | 121.2 |
C13—N12—C11 | 105.83 (10) | C17'—C18'—H18' | 121.2 |
C13—N13—H13A | 120.0 | C20'—C19'—C18' | 120.5 (16) |
C13—N13—H13B | 120.0 | C20'—C19'—H19' | 119.8 |
H13A—N13—H13B | 120.0 | C18'—C19'—H19' | 119.8 |
N13—C13—N14 | 122.37 (11) | C19'—C20'—C21' | 119.9 (19) |
N13—C13—N12 | 122.79 (11) | C19'—C20'—H20' | 120.0 |
N14—C13—N12 | 114.84 (10) | C21'—C20'—H20' | 120.0 |
C13—N14—C10 | 108.04 (9) | C16'—C21'—C20' | 122.2 (19) |
C13—N14—C14 | 125.31 (10) | C16'—C21'—H21' | 118.9 |
C10—N14—C14 | 126.52 (10) | C20'—C21'—H21' | 118.9 |
N14—C14—H14A | 109.5 | ||
O1—C1—N2—C3 | −176.47 (11) | O11—C11—N12—C13 | −179.47 (11) |
C9—C1—N2—C3 | 3.04 (13) | C10—C11—N12—C13 | −1.45 (12) |
O1—C1—N2—C15 | 5.67 (19) | C11—N12—C13—N13 | 175.47 (11) |
C9—C1—N2—C15 | −174.83 (10) | C11—N12—C13—N14 | −4.15 (13) |
C1—N2—C3—C4 | −179.33 (13) | N13—C13—N14—C10 | −171.44 (10) |
C15—N2—C3—C4 | −1.5 (2) | N12—C13—N14—C10 | 8.18 (13) |
C1—N2—C3—C8 | 1.47 (14) | N13—C13—N14—C14 | 12.39 (18) |
C15—N2—C3—C8 | 179.33 (11) | N12—C13—N14—C14 | −167.99 (10) |
C8—C3—C4—C5 | 1.9 (2) | C11—C10—N14—C13 | −7.92 (11) |
N2—C3—C4—C5 | −177.19 (13) | C9—C10—N14—C13 | 111.54 (10) |
C3—C4—C5—C6 | 0.3 (2) | C11—C10—N14—C14 | 168.19 (10) |
C4—C5—C6—C7 | −1.5 (2) | C9—C10—N14—C14 | −72.35 (14) |
C5—C6—C7—C8 | 0.5 (2) | C1—N2—C15—C16' | −101.9 (9) |
C6—C7—C8—C3 | 1.71 (19) | C3—N2—C15—C16' | 80.6 (9) |
C6—C7—C8—C9 | −176.14 (13) | C1—N2—C15—C16 | −109.52 (19) |
C4—C3—C8—C7 | −3.0 (2) | C3—N2—C15—C16 | 72.9 (2) |
N2—C3—C8—C7 | 176.26 (11) | C16'—C15—C16—C21 | −62 (8) |
C4—C3—C8—C9 | 175.30 (12) | N2—C15—C16—C21 | 50.4 (3) |
N2—C3—C8—C9 | −5.45 (14) | C16'—C15—C16—C17 | 113 (8) |
C7—C8—C9—O9 | −55.07 (17) | N2—C15—C16—C17 | −134.8 (2) |
C3—C8—C9—O9 | 126.90 (11) | C21—C16—C17—C18 | 0.11 (19) |
C7—C8—C9—C1 | −175.25 (13) | C15—C16—C17—C18 | −174.8 (2) |
C3—C8—C9—C1 | 6.72 (12) | C16—C17—C18—C19 | −0.1 (2) |
C7—C8—C9—C10 | 68.94 (17) | C17—C18—C19—C20 | 0.0 (4) |
C3—C8—C9—C10 | −109.09 (11) | C18—C19—C20—C21 | 0.1 (4) |
O1—C1—C9—O9 | 53.15 (15) | C17—C16—C21—C20 | 0.0 (3) |
N2—C1—C9—O9 | −126.36 (11) | C15—C16—C21—C20 | 174.8 (2) |
O1—C1—C9—C8 | 173.61 (11) | C19—C20—C21—C16 | −0.1 (4) |
N2—C1—C9—C8 | −5.89 (12) | N2—C15—C16'—C17' | −161.4 (9) |
O1—C1—C9—C10 | −69.22 (15) | C16—C15—C16'—C17' | −91 (8) |
N2—C1—C9—C10 | 111.28 (11) | N2—C15—C16'—C21' | 22.3 (12) |
O9—C9—C10—N14 | 67.00 (12) | C16—C15—C16'—C21' | 93 (8) |
C8—C9—C10—N14 | −58.33 (12) | C21'—C16'—C17'—C18' | −0.1 (3) |
C1—C9—C10—N14 | −169.48 (10) | C15—C16'—C17'—C18' | −176.5 (14) |
O9—C9—C10—C11 | 178.88 (9) | C16'—C17'—C18'—C19' | −0.1 (3) |
C8—C9—C10—C11 | 53.55 (13) | C17'—C18'—C19'—C20' | 0.2 (7) |
C1—C9—C10—C11 | −57.60 (12) | C18'—C19'—C20'—C21' | −0.2 (9) |
N14—C10—C11—O11 | −176.13 (11) | C17'—C16'—C21'—C20' | 0.1 (7) |
C9—C10—C11—O11 | 66.08 (14) | C15—C16'—C21'—C20' | 176.5 (14) |
N14—C10—C11—N12 | 5.78 (12) | C19'—C20'—C21'—C16' | 0.0 (10) |
C9—C10—C11—N12 | −112.01 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9···N12i | 0.84 | 1.97 | 2.8065 (13) | 175 |
N13—H13A···O11ii | 0.88 | 2.24 | 2.9321 (13) | 135 |
N13—H13B···O1iii | 0.88 | 1.97 | 2.8410 (14) | 173 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) x+1/2, y, −z+3/2; (iii) −x+1, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C19H18N4O3 |
Mr | 350.37 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 90 |
a, b, c (Å) | 13.4466 (2), 10.6921 (2), 27.2057 (5) |
V (Å3) | 3911.43 (12) |
Z | 8 |
Radiation type | Cu Kα |
µ (mm−1) | 0.68 |
Crystal size (mm) | 0.12 × 0.10 × 0.04 |
Data collection | |
Diffractometer | Bruker X8 Proteum CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2006) |
Tmin, Tmax | 0.911, 0.973 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 55165, 3602, 3344 |
Rint | 0.043 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.104, 1.04 |
No. of reflections | 3602 |
No. of parameters | 287 |
No. of restraints | 222 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.30 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XP (Sheldrick, 2008), SHELX97 (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O9—H9···N12i | 0.84 | 1.97 | 2.8065 (13) | 175 |
N13—H13A···O11ii | 0.88 | 2.24 | 2.9321 (13) | 135 |
N13—H13B···O1iii | 0.88 | 1.97 | 2.8410 (14) | 173 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) x+1/2, y, −z+3/2; (iii) −x+1, y+1/2, −z+3/2. |
Acknowledgements
This investigation was supported by NIH/National Cancer Institute grant RO1 CA140409.
References
Bruker (2006). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
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In continuation of our work on the development of anti-cancer agents (Penthala et al., 2010a,b), we have synthesized a series of new compounds containing isatin and creatinine moieties to screen for anticancer activity against a panel of 60 human cancer cell lines (Penthala et al., 2010a). The title compound was prepared by the aldol condensation of N-benzylindol-2,3-dione (N-benzylisatin) with 2-amino-1-methyl-1H-imidazol-4(5H)-one (creatinine) in the presence of sodium acetate in acetic acid. Earlier, we reported on the crystal structure of isatin creatinine analogs containing N-methyl and N-phenyl substituents (Penthala et al., 2009a,b). To obtain detailed information on the structural conformations of the molecules for analysis of structure-activity relationships (SAR), we determined the X-ray crystal structure of the title compound (Fig. 1). In the crystal, the benzyl group is disordered over two positions, with refined occupancies of 0.847 (7) and 0.153 (7). The isatin ring is almost planar, with r.m.s deviations from the mean plane = 0.0508 (11) Å, and with bond distances and angles comparable to those reported for other isatin derivatives (Tang et al., 2009). The benzene ring of the benzyl group makes a dihedral angle with the mean plane of the isatin ring of 82.82 (7)°. The title compound was isolated as a racemate (RR and SS). In the crystal, the molecules are linked into 2-D pleated-sheet networks in the ab plane by a series of intermolecular N—H—O and O—H—N hydrogen bonds. Within these sheets, the hydrogen bonds O9—H···N12, N13—H13A···O11 and N13—H13B···O1 create R22(9) ring motifs.