metal-organic compounds
Bis(2-amino-4-methylpyrimidin-1-ium) hexaaquacobalt(II) disulfate dihydrate
aDepartment of Chemistry, Ferdowsi University of Mashhad, 917751436 Mashhad, Iran, and bDepartment of Chemistry, Tulane University, New Orleans, LA 70118, USA
*Correspondence e-mail: , joelt@tulane.edu
In the title hydrated mixed-cation salt, (C5H8N3)2[Co(H2O)6](SO4)2·2H2O, the complete octahedral hexaaqua complex cation is generated by crystallographic inversion symmetry. In the crystal, the components are linked by O—H⋯O and N—H⋯O hydrogen bonds, the latter, involving pyrimidinium cations and sulfate anions, generating R22(8) loops. These, together with π–π interactions between centrosymmetrically related pyrimidinium cations [centroid–centroid separation = 3.5460 (8) Å], lead to the formation of a three-dimensional network.
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXM (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536813002146/hb7029sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813002146/hb7029Isup2.hkl
An aqueous solution of cobalt(II) sulfate hexahydrate (0.4 mmol, 0.8 mg) in distilled water (5 ml) was added to an aqueous solution of quinoxaline-2,3-dicarboxylic acid (0.11 mmol, 25 mg) and 2-amino-4-methyl pyrimidine (0.24 mmol, 26 mg). The mixture refluxed for 5 hrs at 75°C. Orange blocks were obtained by slow evaporation of the reaction mixture at room temperature.
Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXM (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. Perspective view of the title compound with 50% probability ellipsoids. | |
Fig. 2. Packing of the title compound viewed down a. Hydrogen bonds are indicated by dotted lines. | |
Fig. 3. N—H···O hydrogen bonds and the R22(8) synthons (N2, N3, O5 O6). |
(C5H8N3)2[Co(H2O)6](SO4)2·2H2O | Z = 1 |
Mr = 615.49 | F(000) = 321 |
Triclinic, P1 | Dx = 1.679 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 6.4116 (6) Å | Cell parameters from 8977 reflections |
b = 7.7751 (7) Å | θ = 2.8–29.2° |
c = 13.0423 (12) Å | µ = 0.96 mm−1 |
α = 80.136 (1)° | T = 100 K |
β = 80.413 (1)° | Block, orange |
γ = 73.231 (1)° | 0.19 × 0.19 × 0.12 mm |
V = 608.57 (10) Å3 |
Bruker SMART APEX CCD diffractometer | 3085 independent reflections |
Radiation source: fine-focus sealed tube | 2944 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.025 |
ϕ and ω scans | θmax = 29.2°, θmin = 2.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2009) | h = −8→8 |
Tmin = 0.780, Tmax = 0.893 | k = −10→10 |
10780 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.026 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.073 | H-atom parameters constrained |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0386P)2 + 0.2936P] where P = (Fo2 + 2Fc2)/3 |
3085 reflections | (Δ/σ)max = 0.001 |
161 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
(C5H8N3)2[Co(H2O)6](SO4)2·2H2O | γ = 73.231 (1)° |
Mr = 615.49 | V = 608.57 (10) Å3 |
Triclinic, P1 | Z = 1 |
a = 6.4116 (6) Å | Mo Kα radiation |
b = 7.7751 (7) Å | µ = 0.96 mm−1 |
c = 13.0423 (12) Å | T = 100 K |
α = 80.136 (1)° | 0.19 × 0.19 × 0.12 mm |
β = 80.413 (1)° |
Bruker SMART APEX CCD diffractometer | 3085 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2009) | 2944 reflections with I > 2σ(I) |
Tmin = 0.780, Tmax = 0.893 | Rint = 0.025 |
10780 measured reflections |
R[F2 > 2σ(F2)] = 0.026 | 0 restraints |
wR(F2) = 0.073 | H-atom parameters constrained |
S = 1.09 | Δρmax = 0.59 e Å−3 |
3085 reflections | Δρmin = −0.40 e Å−3 |
161 parameters |
Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5 °. in omega, collected at phi = 0.00, 90.00 and 180.00 °. and 2 sets of 800 frames, each of width 0.45 ° in phi, collected at omega = -30.00 and 210.00 °. The scan time was 10 sec/frame. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while those attached to nitrogen and oxygen were placed in locations derived from a difference map. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms. |
x | y | z | Uiso*/Ueq | ||
Co1 | 1.0000 | 0.5000 | 0.0000 | 0.00955 (8) | |
O1 | 0.68016 (15) | 0.50215 (13) | 0.06589 (8) | 0.01452 (19) | |
H1A | 0.5761 | 0.5965 | 0.0592 | 0.017* | |
H1B | 0.6253 | 0.4255 | 0.1061 | 0.017* | |
O2 | 1.13866 (16) | 0.27066 (13) | 0.09714 (8) | 0.0152 (2) | |
H2A | 1.2384 | 0.2644 | 0.1331 | 0.018* | |
H2B | 1.0513 | 0.2134 | 0.1317 | 0.018* | |
O3 | 1.01700 (15) | 0.67088 (13) | 0.10641 (8) | 0.01429 (19) | |
H3C | 1.1304 | 0.7080 | 0.0967 | 0.017* | |
H3D | 0.9025 | 0.7538 | 0.1193 | 0.017* | |
N1 | 0.77618 (19) | 0.29129 (15) | 0.48276 (9) | 0.0141 (2) | |
N2 | 1.13318 (19) | 0.19273 (15) | 0.53464 (9) | 0.0136 (2) | |
H2N | 1.2214 | 0.1283 | 0.5837 | 0.016* | |
N3 | 0.8459 (2) | 0.09569 (16) | 0.63508 (9) | 0.0169 (2) | |
H3A | 0.9370 | 0.0291 | 0.6825 | 0.020* | |
H3B | 0.7047 | 0.0884 | 0.6443 | 0.020* | |
C1 | 0.9176 (2) | 0.19330 (17) | 0.55062 (10) | 0.0126 (2) | |
C2 | 1.2141 (2) | 0.28771 (18) | 0.44771 (11) | 0.0159 (3) | |
H2 | 1.3655 | 0.2840 | 0.4361 | 0.019* | |
C3 | 1.0775 (2) | 0.38846 (18) | 0.37710 (11) | 0.0164 (3) | |
H3 | 1.1307 | 0.4555 | 0.3155 | 0.020* | |
C4 | 0.8539 (2) | 0.38965 (18) | 0.39882 (10) | 0.0143 (2) | |
C5 | 0.6904 (2) | 0.50542 (19) | 0.32901 (11) | 0.0184 (3) | |
H5A | 0.6319 | 0.4281 | 0.2960 | 0.028* | |
H5B | 0.7619 | 0.5807 | 0.2746 | 0.028* | |
H5C | 0.5701 | 0.5834 | 0.3706 | 0.028* | |
S1 | 0.64309 (5) | 0.07057 (4) | 0.22320 (2) | 0.00995 (8) | |
O4 | 0.48922 (15) | 0.25043 (12) | 0.19945 (8) | 0.01356 (19) | |
O5 | 0.86583 (15) | 0.09036 (13) | 0.22097 (8) | 0.0153 (2) | |
O6 | 0.57348 (16) | −0.01584 (13) | 0.32903 (8) | 0.0148 (2) | |
O7 | 0.64425 (16) | −0.04477 (13) | 0.14342 (8) | 0.0164 (2) | |
O8 | 0.36083 (16) | 0.82758 (13) | 0.05699 (8) | 0.01547 (19) | |
H8A | 0.4119 | 0.8803 | 0.0939 | 0.019* | |
H8B | 0.3513 | 0.8994 | 0.0009 | 0.019* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Co1 | 0.00874 (12) | 0.00915 (12) | 0.01048 (13) | −0.00265 (8) | −0.00139 (9) | 0.00014 (8) |
O1 | 0.0100 (4) | 0.0120 (4) | 0.0190 (5) | −0.0025 (3) | −0.0001 (4) | 0.0023 (3) |
O2 | 0.0128 (4) | 0.0151 (4) | 0.0179 (5) | −0.0061 (4) | −0.0050 (4) | 0.0048 (4) |
O3 | 0.0107 (4) | 0.0149 (4) | 0.0178 (5) | −0.0036 (3) | −0.0001 (4) | −0.0047 (4) |
N1 | 0.0149 (5) | 0.0136 (5) | 0.0133 (5) | −0.0032 (4) | −0.0032 (4) | −0.0005 (4) |
N2 | 0.0125 (5) | 0.0137 (5) | 0.0144 (5) | −0.0030 (4) | −0.0024 (4) | −0.0013 (4) |
N3 | 0.0140 (5) | 0.0206 (6) | 0.0157 (6) | −0.0065 (4) | −0.0047 (4) | 0.0053 (4) |
C1 | 0.0136 (6) | 0.0114 (6) | 0.0130 (6) | −0.0029 (4) | −0.0018 (5) | −0.0025 (4) |
C2 | 0.0150 (6) | 0.0150 (6) | 0.0176 (6) | −0.0052 (5) | 0.0031 (5) | −0.0045 (5) |
C3 | 0.0195 (7) | 0.0142 (6) | 0.0141 (6) | −0.0053 (5) | 0.0031 (5) | −0.0022 (5) |
C4 | 0.0187 (6) | 0.0119 (6) | 0.0119 (6) | −0.0028 (5) | −0.0015 (5) | −0.0033 (4) |
C5 | 0.0222 (7) | 0.0171 (6) | 0.0155 (6) | −0.0049 (5) | −0.0061 (5) | 0.0017 (5) |
S1 | 0.00895 (15) | 0.01018 (15) | 0.01081 (15) | −0.00313 (11) | −0.00176 (11) | −0.00010 (11) |
O4 | 0.0121 (4) | 0.0105 (4) | 0.0172 (5) | −0.0015 (3) | −0.0033 (4) | −0.0003 (3) |
O5 | 0.0103 (4) | 0.0192 (5) | 0.0165 (5) | −0.0067 (4) | −0.0035 (4) | 0.0039 (4) |
O6 | 0.0126 (4) | 0.0167 (5) | 0.0139 (5) | −0.0054 (4) | −0.0010 (4) | 0.0033 (4) |
O7 | 0.0178 (5) | 0.0149 (5) | 0.0171 (5) | −0.0022 (4) | −0.0044 (4) | −0.0054 (4) |
O8 | 0.0165 (5) | 0.0142 (4) | 0.0172 (5) | −0.0062 (4) | −0.0021 (4) | −0.0024 (4) |
Co1—O1 | 2.0838 (9) | N3—H3A | 0.9099 |
Co1—O1i | 2.0838 (9) | N3—H3B | 0.9100 |
Co1—O2 | 2.0643 (9) | N3—C1 | 1.3216 (17) |
Co1—O2i | 2.0643 (9) | C2—H2 | 0.9500 |
Co1—O3i | 2.1140 (10) | C2—C3 | 1.362 (2) |
Co1—O3 | 2.1140 (10) | C3—H3 | 0.9500 |
O1—H1A | 0.8400 | C3—C4 | 1.412 (2) |
O1—H1B | 0.8400 | C4—C5 | 1.4935 (19) |
O2—H2A | 0.8400 | C5—H5A | 0.9800 |
O2—H2B | 0.8400 | C5—H5B | 0.9800 |
O3—H3C | 0.8400 | C5—H5C | 0.9800 |
O3—H3D | 0.8400 | S1—O4 | 1.4772 (10) |
N1—C1 | 1.3503 (17) | S1—O5 | 1.4749 (9) |
N1—C4 | 1.3352 (17) | S1—O6 | 1.4851 (10) |
N2—H2N | 0.9101 | S1—O7 | 1.4834 (10) |
N2—C1 | 1.3621 (17) | O8—H8A | 0.8400 |
N2—C2 | 1.3558 (17) | O8—H8B | 0.8400 |
O1i—Co1—O1 | 180.0 | H3A—N3—H3B | 118.7 |
O1i—Co1—O3 | 89.31 (4) | C1—N3—H3A | 121.5 |
O1—Co1—O3 | 90.69 (4) | C1—N3—H3B | 119.7 |
O1i—Co1—O3i | 90.69 (4) | N1—C1—N2 | 121.68 (12) |
O1—Co1—O3i | 89.31 (4) | N3—C1—N1 | 119.51 (12) |
O2i—Co1—O1i | 93.59 (4) | N3—C1—N2 | 118.82 (12) |
O2—Co1—O1 | 93.59 (4) | N2—C2—H2 | 120.1 |
O2i—Co1—O1 | 86.41 (4) | N2—C2—C3 | 119.73 (13) |
O2—Co1—O1i | 86.41 (4) | C3—C2—H2 | 120.1 |
O2—Co1—O2i | 180.0 | C2—C3—H3 | 121.2 |
O2i—Co1—O3 | 88.21 (4) | C2—C3—C4 | 117.61 (12) |
O2i—Co1—O3i | 91.79 (4) | C4—C3—H3 | 121.2 |
O2—Co1—O3i | 88.21 (4) | N1—C4—C3 | 122.45 (12) |
O2—Co1—O3 | 91.79 (4) | N1—C4—C5 | 116.47 (12) |
O3—Co1—O3i | 180.0 | C3—C4—C5 | 121.07 (12) |
Co1—O1—H1A | 121.3 | C4—C5—H5A | 109.5 |
Co1—O1—H1B | 133.1 | C4—C5—H5B | 109.5 |
H1A—O1—H1B | 105.3 | C4—C5—H5C | 109.5 |
Co1—O2—H2A | 123.6 | H5A—C5—H5B | 109.5 |
Co1—O2—H2B | 115.8 | H5A—C5—H5C | 109.5 |
H2A—O2—H2B | 109.5 | H5B—C5—H5C | 109.5 |
Co1—O3—H3C | 116.1 | O4—S1—O6 | 110.08 (6) |
Co1—O3—H3D | 115.8 | O4—S1—O7 | 108.96 (6) |
H3C—O3—H3D | 112.0 | O5—S1—O4 | 109.75 (6) |
C4—N1—C1 | 117.86 (12) | O5—S1—O6 | 108.84 (6) |
C1—N2—H2N | 118.7 | O5—S1—O7 | 109.68 (6) |
C2—N2—H2N | 120.7 | O7—S1—O6 | 109.52 (6) |
C2—N2—C1 | 120.59 (12) | H8A—O8—H8B | 102.1 |
N2—C2—C3—C4 | 0.4 (2) | C2—N2—C1—N3 | 178.45 (12) |
C1—N1—C4—C3 | 2.59 (19) | C2—C3—C4—N1 | −2.6 (2) |
C1—N1—C4—C5 | −176.26 (12) | C2—C3—C4—C5 | 176.18 (12) |
C1—N2—C2—C3 | 1.75 (19) | C4—N1—C1—N2 | −0.37 (19) |
C2—N2—C1—N1 | −1.82 (19) | C4—N1—C1—N3 | 179.37 (12) |
Symmetry code: (i) −x+2, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O8 | 0.84 | 1.92 | 2.7562 (14) | 171 |
O1—H1B···O4 | 0.84 | 1.97 | 2.8050 (13) | 178 |
O2—H2A···O4ii | 0.84 | 1.92 | 2.7533 (14) | 173 |
O2—H2B···O5 | 0.84 | 1.87 | 2.7077 (13) | 174 |
O3—H3C···O8ii | 0.84 | 1.92 | 2.7508 (13) | 170 |
O3—H3D···O7iii | 0.84 | 1.95 | 2.7865 (14) | 177 |
N2—H2N···O6iv | 0.91 | 1.81 | 2.7155 (15) | 172 |
N3—H3A···O5iv | 0.91 | 1.87 | 2.7776 (15) | 175 |
N3—H3B···O6v | 0.91 | 1.98 | 2.8775 (15) | 168 |
O8—H8A···O7iii | 0.84 | 1.98 | 2.7684 (14) | 156 |
O8—H8B···O7vi | 0.84 | 2.02 | 2.8582 (14) | 172 |
Symmetry codes: (ii) x+1, y, z; (iii) x, y+1, z; (iv) −x+2, −y, −z+1; (v) −x+1, −y, −z+1; (vi) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | (C5H8N3)2[Co(H2O)6](SO4)2·2H2O |
Mr | 615.49 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 6.4116 (6), 7.7751 (7), 13.0423 (12) |
α, β, γ (°) | 80.136 (1), 80.413 (1), 73.231 (1) |
V (Å3) | 608.57 (10) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.96 |
Crystal size (mm) | 0.19 × 0.19 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2009) |
Tmin, Tmax | 0.780, 0.893 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10780, 3085, 2944 |
Rint | 0.025 |
(sin θ/λ)max (Å−1) | 0.686 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.026, 0.073, 1.09 |
No. of reflections | 3085 |
No. of parameters | 161 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.40 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2009), SHELXM (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O8 | 0.84 | 1.92 | 2.7562 (14) | 171 |
O1—H1B···O4 | 0.84 | 1.97 | 2.8050 (13) | 178 |
O2—H2A···O4i | 0.84 | 1.92 | 2.7533 (14) | 173 |
O2—H2B···O5 | 0.84 | 1.87 | 2.7077 (13) | 174 |
O3—H3C···O8i | 0.84 | 1.92 | 2.7508 (13) | 170 |
O3—H3D···O7ii | 0.84 | 1.95 | 2.7865 (14) | 177 |
N2—H2N···O6iii | 0.91 | 1.81 | 2.7155 (15) | 172 |
N3—H3A···O5iii | 0.91 | 1.87 | 2.7776 (15) | 175 |
N3—H3B···O6iv | 0.91 | 1.98 | 2.8775 (15) | 168 |
O8—H8A···O7ii | 0.84 | 1.98 | 2.7684 (14) | 156 |
O8—H8B···O7v | 0.84 | 2.02 | 2.8582 (14) | 172 |
Symmetry codes: (i) x+1, y, z; (ii) x, y+1, z; (iii) −x+2, −y, −z+1; (iv) −x+1, −y, −z+1; (v) −x+1, −y+1, −z. |
Acknowledgements
We thank the Chemistry Department of Tulane University for support of the X-ray crystallographic facility.
References
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Sheldrick, G. M. (2009). SADABS. University of Göttingen, Germany. Google Scholar
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In an attempt to synthesize a cobalt complex of quinoxaline-2,3-dicarboxylic acid by conventional proton transfer processes, cobalt(II) sulfate hexahydrate and the acid were reacted with 2-amino-4-methylpyrimidine. The crystalline product obtained proved to be [Co(H2O)6][2a-4m-pym]2(SO4)2.2H2O (2a-4m-pym = 2-amino-4-methylpyrimidinium) with the cobalt cation having crystallographiclly imposed centrosymmetry (Fig. 1). The Co—O distances range from 2.0643 (9) to 2.1140 (10) A° while the O—Co—O angles range from 90.69 (4) to 93.59 (4)° leading to a somewhat distorted octahedral coordination geometry. The [Co(H2O)6]2+ cations and uncoordinated water molecules form sheets parallel to [110] which are capped on both sides by sulfate ions and held together by O—H···O hydrogen bonds (Fig. 2). N—H···O interactions bind the pyrimidinium cations to the sulfate ions (Fig. 3) with the cations from adjacent sheets intercalating one another (Fig. 2) and stabilized by pairwise π···π (3.546 A°) interactions between them (center pair of cations in Fig. 2). The N2—H2n···O6 and N3—H3a···O5 hydrogen bonding interactions generate R22(8) synthons.