organic compounds
1,3-Bis[(tert-butylsulfanyl)methyl]-2,4,6-trimethylbenzene
aInstituto de Química, Universidad Nacional Autónoma de México, Circuito exterior, Ciudad Universitaria, México, D.F., 04510, México, and bCiencias Básicas e Ingeniería, Recursos de la Tierra, Universidad Autónoma, Metropolitana. Av. Hidalgo Poniente, La Estación Lerma, Lerma de Villada Estado de México, CP 52006, México
*Correspondence e-mail: damor@unam.mx
The complete molecule of the title compound, C19H32S2, is generated by crystallorgaphic twofold symmetry, with three C atoms lying on the axis. The Car—C—S—C (ar = aromatic) torsion angle is 156.2 (2) °. In the crystal, the molecules are linked by very weak C—H⋯S interactions, generating [001] chains.
Related literature
For pincer complexes, see: Morales-Morales et al. (2007); Morales-Morales (2004); Serrano-Becerra & Morales-Morales (2009). For uses of SCS pincer complexes in catalysis, see: Morales-Morales et al. (2007); Singleton (2003). For the structure of the pincer SCS ligand 1,3-bis[(naphthalen-2-ylsufanyl)methyl]benzene, see: Padilla-Mata et al. (2012).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813002249/hb7031sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813002249/hb7031Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813002249/hb7031Isup3.cml
To a suspension of NaH (9 mg, 0.38 mmol) on freshly distilled THF (20 ml), 2-methyl-2-propanethiol (30 µL, 0.3 mmol) was slowly added. The resulting reaction mixture was allowed to proceed for 10 min. After this time, a solution of 2,4-bis-bromomethyl-1,3,5-trimethylbenzene (100 mg, 0.3 mmol) in THF (10 ml) was slowly added and the resulting mixture allowed to proceed for further 5 h under stirring at room temperature. After this time the mixture was filtered under vacuum through a short plug of Celite® and the resulting THF solution evaporated in a rotary evaporator to afford the product in a 97% yield. Yellow prisms were obtained by slow evaporation a CH2Cl2
of the title compound.H atoms were included in calculate positions (C—H = 0.93 Å for aromatic H, C—H = 0.97 Å for methylene H, and C—H = 0.96 Å for methyl H), and refined used riding model, with Uiso(H) = 1.2 Ueq of the
C5 atom is on the twofold axis and their H-atoms were refined with half occupation.Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C19H32S2 | F(000) = 712 |
Mr = 324.57 | Dx = 1.134 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2375 reflections |
a = 14.870 (4) Å | θ = 2.8–24.9° |
b = 14.233 (3) Å | µ = 0.27 mm−1 |
c = 9.245 (2) Å | T = 298 K |
β = 103.693 (4)° | Prism, yellow |
V = 1901.1 (8) Å3 | 0.34 × 0.09 × 0.06 mm |
Z = 4 |
Bruker SMART APEX CCD diffractometer | 1022 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.084 |
Graphite monochromator | θmax = 25.4°, θmin = 2.0° |
Detector resolution: 0.83 pixels mm-1 | h = −17→17 |
ω scans | k = −17→17 |
10088 measured reflections | l = −11→11 |
1743 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.055 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 0.93 | w = 1/[σ2(Fo2) + (0.0718P)2] where P = (Fo2 + 2Fc2)/3 |
1743 reflections | (Δ/σ)max < 0.001 |
102 parameters | Δρmax = 0.30 e Å−3 |
0 restraints | Δρmin = −0.15 e Å−3 |
C19H32S2 | V = 1901.1 (8) Å3 |
Mr = 324.57 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 14.870 (4) Å | µ = 0.27 mm−1 |
b = 14.233 (3) Å | T = 298 K |
c = 9.245 (2) Å | 0.34 × 0.09 × 0.06 mm |
β = 103.693 (4)° |
Bruker SMART APEX CCD diffractometer | 1022 reflections with I > 2σ(I) |
10088 measured reflections | Rint = 0.084 |
1743 independent reflections |
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.143 | H-atom parameters constrained |
S = 0.93 | Δρmax = 0.30 e Å−3 |
1743 reflections | Δρmin = −0.15 e Å−3 |
102 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
S1 | 0.27026 (6) | 0.42315 (7) | 0.11668 (9) | 0.0588 (3) | |
C1 | 0.5000 | 0.4725 (3) | 0.2500 | 0.0394 (10) | |
C2 | 0.43183 (18) | 0.5219 (2) | 0.1470 (3) | 0.0394 (7) | |
C3 | 0.4300 (2) | 0.6195 (2) | 0.1501 (3) | 0.0450 (8) | |
C4 | 0.5000 | 0.6656 (3) | 0.2500 | 0.0493 (12) | |
H4 | 0.5000 | 0.7309 | 0.2500 | 0.059* | |
C5 | 0.5000 | 0.3672 (3) | 0.2500 | 0.0533 (12) | |
H5A | 0.4374 | 0.3447 | 0.2240 | 0.064* | 0.50 |
H5B | 0.5301 | 0.3447 | 0.3473 | 0.064* | 0.50 |
H5C | 0.5325 | 0.3447 | 0.1787 | 0.064* | 0.50 |
C6 | 0.3595 (2) | 0.4693 (2) | 0.0319 (3) | 0.0457 (8) | |
H6A | 0.3887 | 0.4180 | −0.0090 | 0.055* | |
H6B | 0.3319 | 0.5113 | −0.0489 | 0.055* | |
C7 | 0.3549 (2) | 0.6770 (3) | 0.0509 (4) | 0.0659 (11) | |
H7A | 0.3681 | 0.7426 | 0.0682 | 0.079* | |
H7B | 0.2964 | 0.6626 | 0.0727 | 0.079* | |
H7C | 0.3523 | 0.6624 | −0.0514 | 0.079* | |
C8 | 0.1680 (2) | 0.4088 (3) | −0.0369 (4) | 0.0602 (10) | |
C9 | 0.1911 (3) | 0.3565 (3) | −0.1670 (4) | 0.0769 (12) | |
H9A | 0.2187 | 0.2970 | −0.1333 | 0.092* | |
H9B | 0.2338 | 0.3931 | −0.2071 | 0.092* | |
H9C | 0.1355 | 0.3465 | −0.2428 | 0.092* | |
C10 | 0.1274 (3) | 0.5047 (3) | −0.0864 (5) | 0.0895 (14) | |
H10A | 0.1707 | 0.5401 | −0.1267 | 0.107* | |
H10B | 0.1149 | 0.5375 | −0.0026 | 0.107* | |
H10C | 0.0709 | 0.4970 | −0.1613 | 0.107* | |
C11 | 0.1000 (3) | 0.3515 (3) | 0.0281 (5) | 0.0908 (14) | |
H11A | 0.0433 | 0.3434 | −0.0461 | 0.109* | |
H11B | 0.0876 | 0.3839 | 0.1124 | 0.109* | |
H11C | 0.1263 | 0.2910 | 0.0590 | 0.109* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0377 (5) | 0.0830 (7) | 0.0509 (5) | −0.0087 (5) | 0.0007 (4) | 0.0007 (5) |
C1 | 0.026 (2) | 0.046 (3) | 0.047 (3) | 0.000 | 0.0103 (19) | 0.000 |
C2 | 0.0263 (15) | 0.054 (2) | 0.0369 (17) | −0.0008 (14) | 0.0050 (13) | 0.0008 (14) |
C3 | 0.0347 (17) | 0.051 (2) | 0.049 (2) | 0.0049 (15) | 0.0097 (15) | 0.0073 (16) |
C4 | 0.049 (3) | 0.037 (3) | 0.063 (3) | 0.000 | 0.014 (2) | 0.000 |
C5 | 0.036 (2) | 0.044 (3) | 0.074 (3) | 0.000 | 0.002 (2) | 0.000 |
C6 | 0.0341 (16) | 0.059 (2) | 0.0400 (17) | −0.0006 (15) | 0.0012 (14) | 0.0023 (15) |
C7 | 0.057 (2) | 0.067 (2) | 0.068 (3) | 0.0117 (19) | 0.004 (2) | 0.0121 (19) |
C8 | 0.0406 (18) | 0.071 (2) | 0.062 (2) | −0.0081 (18) | −0.0016 (17) | −0.0020 (19) |
C9 | 0.071 (3) | 0.086 (3) | 0.066 (3) | −0.013 (2) | 0.001 (2) | −0.011 (2) |
C10 | 0.055 (2) | 0.089 (3) | 0.108 (3) | 0.012 (2) | −0.015 (2) | 0.000 (3) |
C11 | 0.048 (2) | 0.118 (4) | 0.104 (3) | −0.026 (3) | 0.014 (2) | −0.013 (3) |
S1—C6 | 1.816 (3) | C7—H7A | 0.9600 |
S1—C8 | 1.829 (3) | C7—H7B | 0.9600 |
C1—C2 | 1.404 (3) | C7—H7C | 0.9600 |
C1—C2i | 1.404 (3) | C8—C9 | 1.522 (5) |
C1—C5 | 1.499 (6) | C8—C10 | 1.518 (5) |
C2—C3 | 1.390 (4) | C8—C11 | 1.530 (5) |
C2—C6 | 1.520 (4) | C9—H9A | 0.9600 |
C3—C4 | 1.383 (4) | C9—H9B | 0.9600 |
C3—C7 | 1.508 (4) | C9—H9C | 0.9600 |
C4—C3i | 1.383 (4) | C10—H10A | 0.9600 |
C4—H4 | 0.9300 | C10—H10B | 0.9600 |
C5—H5A | 0.9600 | C10—H10C | 0.9600 |
C5—H5B | 0.9600 | C11—H11A | 0.9600 |
C5—H5C | 0.9600 | C11—H11B | 0.9600 |
C6—H6A | 0.9700 | C11—H11C | 0.9600 |
C6—H6B | 0.9700 | ||
C6—S1—C8 | 105.25 (15) | C3—C7—H7C | 109.5 |
C2—C1—C2i | 119.9 (4) | H7A—C7—H7C | 109.5 |
C2—C1—C5 | 120.0 (2) | H7B—C7—H7C | 109.5 |
C2i—C1—C5 | 120.0 (2) | C9—C8—C10 | 110.4 (3) |
C3—C2—C1 | 120.1 (3) | C9—C8—C11 | 110.1 (3) |
C3—C2—C6 | 119.5 (3) | C10—C8—C11 | 110.2 (3) |
C1—C2—C6 | 120.4 (3) | C9—C8—S1 | 111.5 (3) |
C4—C3—C2 | 118.2 (3) | C10—C8—S1 | 109.4 (2) |
C4—C3—C7 | 118.7 (3) | C11—C8—S1 | 105.1 (2) |
C2—C3—C7 | 123.1 (3) | C8—C9—H9A | 109.5 |
C3i—C4—C3 | 123.3 (4) | C8—C9—H9B | 109.5 |
C3i—C4—H4 | 118.3 | H9A—C9—H9B | 109.5 |
C3—C4—H4 | 118.3 | C8—C9—H9C | 109.5 |
C1—C5—H5A | 109.5 | H9A—C9—H9C | 109.5 |
C1—C5—H5B | 109.5 | H9B—C9—H9C | 109.5 |
H5A—C5—H5B | 109.5 | C8—C10—H10A | 109.5 |
C1—C5—H5C | 109.5 | C8—C10—H10B | 109.5 |
H5A—C5—H5C | 109.5 | H10A—C10—H10B | 109.5 |
H5B—C5—H5C | 109.5 | C8—C10—H10C | 109.5 |
C2—C6—S1 | 110.1 (2) | H10A—C10—H10C | 109.5 |
C2—C6—H6A | 109.6 | H10B—C10—H10C | 109.5 |
S1—C6—H6A | 109.6 | C8—C11—H11A | 109.5 |
C2—C6—H6B | 109.6 | C8—C11—H11B | 109.5 |
S1—C6—H6B | 109.6 | H11A—C11—H11B | 109.5 |
H6A—C6—H6B | 108.2 | C8—C11—H11C | 109.5 |
C3—C7—H7A | 109.5 | H11A—C11—H11C | 109.5 |
C3—C7—H7B | 109.5 | H11B—C11—H11C | 109.5 |
H7A—C7—H7B | 109.5 | ||
C2i—C1—C2—C3 | −2.1 (2) | C2—C3—C4—C3i | −2.0 (2) |
C5—C1—C2—C3 | 177.9 (2) | C7—C3—C4—C3i | 177.4 (3) |
C2i—C1—C2—C6 | 178.1 (3) | C3—C2—C6—S1 | −101.5 (3) |
C5—C1—C2—C6 | −1.9 (3) | C1—C2—C6—S1 | 78.3 (3) |
C1—C2—C3—C4 | 4.1 (4) | C8—S1—C6—C2 | 156.2 (2) |
C6—C2—C3—C4 | −176.1 (2) | C6—S1—C8—C9 | 49.3 (3) |
C1—C2—C3—C7 | −175.3 (2) | C6—S1—C8—C10 | −73.2 (3) |
C6—C2—C3—C7 | 4.5 (5) | C6—S1—C8—C11 | 168.5 (3) |
Symmetry code: (i) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10A···S1ii | 0.96 | 3.11 | 3.980 (5) | 151 |
Symmetry code: (ii) x, −y+1, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C19H32S2 |
Mr | 324.57 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 298 |
a, b, c (Å) | 14.870 (4), 14.233 (3), 9.245 (2) |
β (°) | 103.693 (4) |
V (Å3) | 1901.1 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.34 × 0.09 × 0.06 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10088, 1743, 1022 |
Rint | 0.084 |
(sin θ/λ)max (Å−1) | 0.603 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.143, 0.93 |
No. of reflections | 1743 |
No. of parameters | 102 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.30, −0.15 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and ORTEP-3 for Windows (Farrugia, 2012), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10A···S1i | 0.96 | 3.11 | 3.980 (5) | 151 |
Symmetry code: (i) x, −y+1, z−1/2. |
Acknowledgements
EP-M and RR-M (postdoctoral agreements No. 290662 and 290586 UNAM) would like to thank CONACYT for scholarships. The financial support of this research by CONACYT (CB2010–154732) and DGAPA-UNAM (IN201711) is gratefully acknowledged. JMG-A would like to thank the Universidad Autónoma Metropolitana, Unidad Lerma, for financial support. DM-M acknowledges Dr Simón Hernández-Ortega for technical assistance.
References
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The fine tuning of both steric and electronic properties of pincer ligands is one of the most important goals for both organic and inorganic chemists nowdays, being this possible by the systematic variations and change of both the donor atoms and their substituents in the side arms of this current widely used ligands. Through the years, pincer complexes have become an important tool for synthetic organic chemists, mostly due to their well know robustness, thermal stability and unusual reactivities (Morales-Morales et al., 2007; Morales-Morales, 2004; Serrano-Becerra et al., 2009). Recently, non-phosphine-based ligands and their transition metal complexes have gained considerable attention as suitable and valuable alternatives in transition metal catalysed organic transformations. In this sense, SCS pincer complexes have shown to be efficient as potential catalysts in aldol reactions and Mizoroki-Heck and Suzuki-Miyaura couplings (Singleton, 2003). Previously, we have reported the structure of the pincer SCS ligand 1,3-Bis[(naphthalen-2-ylsufanyl)methyl]benzene (Padilla-Mata et al., 2012). Thus, in this opportunity we report here the crystal structure of the potential pincer ligand [2,4,6-trimethyl-1,3-bis(tert-butylsulfanyl)methyl]benzene, the molecular structure is shown in Figure 1.
In the asymmetric unit only half molecule of the title compound is found and a twofold axis is needed to complete the molecule. The (tert-butylsulfanyl)methyl moieties are up and down the plane of the phenyl ring with a torsion angle of 156.2 (2)° (C8—S1—C6—C2). The H atoms of the methyl group in the 2 position exhibit disorder in the crystal structure. The molecules in the crystal are linked by weak centrosymmetric intermolecular interactions C10—H10A···S1 with a distance of 3.11 Å, values that are only slightly higher to the sum of the van der Waals radii H—S (3.0 Å). These interactions generate a chain along the c axis direction.