organic compounds
(S)-2,2′-Dihydroxy-N,N′-(6-hydroxyhexane-1,5-diyl)dibenzamide
aFachrichtung Chemie, Universität des Saarlandes, Postfach 151150, D-66041 Saarbrücken, Germany
*Correspondence e-mail: hegetschweiler@mx.uni-saarland.de
In the title compound, C20H24N2O5, the dihedral angle between the two roughly planar salicylamide fragments [r.m.s. deviations = 0.043 (2) and 0.149 (2) Å] is 25.50 (5)°. The molecular conformation is stabilized by intramolecular O—H⋯O hydrogen bonds involving phenol –OH groups and amide O atoms. Intermolecular hydroxymethyl–amide O—H⋯O and amine–hydroxymethyl N—H⋯O hydrogen bonds form infinite chains along the b axis. These chains are further interlinked by amine–amide N—H⋯O and phenol–phenol O—H⋯O interactions, thus giving layers parallel to (001).
Related literature
For the isolation and physico-chemical properties of myxochelin A, see: Kunze et al. (1989). For the of N,N′-(pentane-1,5-diyl)bis(3-methoxysalicylamide), see: Huang et al. (1995). For metal complex formation with linear bis-catechol and linear bis-salicylamides, see: Duhme et al. (1996); Huang et al. (1995); Cappillino et al. (2009); Stoicescu et al. (2009). For the treatment of H atoms in SHELXL, see: Müller et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536813000354/yk2084sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813000354/yk2084Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813000354/yk2084Isup3.cml
2-Hydroxybenzoic acid was allowed to react with benzyl bromide in acetone yielding 2-benzyloxy-benzoic acid, which was further transformed into (S)-2,6-bis(2-benzoxybenzamido)-hexan-1-ol in a two-step procedure, using thionyl chloride and subsequently (S)-2,6-diaminohexan-1-ol. The protecting benzoxy groups were then removed with ammonium formate and Pd/C. Off-white single crystals were grown from MeOH. Elemental analysis calculated for C20H24N2O5 (%): C 64.50, H 6.50, N 7.52; found (%): C 64.19, H 6.35, N 7.50. 1H NMR (DMSO-d6): δ (p.p.m.) = 1.38 (m, 2H), 1.62 (m, 4H), 3.30 (dt, 2H), 3.48 (m, 2H), 4.04 (m, 1H), 6.89 (m, 4H), 7.40 (m, 2H), 7.84 (dd, 1H), 7.94 (dd, 1H), 8.47 (d, NH), 8.85 (t, NH). 13C NMR (DMSO-d6): δ (p.p.m.) = 23.1, 28.7, 30.1, 38.8, 51.0, 62.9, 115.0, 115.4, 117.2, 117.3, 118.3, 127.4, 127.9, 133.4, 133.5, 160.0, 160.2.
In accordance with the use of the chiral and
(S)-2,6-diaminohexan-1-ol as one of the starting materials, the title compound crystallized in a Sohncke The structure contains, however, only H, C, N and O atoms and an assignment of an was thus not possible. Therefore, a total of 1572 Friedel pairs were merged prior to the and the S-configuration of the diaminohexanol was adopted to the title compound. All H atoms could be located. They were treated as recommended by Müller et al. (2006); a riding model was used for H(—C) atoms. The positional parameters of the O- and N-bonded H atoms were refined using isotropic displacement parameters, which were set to 1.5Ueq or 1.2Ueq of the pivotal O or N atom, respectively. In addition, restraints of 0.84 and 0.88 Å were used for the O—H and N—H distances.Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Ellipsoid plot (50% probability level) and numbering scheme of the title compound. | |
Fig. 2. Section of a strand generated by a 21 screw (with intra- and intermolecular hydrogen bonds shown as green and black dashed lines, respectively); interlinking of such strands by additional N—H···O(amide) and O(phenolic)—H···O(phenolic) hydrogen bonding is indicated by yellow dashed lines. C atoms (black) are shown as a stick model; O (red), N (blue), H(—O) and H(—N) atoms are shown as spheres of arbitrary size. H(—C) atoms are omitted for clarity. |
C20H24N2O5 | F(000) = 396 |
Mr = 372.41 | Dx = 1.357 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 4681 reflections |
a = 9.5934 (7) Å | θ = 2.8–29.3° |
b = 9.2266 (7) Å | µ = 0.10 mm−1 |
c = 10.3565 (7) Å | T = 123 K |
β = 96.172 (4)° | Prism, light brown |
V = 911.39 (11) Å3 | 0.26 × 0.21 × 0.04 mm |
Z = 2 |
Bruker Nonius X8 APEX diffractometer | 2111 independent reflections |
Radiation source: fine-focus sealed tube | 1943 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
Detector resolution: 8.4 pixels mm-1 | θmax = 27.0°, θmin = 2.0° |
ϕ and ω scans | h = −12→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | k = −11→9 |
Tmin = 0.975, Tmax = 0.996 | l = −13→13 |
10366 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.076 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0425P)2 + 0.1259P] where P = (Fo2 + 2Fc2)/3 |
2111 reflections | (Δ/σ)max < 0.001 |
259 parameters | Δρmax = 0.21 e Å−3 |
6 restraints | Δρmin = −0.22 e Å−3 |
C20H24N2O5 | V = 911.39 (11) Å3 |
Mr = 372.41 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 9.5934 (7) Å | µ = 0.10 mm−1 |
b = 9.2266 (7) Å | T = 123 K |
c = 10.3565 (7) Å | 0.26 × 0.21 × 0.04 mm |
β = 96.172 (4)° |
Bruker Nonius X8 APEX diffractometer | 2111 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | 1943 reflections with I > 2σ(I) |
Tmin = 0.975, Tmax = 0.996 | Rint = 0.028 |
10366 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 6 restraints |
wR(F2) = 0.076 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.21 e Å−3 |
2111 reflections | Δρmin = −0.22 e Å−3 |
259 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.4529 (2) | 0.4184 (2) | 0.20414 (18) | 0.0199 (4) | |
C2 | 0.3185 (2) | 0.4340 (2) | 0.13843 (19) | 0.0258 (5) | |
H2 | 0.2437 | 0.3768 | 0.1637 | 0.031* | |
C3 | 0.2930 (2) | 0.5314 (3) | 0.0374 (2) | 0.0313 (5) | |
H3 | 0.2012 | 0.5410 | −0.0062 | 0.038* | |
C4 | 0.4021 (2) | 0.6157 (3) | −0.0004 (2) | 0.0288 (5) | |
H4 | 0.3841 | 0.6832 | −0.0694 | 0.035* | |
C5 | 0.5358 (2) | 0.6018 (3) | 0.06145 (19) | 0.0254 (5) | |
H5 | 0.6098 | 0.6594 | 0.0352 | 0.030* | |
C6 | 0.5621 (2) | 0.5026 (2) | 0.16297 (19) | 0.0210 (4) | |
O6 | 0.69536 (15) | 0.49364 (19) | 0.22033 (15) | 0.0296 (4) | |
H6O | 0.685 (3) | 0.441 (3) | 0.290 (2) | 0.044* | |
C7 | 0.4830 (2) | 0.3244 (2) | 0.32048 (18) | 0.0203 (4) | |
O7 | 0.60410 (15) | 0.32025 (17) | 0.38085 (14) | 0.0273 (4) | |
N8 | 0.37834 (19) | 0.2474 (2) | 0.36263 (16) | 0.0230 (4) | |
H8N | 0.2929 (18) | 0.259 (3) | 0.325 (2) | 0.028* | |
C9 | 0.3912 (2) | 0.1825 (3) | 0.4921 (2) | 0.0284 (5) | |
H9A | 0.4837 | 0.1345 | 0.5091 | 0.034* | |
H9B | 0.3178 | 0.1078 | 0.4960 | 0.034* | |
C10 | 0.3766 (2) | 0.2972 (2) | 0.59675 (19) | 0.0259 (5) | |
H10A | 0.3778 | 0.2490 | 0.6823 | 0.031* | |
H10B | 0.4577 | 0.3640 | 0.6009 | 0.031* | |
C11 | 0.2419 (2) | 0.3837 (2) | 0.56963 (19) | 0.0228 (4) | |
H11A | 0.1620 | 0.3153 | 0.5593 | 0.027* | |
H11B | 0.2440 | 0.4355 | 0.4861 | 0.027* | |
C12 | 0.2160 (2) | 0.4936 (2) | 0.67388 (18) | 0.0213 (4) | |
H12A | 0.3007 | 0.5545 | 0.6932 | 0.026* | |
H12B | 0.1994 | 0.4417 | 0.7545 | 0.026* | |
C13 | 0.0901 (2) | 0.5910 (2) | 0.63192 (18) | 0.0192 (4) | |
H13 | 0.0072 | 0.5277 | 0.6059 | 0.023* | |
C14 | 0.0553 (2) | 0.6883 (2) | 0.74253 (18) | 0.0225 (4) | |
H14A | 0.0368 | 0.6270 | 0.8173 | 0.027* | |
H14B | 0.1377 | 0.7497 | 0.7703 | 0.027* | |
O14 | −0.06297 (15) | 0.77953 (17) | 0.70901 (14) | 0.0272 (4) | |
H14O | −0.044 (3) | 0.857 (2) | 0.672 (2) | 0.041* | |
N15 | 0.11840 (17) | 0.6788 (2) | 0.51866 (15) | 0.0194 (4) | |
H15N | 0.187 (2) | 0.739 (2) | 0.527 (2) | 0.023* | |
C16 | 0.06071 (19) | 0.6524 (2) | 0.39742 (18) | 0.0185 (4) | |
O16 | −0.02958 (14) | 0.55555 (16) | 0.37353 (13) | 0.0234 (3) | |
C17 | 0.1056 (2) | 0.7449 (2) | 0.29126 (18) | 0.0191 (4) | |
C18 | 0.2307 (2) | 0.8247 (2) | 0.30504 (19) | 0.0245 (5) | |
H18 | 0.2899 | 0.8195 | 0.3846 | 0.029* | |
C19 | 0.2701 (2) | 0.9106 (3) | 0.2062 (2) | 0.0290 (5) | |
H19 | 0.3560 | 0.9627 | 0.2174 | 0.035* | |
C20 | 0.1832 (2) | 0.9204 (3) | 0.09003 (19) | 0.0288 (5) | |
H20 | 0.2086 | 0.9811 | 0.0223 | 0.035* | |
C21 | 0.0605 (2) | 0.8422 (3) | 0.07330 (19) | 0.0259 (5) | |
H21 | 0.0018 | 0.8491 | −0.0064 | 0.031* | |
C22 | 0.0211 (2) | 0.7531 (2) | 0.17155 (18) | 0.0213 (4) | |
O22 | −0.10130 (15) | 0.68092 (19) | 0.14603 (14) | 0.0306 (4) | |
H22O | −0.115 (3) | 0.621 (3) | 0.204 (2) | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0203 (10) | 0.0213 (10) | 0.0184 (9) | 0.0025 (8) | 0.0027 (7) | −0.0035 (8) |
C2 | 0.0206 (10) | 0.0316 (13) | 0.0246 (10) | −0.0007 (9) | −0.0001 (8) | 0.0035 (10) |
C3 | 0.0202 (10) | 0.0467 (15) | 0.0256 (11) | 0.0020 (10) | −0.0033 (8) | 0.0057 (10) |
C4 | 0.0328 (12) | 0.0306 (12) | 0.0227 (10) | 0.0027 (10) | 0.0012 (9) | 0.0049 (9) |
C5 | 0.0249 (11) | 0.0276 (12) | 0.0241 (10) | −0.0028 (9) | 0.0053 (8) | 0.0003 (9) |
C6 | 0.0199 (9) | 0.0229 (10) | 0.0199 (9) | 0.0021 (8) | 0.0006 (7) | −0.0051 (9) |
O6 | 0.0168 (7) | 0.0382 (9) | 0.0329 (8) | −0.0023 (7) | −0.0016 (6) | 0.0053 (7) |
C7 | 0.0210 (10) | 0.0190 (10) | 0.0207 (9) | 0.0047 (8) | 0.0017 (8) | −0.0044 (8) |
O7 | 0.0210 (8) | 0.0343 (9) | 0.0260 (7) | 0.0070 (7) | −0.0007 (6) | 0.0038 (7) |
N8 | 0.0239 (9) | 0.0221 (9) | 0.0228 (8) | 0.0022 (8) | 0.0006 (7) | 0.0003 (7) |
C9 | 0.0353 (12) | 0.0225 (11) | 0.0278 (10) | 0.0058 (10) | 0.0053 (9) | 0.0068 (9) |
C10 | 0.0295 (11) | 0.0254 (12) | 0.0224 (10) | 0.0040 (9) | 0.0017 (8) | 0.0058 (9) |
C11 | 0.0214 (10) | 0.0231 (11) | 0.0238 (10) | −0.0014 (9) | 0.0015 (8) | −0.0003 (9) |
C12 | 0.0213 (10) | 0.0224 (10) | 0.0200 (10) | −0.0026 (9) | 0.0008 (8) | 0.0019 (8) |
C13 | 0.0171 (9) | 0.0217 (11) | 0.0187 (9) | −0.0023 (8) | 0.0016 (7) | 0.0033 (8) |
C14 | 0.0220 (10) | 0.0261 (11) | 0.0194 (9) | 0.0018 (9) | 0.0020 (8) | 0.0047 (9) |
O14 | 0.0233 (8) | 0.0274 (9) | 0.0313 (8) | 0.0060 (7) | 0.0049 (6) | 0.0075 (7) |
N15 | 0.0190 (8) | 0.0212 (9) | 0.0173 (8) | −0.0061 (7) | −0.0009 (6) | 0.0013 (7) |
C16 | 0.0161 (9) | 0.0184 (10) | 0.0206 (9) | 0.0031 (8) | 0.0005 (7) | 0.0001 (8) |
O16 | 0.0216 (7) | 0.0227 (7) | 0.0247 (7) | −0.0053 (6) | −0.0028 (6) | −0.0004 (6) |
C17 | 0.0200 (10) | 0.0194 (10) | 0.0178 (9) | 0.0023 (8) | 0.0020 (7) | −0.0025 (8) |
C18 | 0.0213 (10) | 0.0324 (12) | 0.0191 (9) | −0.0033 (9) | −0.0017 (8) | 0.0026 (9) |
C19 | 0.0263 (11) | 0.0345 (13) | 0.0268 (10) | −0.0073 (10) | 0.0058 (9) | 0.0010 (10) |
C20 | 0.0314 (12) | 0.0329 (12) | 0.0232 (10) | 0.0024 (10) | 0.0083 (9) | 0.0074 (10) |
C21 | 0.0263 (11) | 0.0338 (12) | 0.0171 (9) | 0.0079 (10) | 0.0003 (8) | 0.0018 (9) |
C22 | 0.0178 (9) | 0.0251 (11) | 0.0204 (9) | 0.0018 (8) | 0.0003 (7) | −0.0032 (9) |
O22 | 0.0285 (8) | 0.0389 (9) | 0.0223 (7) | −0.0099 (7) | −0.0060 (6) | 0.0021 (7) |
C1—C2 | 1.399 (3) | C12—C13 | 1.531 (3) |
C1—C6 | 1.406 (3) | C12—H12A | 0.9900 |
C1—C7 | 1.488 (3) | C12—H12B | 0.9900 |
C2—C3 | 1.381 (3) | C13—N15 | 1.475 (2) |
C2—H2 | 0.9500 | C13—C14 | 1.521 (3) |
C3—C4 | 1.394 (3) | C13—H13 | 1.0000 |
C3—H3 | 0.9500 | C14—O14 | 1.425 (2) |
C4—C5 | 1.377 (3) | C14—H14A | 0.9900 |
C4—H4 | 0.9500 | C14—H14B | 0.9900 |
C5—C6 | 1.396 (3) | O14—H14O | 0.846 (18) |
C5—H5 | 0.9500 | N15—C16 | 1.339 (2) |
C6—O6 | 1.353 (2) | N15—H15N | 0.858 (16) |
O6—H6O | 0.882 (17) | C16—O16 | 1.251 (2) |
C7—O7 | 1.259 (2) | C16—C17 | 1.492 (3) |
C7—N8 | 1.341 (3) | C17—C18 | 1.402 (3) |
N8—C9 | 1.462 (3) | C17—C22 | 1.408 (3) |
N8—H8N | 0.874 (16) | C18—C19 | 1.379 (3) |
C9—C10 | 1.532 (3) | C18—H18 | 0.9500 |
C9—H9A | 0.9900 | C19—C20 | 1.391 (3) |
C9—H9B | 0.9900 | C19—H19 | 0.9500 |
C10—C11 | 1.519 (3) | C20—C21 | 1.376 (3) |
C10—H10A | 0.9900 | C20—H20 | 0.9500 |
C10—H10B | 0.9900 | C21—C22 | 1.392 (3) |
C11—C12 | 1.521 (3) | C21—H21 | 0.9500 |
C11—H11A | 0.9900 | C22—O22 | 1.351 (2) |
C11—H11B | 0.9900 | O22—H22O | 0.838 (18) |
C2—C1—C6 | 118.24 (18) | C11—C12—H12A | 109.2 |
C2—C1—C7 | 122.86 (18) | C13—C12—H12A | 109.2 |
C6—C1—C7 | 118.77 (17) | C11—C12—H12B | 109.2 |
C3—C2—C1 | 120.9 (2) | C13—C12—H12B | 109.2 |
C3—C2—H2 | 119.5 | H12A—C12—H12B | 107.9 |
C1—C2—H2 | 119.5 | N15—C13—C14 | 110.40 (17) |
C2—C3—C4 | 119.94 (19) | N15—C13—C12 | 109.94 (15) |
C2—C3—H3 | 120.0 | C14—C13—C12 | 111.31 (15) |
C4—C3—H3 | 120.0 | N15—C13—H13 | 108.4 |
C5—C4—C3 | 120.5 (2) | C14—C13—H13 | 108.4 |
C5—C4—H4 | 119.8 | C12—C13—H13 | 108.4 |
C3—C4—H4 | 119.8 | O14—C14—C13 | 113.51 (15) |
C4—C5—C6 | 119.7 (2) | O14—C14—H14A | 108.9 |
C4—C5—H5 | 120.2 | C13—C14—H14A | 108.9 |
C6—C5—H5 | 120.2 | O14—C14—H14B | 108.9 |
O6—C6—C5 | 117.14 (18) | C13—C14—H14B | 108.9 |
O6—C6—C1 | 122.18 (18) | H14A—C14—H14B | 107.7 |
C5—C6—C1 | 120.67 (18) | C14—O14—H14O | 114.1 (18) |
C6—O6—H6O | 102.2 (17) | C16—N15—C13 | 123.58 (17) |
O7—C7—N8 | 120.36 (18) | C16—N15—H15N | 116.8 (15) |
O7—C7—C1 | 120.57 (18) | C13—N15—H15N | 118.5 (15) |
N8—C7—C1 | 119.04 (17) | O16—C16—N15 | 121.54 (18) |
C7—N8—C9 | 121.54 (18) | O16—C16—C17 | 120.79 (17) |
C7—N8—H8N | 119.3 (16) | N15—C16—C17 | 117.65 (17) |
C9—N8—H8N | 116.1 (16) | C18—C17—C22 | 117.82 (18) |
N8—C9—C10 | 111.17 (18) | C18—C17—C16 | 122.51 (16) |
N8—C9—H9A | 109.4 | C22—C17—C16 | 119.67 (17) |
C10—C9—H9A | 109.4 | C19—C18—C17 | 121.74 (18) |
N8—C9—H9B | 109.4 | C19—C18—H18 | 119.1 |
C10—C9—H9B | 109.4 | C17—C18—H18 | 119.1 |
H9A—C9—H9B | 108.0 | C18—C19—C20 | 119.5 (2) |
C11—C10—C9 | 111.91 (17) | C18—C19—H19 | 120.2 |
C11—C10—H10A | 109.2 | C20—C19—H19 | 120.2 |
C9—C10—H10A | 109.2 | C21—C20—C19 | 120.0 (2) |
C11—C10—H10B | 109.2 | C21—C20—H20 | 120.0 |
C9—C10—H10B | 109.2 | C19—C20—H20 | 120.0 |
H10A—C10—H10B | 107.9 | C20—C21—C22 | 120.90 (18) |
C10—C11—C12 | 114.81 (16) | C20—C21—H21 | 119.5 |
C10—C11—H11A | 108.6 | C22—C21—H21 | 119.5 |
C12—C11—H11A | 108.6 | O22—C22—C21 | 116.52 (17) |
C10—C11—H11B | 108.6 | O22—C22—C17 | 123.48 (18) |
C12—C11—H11B | 108.6 | C21—C22—C17 | 119.97 (19) |
H11A—C11—H11B | 107.5 | C22—O22—H22O | 112.6 (19) |
C11—C12—C13 | 111.96 (16) | ||
C6—C1—C2—C3 | −1.2 (3) | C11—C12—C13—C14 | 173.46 (16) |
C7—C1—C2—C3 | 174.6 (2) | N15—C13—C14—O14 | 58.6 (2) |
C1—C2—C3—C4 | 0.1 (3) | C12—C13—C14—O14 | −178.98 (16) |
C2—C3—C4—C5 | 0.6 (4) | C14—C13—N15—C16 | −131.63 (19) |
C3—C4—C5—C6 | −0.1 (3) | C12—C13—N15—C16 | 105.2 (2) |
C4—C5—C6—O6 | −179.9 (2) | C13—N15—C16—O16 | 4.9 (3) |
C4—C5—C6—C1 | −1.0 (3) | C13—N15—C16—C17 | −176.42 (17) |
C2—C1—C6—O6 | −179.51 (19) | O16—C16—C17—C18 | −161.58 (19) |
C7—C1—C6—O6 | 4.5 (3) | N15—C16—C17—C18 | 19.7 (3) |
C2—C1—C6—C5 | 1.7 (3) | O16—C16—C17—C22 | 17.9 (3) |
C7—C1—C6—C5 | −174.34 (18) | N15—C16—C17—C22 | −160.80 (19) |
C2—C1—C7—O7 | −175.9 (2) | C22—C17—C18—C19 | 1.0 (3) |
C6—C1—C7—O7 | 0.0 (3) | C16—C17—C18—C19 | −179.5 (2) |
C2—C1—C7—N8 | 2.1 (3) | C17—C18—C19—C20 | 0.8 (3) |
C6—C1—C7—N8 | 177.93 (19) | C18—C19—C20—C21 | −1.5 (3) |
O7—C7—N8—C9 | 13.5 (3) | C19—C20—C21—C22 | 0.2 (3) |
C1—C7—N8—C9 | −164.46 (18) | C20—C21—C22—O22 | 179.86 (19) |
C7—N8—C9—C10 | 75.7 (2) | C20—C21—C22—C17 | 1.6 (3) |
N8—C9—C10—C11 | 54.2 (2) | C18—C17—C22—O22 | 179.7 (2) |
C9—C10—C11—C12 | 176.49 (17) | C16—C17—C22—O22 | 0.2 (3) |
C10—C11—C12—C13 | 172.07 (17) | C18—C17—C22—C21 | −2.2 (3) |
C11—C12—C13—N15 | −63.9 (2) | C16—C17—C22—C21 | 178.28 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6O···O7 | 0.88 (2) | 1.70 (2) | 2.530 (2) | 155 (3) |
N8—H8N···O14i | 0.87 (2) | 2.21 (2) | 3.051 (2) | 163 (2) |
O14—H14O···O16ii | 0.85 (2) | 2.03 (2) | 2.858 (2) | 165 (3) |
N15—H15N···O7iii | 0.86 (2) | 2.25 (2) | 3.046 (2) | 154 (2) |
O22—H22O···O16 | 0.84 (2) | 1.95 (2) | 2.648 (2) | 140 (3) |
O22—H22O···O6iv | 0.84 (2) | 2.19 (2) | 2.776 (2) | 127 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1; (iv) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H24N2O5 |
Mr | 372.41 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 123 |
a, b, c (Å) | 9.5934 (7), 9.2266 (7), 10.3565 (7) |
β (°) | 96.172 (4) |
V (Å3) | 911.39 (11) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.26 × 0.21 × 0.04 |
Data collection | |
Diffractometer | Bruker Nonius X8 APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2010) |
Tmin, Tmax | 0.975, 0.996 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10366, 2111, 1943 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.076, 1.05 |
No. of reflections | 2111 |
No. of parameters | 259 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.21, −0.22 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
O6—H6O···O7 | 0.882 (17) | 1.70 (2) | 2.530 (2) | 155 (3) |
N8—H8N···O14i | 0.874 (16) | 2.205 (17) | 3.051 (2) | 163 (2) |
O14—H14O···O16ii | 0.846 (18) | 2.031 (19) | 2.858 (2) | 165 (3) |
N15—H15N···O7iii | 0.858 (16) | 2.254 (17) | 3.046 (2) | 154 (2) |
O22—H22O···O16 | 0.838 (18) | 1.95 (2) | 2.648 (2) | 140 (3) |
O22—H22O···O6iv | 0.838 (18) | 2.19 (2) | 2.776 (2) | 127 (2) |
Symmetry codes: (i) −x, y−1/2, −z+1; (ii) −x, y+1/2, −z+1; (iii) −x+1, y+1/2, −z+1; (iv) x−1, y, z. |
Acknowledgements
The authors thank Dr Volker Huch (Universität des Saarlandes) for the collection of the data set.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Myxochelin A ((S)-N,N'-(6-hydroxyhexane-1,5-diyl)bis(2,3-dihydroxybenzamide)) belongs to the family of siderophores (Kunze et al., 1989) and is well known for its selective complex formation with iron(III). In a neutral medium, metal binding probably occurs via the two catecholate groups (Huang et al., 1995; Duhme et al., 1996). However, myxochelin A also forms stable ferric complexes in an acidic medium around pH 2–3. Under such conditions, a complete deprotonation of all four phenolic hydroxy groups is unfavourable and, alternatively, metal binding may rather occur in a bis-bidentate fashion via the two ortho-hydroxy-benzamide moieties (Cappillino et al., 2009; Stoicescu et al., 2009). For a direct investigation of such a coordination mode, we prepared dideoxy-myxochelin A as a model ligand and report here its crystal structure. The structure elucidation of a related achiral derivative, which is devoid of the hydroxymethyl group, has been reported by Huang et al. (1995).
The crystal structure of the title compound exhibits an all-staggered zigzag arrangement of the O14—C14—C13—C12—C11—C10—C9 chain with corresponding torsional angles of 172–179°. With regard to this chain, the two ortho-hydroxybenzamide moieties adopt a gauche conformation with C—C—C—N torsional angles of 54.2 (2) and -63.9 (2)°. The two phenyl rings are aligned roughly parallel (the angle between the two mean planes is 23°). Inspection of interatomic distances revealed, however, that the interaction between the two aromatic moieties should be interpreted in terms of simple van der Waals contacts rather than π–π stacking. The amide groups and the corresponding phenyl rings are almost, but not fully, coplanar. The angle between the mean planes defined by C1–C6 and N8, C7, O7, C1 or C17–C22 and N15, C16, O16, C17 is 5° or 19°, respectively. Both aromatic hydroxy groups are involved in intramolecular O—H···O(carbonyl) hydrogen bonding, forming a six-membered ring structure which is quite often observed for salicylamides. Additionally, the aliphatic hydroxy group (O14) donates its proton to the carbonyl O atom O16 of a neighbour, and the amide moiety N8—H8N donates its proton to a further aliphatic hydroxy group (O14). The two types of interactions occur along 21 screws and result in the formation of infinite chains, aligned parallel to the crystallographic b axis. Interlinking of these chains occurs via N15—H15N···O7 bonding. In addition, H22O is bifurcated; beside the above-mentioned intramolecular O22—H22O···O16 bond, an intermolecular O22—H22O···O6 bond generates further interlinking along the crystallographic a axis. Altogether, the various types of intermolecular hydrogen bonding interactions resulted in the generation of layers, oriented parallel to the ab plane. Between these layers, only weak van der Waals contacts can be observed.