organic compounds
3,4-Diaminobenzonitrile
aDepartment of Chemistry, State University of New York-College at Geneseo, 1 College Circle, Geneseo, NY 14454, USA
*Correspondence e-mail: geiger@geneseo.edu
The non-H atoms in the structure of the title molecule, C7H7N3, are almost coplanar (r.m.s. deviation = 0.018 Å). The two amine groups each donate two and accept one weak N—H⋯N hydrogen bonds. N—H⋯N hydrogen bonding between the amine and nitrile groups results in chains parallel to [101] in the The chains are cross-linked by N—H⋯N hydrogen bonds between amine groups, giving rise to an infinite three-dimensional network.
Related literature
For the crystal structures of related compounds, see: Czapik & Gdaniec (2010); Stålhandske (1981).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2010); cell SAINT (Bruker, 2010); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XSHELL (Bruker, 2010) and Mercury (Macrae et al., 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536813005151/qk2053sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813005151/qk2053Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813005151/qk2053Isup3.mol
Supporting information file. DOI: 10.1107/S1600536813005151/qk2053Isup4.cml
The compound was obtained commercially (Sigma-Aldrich). Single crystals were grown by slow evaporation of an ethanolic solution.
The H atoms bonded to carbon were refined using a riding model with C—H = 0.95 Å and Uiso = 1.2Ueq(C). The coordinates and isotropic thermal parameters of the amine H atoms were refined freely.
Data collection: APEX2 (Bruker, 2010); cell
SAINT (Bruker, 2010); data reduction: SAINT (Bruker, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: XSHELL (Bruker, 2010) and Mercury (Macrae et al., 2008); software used to prepare material for publication: publCIF (Westrip, 2010).C7H7N3 | F(000) = 280 |
Mr = 133.16 | Dx = 1.294 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 516 reflections |
a = 8.858 (3) Å | θ = 2.6–21.2° |
b = 10.536 (4) Å | µ = 0.08 mm−1 |
c = 8.160 (3) Å | T = 200 K |
β = 116.213 (12)° | Prism, colourless |
V = 683.2 (4) Å3 | 0.50 × 0.20 × 0.10 mm |
Z = 4 |
Bruker SMART X2S CCD diffractometer | 1188 independent reflections |
Radiation source: fine-focus sealed tube | 662 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
Detector resolution: 8.33 pixels mm-1 | θmax = 25.2°, θmin = 3.2° |
ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | k = −12→11 |
Tmin = 0.85, Tmax = 0.99 | l = −5→9 |
2149 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.052 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0526P)2] where P = (Fo2 + 2Fc2)/3 |
1188 reflections | (Δ/σ)max < 0.001 |
107 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C7H7N3 | V = 683.2 (4) Å3 |
Mr = 133.16 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.858 (3) Å | µ = 0.08 mm−1 |
b = 10.536 (4) Å | T = 200 K |
c = 8.160 (3) Å | 0.50 × 0.20 × 0.10 mm |
β = 116.213 (12)° |
Bruker SMART X2S CCD diffractometer | 1188 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2010) | 662 reflections with I > 2σ(I) |
Tmin = 0.85, Tmax = 0.99 | Rint = 0.039 |
2149 measured reflections |
R[F2 > 2σ(F2)] = 0.052 | 0 restraints |
wR(F2) = 0.128 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.96 | Δρmax = 0.18 e Å−3 |
1188 reflections | Δρmin = −0.19 e Å−3 |
107 parameters |
Experimental. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R– factors based on ALL data will be even larger. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 1.0289 (3) | 0.4587 (3) | 0.7729 (3) | 0.0317 (7) | |
H1A | 1.025 (3) | 0.538 (3) | 0.809 (4) | 0.053 (10)* | |
H1B | 1.135 (4) | 0.433 (3) | 0.798 (4) | 0.063 (11)* | |
N3 | 0.3764 (3) | 0.3161 (2) | −0.0415 (3) | 0.0495 (8) | |
N2 | 1.0370 (3) | 0.2330 (2) | 0.5881 (3) | 0.0327 (7) | |
H2A | 1.044 (3) | 0.180 (3) | 0.507 (4) | 0.035 (8)* | |
H2B | 1.142 (4) | 0.264 (3) | 0.670 (4) | 0.068 (11)* | |
C1 | 0.8972 (3) | 0.4302 (2) | 0.6030 (3) | 0.0259 (7) | |
C2 | 0.9008 (3) | 0.3168 (2) | 0.5098 (3) | 0.0253 (7) | |
C3 | 0.7650 (3) | 0.2879 (2) | 0.3464 (3) | 0.0276 (7) | |
H3 | 0.7664 | 0.2122 | 0.2838 | 0.033* | |
C4 | 0.6251 (3) | 0.3686 (3) | 0.2712 (3) | 0.0298 (7) | |
C7 | 0.4877 (3) | 0.3387 (3) | 0.0985 (4) | 0.0366 (8) | |
C5 | 0.6212 (3) | 0.4783 (3) | 0.3641 (3) | 0.0323 (8) | |
H5 | 0.5262 | 0.5329 | 0.3150 | 0.039* | |
C6 | 0.7562 (3) | 0.5071 (3) | 0.5275 (3) | 0.0305 (7) | |
H6 | 0.7525 | 0.5820 | 0.5905 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0325 (16) | 0.0300 (17) | 0.0274 (13) | −0.0019 (12) | 0.0086 (13) | −0.0039 (12) |
N3 | 0.0410 (15) | 0.0481 (18) | 0.0418 (15) | −0.0042 (13) | 0.0022 (14) | 0.0047 (13) |
N2 | 0.0311 (14) | 0.0309 (15) | 0.0300 (13) | 0.0049 (12) | 0.0080 (12) | −0.0032 (12) |
C1 | 0.0271 (15) | 0.0256 (16) | 0.0251 (14) | −0.0025 (12) | 0.0115 (13) | 0.0030 (12) |
C2 | 0.0233 (14) | 0.0259 (16) | 0.0268 (14) | −0.0006 (12) | 0.0111 (13) | 0.0047 (13) |
C3 | 0.0278 (14) | 0.0264 (17) | 0.0258 (14) | −0.0028 (12) | 0.0092 (13) | 0.0008 (12) |
C4 | 0.0237 (14) | 0.0338 (18) | 0.0277 (15) | −0.0037 (13) | 0.0074 (13) | 0.0011 (13) |
C7 | 0.0305 (16) | 0.036 (2) | 0.0387 (17) | 0.0015 (13) | 0.0108 (16) | 0.0062 (14) |
C5 | 0.0272 (15) | 0.0324 (19) | 0.0366 (16) | 0.0020 (13) | 0.0134 (14) | 0.0036 (13) |
C6 | 0.0345 (16) | 0.0252 (16) | 0.0327 (16) | 0.0016 (13) | 0.0156 (14) | −0.0015 (12) |
N1—C1 | 1.395 (3) | C2—C3 | 1.379 (3) |
N1—H1A | 0.89 (3) | C3—C4 | 1.401 (3) |
N1—H1B | 0.91 (3) | C3—H3 | 0.9500 |
N3—C7 | 1.157 (3) | C4—C5 | 1.392 (4) |
N2—C2 | 1.401 (3) | C4—C7 | 1.432 (3) |
N2—H2A | 0.90 (3) | C5—C6 | 1.375 (3) |
N2—H2B | 0.93 (3) | C5—H5 | 0.9500 |
C1—C6 | 1.384 (3) | C6—H6 | 0.9500 |
C1—C2 | 1.424 (3) | ||
C1—N1—H1A | 113.1 (17) | C2—C3—H3 | 119.5 |
C1—N1—H1B | 119 (2) | C4—C3—H3 | 119.5 |
H1A—N1—H1B | 113 (3) | C5—C4—C3 | 119.7 (2) |
C2—N2—H2A | 112.9 (16) | C5—C4—C7 | 120.2 (2) |
C2—N2—H2B | 119 (2) | C3—C4—C7 | 120.0 (2) |
H2A—N2—H2B | 112 (2) | N3—C7—C4 | 179.2 (3) |
C6—C1—N1 | 120.7 (3) | C6—C5—C4 | 119.4 (2) |
C6—C1—C2 | 118.8 (2) | C6—C5—H5 | 120.3 |
N1—C1—C2 | 120.4 (2) | C4—C5—H5 | 120.3 |
C3—C2—N2 | 120.6 (2) | C5—C6—C1 | 122.0 (3) |
C3—C2—C1 | 119.1 (2) | C5—C6—H6 | 119.0 |
N2—C2—C1 | 120.2 (2) | C1—C6—H6 | 119.0 |
C2—C3—C4 | 121.0 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N2i | 0.89 (3) | 2.37 (3) | 3.251 (4) | 168 (3) |
N1—H1B···N3ii | 0.91 (3) | 2.31 (3) | 3.147 (4) | 154 (3) |
N2—H2A···N1iii | 0.90 (3) | 2.36 (3) | 3.246 (4) | 173 (2) |
N2—H2B···N3ii | 0.93 (3) | 2.42 (3) | 3.303 (4) | 159 (3) |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x+1, y, z+1; (iii) x, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C7H7N3 |
Mr | 133.16 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 200 |
a, b, c (Å) | 8.858 (3), 10.536 (4), 8.160 (3) |
β (°) | 116.213 (12) |
V (Å3) | 683.2 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.50 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART X2S CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2010) |
Tmin, Tmax | 0.85, 0.99 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2149, 1188, 662 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.052, 0.128, 0.96 |
No. of reflections | 1188 |
No. of parameters | 107 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.19 |
Computer programs: APEX2 (Bruker, 2010), SAINT (Bruker, 2010), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), XSHELL (Bruker, 2010) and Mercury (Macrae et al., 2008), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N2i | 0.89 (3) | 2.37 (3) | 3.251 (4) | 168 (3) |
N1—H1B···N3ii | 0.91 (3) | 2.31 (3) | 3.147 (4) | 154 (3) |
N2—H2A···N1iii | 0.90 (3) | 2.36 (3) | 3.246 (4) | 173 (2) |
N2—H2B···N3ii | 0.93 (3) | 2.42 (3) | 3.303 (4) | 159 (3) |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x+1, y, z+1; (iii) x, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by a Congressionally directed grant from the US Department of Education (grant No. P116Z100020) for the X-ray diffractometer
References
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Single crystals of the title compound were obtained during its purification by recrystallization for use in the synthesis of an organometallic complex. Figure 1 shows a view of the title molecule with the atom numbering scheme. The non-hydrogen atoms are planar with a r. m. s. deviation of 0.018 Å. The maximum deviation is for C1, which is 0.034 (2) Å out of the plane. The benzene ring is planar with a maximum deviation of 0.008 (2) Å for C4. The amine nitrogens are decidely pyramidal with H-N-H angles of 113 (3)° and 112 (2)° for N1 and N2, respectively. N1 and N2 are 0.056 (4) and 0.073 (4) Å, respectively, below the benzene plane. All four of the hydrogen atoms of the amine groups are on the opposite side of the benzene plane from the amine nitrogen atoms. The nitrile group carbon and nitrogen atoms are 0.046 (4) and 0.086 (5) Å, respectively, out of the benzene plane and are on the opposite side as the amine nitrogens. The nitrile is linear (C4-C7-N = 179.2 (3)°).
There are two known crystalline forms of 1,2-diaminobenzene (Stålhandske, 1981; Czapik & Gdaniec, 2010). In both forms, one of the N-H bonds of each amine group is coplanar with the benzene ring and an intramolecular N-H···N interaction is exhibited. Intermolecular hydrogen bonding results in layers that are joined by additional hydrogen-bonding interactions. The two forms are isostructural in two dimensions, but differ in the stacking of the layers (Czapik & Gdaniec, 2010). Figure 2 shows the hydrogen-bonding network exhibited by the title compound. In contrast to 1,2-diaminobenzene, no intramolecular hydrogen-bonding is observed. Parallel chains of molecules with an interplanar spacing of 3.32Å are formed by hydrogen-bonds involving one hydrogen atom from each of the amines and the nitrile group on adjacent molecules. The chains run parallel to [101] and are crosslinkeded by hydrogen bonds between amine groups.