organic compounds
1-tert-Butyl 2-ethyl 5-chloro-3-(2-furoyl)-1H-indole-1,2-dicarboxylate
aDepartment of Chemistry and Polymer Science, University of Stellenbosch, Private Bag X1, Matieland 7602, South Africa
*Correspondence e-mail: hassam@sun.ac.za
In the title compound, C21H20ClNO6, the furan moiety is located above the mean plane of the indole ring and displays rotational disorder (i.e. rotation through 180°); the site occupancy of the major component is 0.809 (6). In the crystal, C—H⋯O interactions link the molecules into chains which run parallel to the b axis.
Related literature
For background to the use of indoles as scaffolds in the synthesis of HIV-agents, see: Hassam et al. (2012) and for a recent review on stages of non-nucleoside reverse transcriptase inhibitors, see: Reynolds et al. (2012). For the crystal structures of closely related compounds, see: Beddoes et al. (1986), Hassam & Smith (2012, 2013).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: X-SEED.
Supporting information
10.1107/S1600536813005059/zl2535sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813005059/zl2535Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813005059/zl2535Isup3.cml
A catalytic amount of 4-dimethylaminopyridine was added to a solution of ethyl 5-chloro-3-(2-furoyl)-1H-indole-2-carboxylate (1.00 g, 3.14 mmol) in THF (20 ml), followed by the addition of di-tert-butyl dicarbonate (1.10 g, 5.04 mmol). The reaction mixture was then stirred at room temperature for 2 h. The solvent was removed under vacuum and the resulting residue was recrystallized from a hexane/dichloromethane solvent (4:1) to obtain the title compound as a colourless crystalline material (1.14 g, 87%). 1H NMR (300 MHz, CDCl3) δ 8.08 (dd, J = 9.0, 0.5 Hz, 1H), 7.74 (dd, J = 2.1, 0.5 Hz, 1H), 7.65 (dd, J = 1.7, 0.8 Hz, 1H), 7.39 (dd, J = 9.0, 2.1 H, 1H), 7.20 (dd, J = 3.6, 0.8 Hz, 1H), 6.59 (dd, J = 3.6, 1.7 H, 1H), 4.17 (q, J = 7.2 Hz, 2H), 1.63 (s, 9H), 1.15 (t, J = 7.2 Hz, 3H). 13C NMR (75 Hz, CDCl3) 177.17, 161.30, 152.79, 148. 39, 147.33, 134.24, 133.16, 130.17, 127.59, 127.36, 121.28, 120.65, 119.81, 116.35, 112.80, 86.62, 62.43, 27.87, 13.78. HRMS calculated for C21H21ClNO6 [M+H]+, 418.1057 found 418.53.
All non-hydrogen atoms were refined anisotropically. H atoms were placed geometrically [C—H = 0.95 - 0.99 Å; with Uiso(H) = 1.2 - 1.5Ueq(C)] and constrained to ride on their parent atoms. The site-occupancy factors of the disordered thiophene moieties were initially set to 0.5 and then refined, leading to an occupancy of 0.809 (6) and 0.191 (6) for the major and minor components, respectively. Bond lengths for the furan and phenyl moieties were restrained to be similar (s.u. = 0.002 Å). Atom displacement parameters for overlaping atoms of the disordered models were constrained to be each identical.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001; Atwood & Barbour, 2003); software used to prepare material for publication: X-SEED (Barbour, 2001; Atwood & Barbour, 2003).C21H20ClNO6 | F(000) = 872 |
Mr = 417.83 | Dx = 1.389 Mg m−3 |
Monoclinic, P21/c | Melting point: 378(2) K |
Hall symbol: -P 2ybc | Mo Kα radiation, λ = 0.71073 Å |
a = 9.8354 (8) Å | Cell parameters from 5304 reflections |
b = 8.0938 (7) Å | θ = 2.4–27.9° |
c = 25.435 (2) Å | µ = 0.23 mm−1 |
β = 99.344 (1)° | T = 100 K |
V = 1997.9 (3) Å3 | Square block, colourless |
Z = 4 | 0.32 × 0.32 × 0.24 mm |
Bruker APEXII CCD diffractometer | 4483 independent reflections |
Radiation source: fine-focus sealed tube, Bruker SMART Apex | 3877 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ϕ and ω scans | θmax = 28.2°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −12→13 |
Tmin = 0.930, Tmax = 0.947 | k = −10→4 |
11690 measured reflections | l = −31→33 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0359P)2 + 0.8831P] where P = (Fo2 + 2Fc2)/3 |
4483 reflections | (Δ/σ)max = 0.001 |
279 parameters | Δρmax = 0.29 e Å−3 |
8 restraints | Δρmin = −0.38 e Å−3 |
C21H20ClNO6 | V = 1997.9 (3) Å3 |
Mr = 417.83 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.8354 (8) Å | µ = 0.23 mm−1 |
b = 8.0938 (7) Å | T = 100 K |
c = 25.435 (2) Å | 0.32 × 0.32 × 0.24 mm |
β = 99.344 (1)° |
Bruker APEXII CCD diffractometer | 4483 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3877 reflections with I > 2σ(I) |
Tmin = 0.930, Tmax = 0.947 | Rint = 0.019 |
11690 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 8 restraints |
wR(F2) = 0.084 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.29 e Å−3 |
4483 reflections | Δρmin = −0.38 e Å−3 |
279 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl1 | 0.77842 (4) | 0.54454 (4) | −0.051345 (13) | 0.02592 (10) | |
O1 | 0.25661 (9) | 0.04213 (12) | 0.01491 (4) | 0.0207 (2) | |
N1 | 0.45710 (11) | 0.11938 (13) | 0.06875 (4) | 0.0152 (2) | |
C1 | 0.53993 (13) | 0.12814 (16) | 0.11858 (5) | 0.0157 (3) | |
O2 | 0.27094 (9) | 0.06519 (12) | 0.10504 (3) | 0.0189 (2) | |
C2 | 0.51962 (13) | 0.21382 (16) | 0.03288 (5) | 0.0157 (2) | |
O3 | 0.50752 (10) | −0.12594 (12) | 0.16190 (4) | 0.0223 (2) | |
C3 | 0.47829 (14) | 0.24137 (16) | −0.02143 (5) | 0.0190 (3) | |
H3 | 0.3964 | 0.1936 | −0.0403 | 0.023* | |
O4 | 0.51187 (10) | 0.11461 (12) | 0.20738 (3) | 0.0206 (2) | |
C4 | 0.56192 (13) | 0.34160 (16) | −0.04673 (5) | 0.0214 (3) | |
H4 | 0.5379 | 0.3624 | −0.0838 | 0.026* | |
O5 | 0.81234 (10) | 0.13738 (12) | 0.18938 (4) | 0.0221 (2) | |
C5 | 0.68105 (13) | 0.41230 (16) | −0.01829 (5) | 0.0198 (3) | |
C6 | 0.72402 (13) | 0.38397 (15) | 0.03549 (5) | 0.0178 (3) | |
H6 | 0.8068 | 0.4308 | 0.0540 | 0.021* | |
C7 | 0.64034 (12) | 0.28344 (15) | 0.06143 (5) | 0.0160 (3) | |
C8 | 0.65137 (13) | 0.22643 (16) | 0.11585 (5) | 0.0158 (2) | |
C9 | 0.76525 (12) | 0.25249 (16) | 0.16090 (5) | 0.0167 (3) | |
C10 | 0.81371 (13) | 0.42143 (17) | 0.17023 (5) | 0.0177 (3) | |
C14 | 0.51626 (12) | 0.02212 (16) | 0.16433 (5) | 0.0161 (3) | |
C15 | 0.50330 (16) | 0.02643 (19) | 0.25714 (5) | 0.0262 (3) | |
H15A | 0.4507 | −0.0773 | 0.2490 | 0.031* | |
H15B | 0.4537 | 0.0955 | 0.2800 | 0.031* | |
C16 | 0.64444 (18) | −0.0127 (2) | 0.28626 (6) | 0.0386 (4) | |
H16A | 0.6977 | 0.0897 | 0.2930 | 0.058* | |
H16C | 0.6911 | −0.0873 | 0.2646 | 0.058* | |
H16B | 0.6370 | −0.0660 | 0.3203 | 0.058* | |
C17 | 0.31674 (13) | 0.06954 (16) | 0.05885 (5) | 0.0164 (3) | |
C18 | 0.12943 (13) | 0.00596 (17) | 0.10920 (5) | 0.0191 (3) | |
C19 | 0.02392 (14) | 0.12342 (19) | 0.07961 (6) | 0.0266 (3) | |
H19A | 0.0349 | 0.1279 | 0.0420 | 0.040* | |
H19B | 0.0376 | 0.2340 | 0.0953 | 0.040* | |
H19C | −0.0690 | 0.0843 | 0.0824 | 0.040* | |
C20 | 0.13131 (15) | 0.01449 (19) | 0.16902 (6) | 0.0255 (3) | |
H20A | 0.1547 | 0.1270 | 0.1816 | 0.038* | |
H20B | 0.2002 | −0.0629 | 0.1870 | 0.038* | |
H20C | 0.0402 | −0.0151 | 0.1770 | 0.038* | |
C21 | 0.11243 (16) | −0.16979 (18) | 0.08904 (6) | 0.0272 (3) | |
H21A | 0.1883 | −0.2376 | 0.1072 | 0.041* | |
H21C | 0.1133 | −0.1715 | 0.0506 | 0.041* | |
H21B | 0.0246 | −0.2142 | 0.0963 | 0.041* | |
O6A | 0.9318 (4) | 0.4474 (3) | 0.20578 (19) | 0.0224 (4) | 0.809 (6) |
C11A | 0.7582 (4) | 0.5688 (4) | 0.1527 (3) | 0.0194 (6) | 0.809 (6) |
H11A | 0.6773 | 0.5851 | 0.1273 | 0.023* | 0.809 (6) |
C12A | 0.8436 (3) | 0.6940 (4) | 0.17952 (12) | 0.0211 (6) | 0.809 (6) |
H12A | 0.8306 | 0.8101 | 0.1763 | 0.025* | 0.809 (6) |
C13A | 0.9470 (3) | 0.6138 (4) | 0.21058 (12) | 0.0242 (6) | 0.809 (6) |
H13A | 1.0210 | 0.6668 | 0.2329 | 0.029* | 0.809 (6) |
O6B | 0.7353 (13) | 0.5546 (12) | 0.1514 (8) | 0.0194 (6) | 0.191 (6) |
C11B | 0.929 (2) | 0.4726 (19) | 0.2027 (13) | 0.0224 (4) | 0.191 (6) |
H11B | 0.9978 | 0.4049 | 0.2228 | 0.027* | 0.191 (6) |
C12B | 0.9271 (18) | 0.6477 (18) | 0.2006 (6) | 0.0242 (6) | 0.191 (6) |
H12B | 0.9966 | 0.7204 | 0.2175 | 0.029* | 0.191 (6) |
C13B | 0.8072 (14) | 0.691 (2) | 0.1701 (6) | 0.0211 (6) | 0.191 (6) |
H13B | 0.7774 | 0.8017 | 0.1628 | 0.025* | 0.191 (6) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0375 (2) | 0.01775 (17) | 0.02629 (18) | 0.00140 (14) | 0.01670 (14) | 0.00393 (13) |
O1 | 0.0191 (5) | 0.0232 (5) | 0.0189 (5) | −0.0008 (4) | 0.0000 (4) | −0.0042 (4) |
N1 | 0.0155 (5) | 0.0154 (5) | 0.0146 (5) | 0.0006 (4) | 0.0022 (4) | −0.0001 (4) |
C1 | 0.0157 (6) | 0.0156 (6) | 0.0155 (6) | 0.0022 (5) | 0.0014 (4) | −0.0012 (5) |
O2 | 0.0148 (4) | 0.0237 (5) | 0.0185 (4) | −0.0018 (4) | 0.0034 (3) | −0.0016 (4) |
C2 | 0.0172 (6) | 0.0141 (6) | 0.0168 (6) | 0.0033 (5) | 0.0054 (5) | −0.0010 (5) |
O3 | 0.0293 (5) | 0.0167 (5) | 0.0204 (5) | −0.0011 (4) | 0.0027 (4) | 0.0004 (4) |
C3 | 0.0210 (6) | 0.0181 (6) | 0.0174 (6) | 0.0047 (5) | 0.0019 (5) | −0.0017 (5) |
O4 | 0.0288 (5) | 0.0186 (5) | 0.0156 (4) | −0.0014 (4) | 0.0072 (4) | −0.0002 (4) |
C4 | 0.0305 (7) | 0.0195 (7) | 0.0150 (6) | 0.0076 (6) | 0.0061 (5) | 0.0008 (5) |
O5 | 0.0212 (5) | 0.0219 (5) | 0.0219 (5) | 0.0017 (4) | −0.0003 (4) | 0.0036 (4) |
C5 | 0.0266 (7) | 0.0141 (6) | 0.0214 (6) | 0.0045 (5) | 0.0122 (5) | 0.0022 (5) |
C6 | 0.0186 (6) | 0.0150 (6) | 0.0207 (6) | 0.0029 (5) | 0.0061 (5) | 0.0005 (5) |
C7 | 0.0173 (6) | 0.0145 (6) | 0.0165 (6) | 0.0041 (5) | 0.0038 (5) | −0.0001 (5) |
C8 | 0.0160 (6) | 0.0149 (6) | 0.0166 (6) | 0.0016 (5) | 0.0032 (5) | 0.0000 (5) |
C9 | 0.0140 (6) | 0.0208 (7) | 0.0156 (6) | 0.0010 (5) | 0.0039 (5) | 0.0009 (5) |
C10 | 0.0149 (6) | 0.0230 (7) | 0.0152 (6) | −0.0019 (5) | 0.0021 (5) | 0.0004 (5) |
C14 | 0.0130 (6) | 0.0186 (6) | 0.0165 (6) | 0.0001 (5) | 0.0013 (4) | −0.0002 (5) |
C15 | 0.0401 (8) | 0.0247 (7) | 0.0161 (6) | −0.0044 (6) | 0.0112 (6) | 0.0008 (5) |
C16 | 0.0463 (10) | 0.0455 (10) | 0.0211 (7) | −0.0115 (8) | −0.0030 (7) | 0.0079 (7) |
C17 | 0.0149 (6) | 0.0137 (6) | 0.0203 (6) | 0.0021 (5) | 0.0025 (5) | −0.0009 (5) |
C18 | 0.0133 (6) | 0.0207 (7) | 0.0239 (7) | −0.0016 (5) | 0.0051 (5) | −0.0025 (5) |
C19 | 0.0182 (7) | 0.0284 (8) | 0.0327 (8) | 0.0033 (6) | 0.0033 (6) | −0.0008 (6) |
C20 | 0.0216 (7) | 0.0316 (8) | 0.0249 (7) | −0.0040 (6) | 0.0091 (5) | −0.0031 (6) |
C21 | 0.0283 (7) | 0.0214 (7) | 0.0340 (8) | −0.0049 (6) | 0.0114 (6) | −0.0045 (6) |
O6A | 0.0205 (5) | 0.0241 (9) | 0.0202 (8) | −0.0030 (8) | −0.0043 (4) | 0.0034 (10) |
C11A | 0.0118 (14) | 0.0253 (9) | 0.0207 (7) | −0.0007 (9) | 0.0015 (12) | 0.0004 (8) |
C12A | 0.0194 (16) | 0.0205 (7) | 0.0230 (14) | −0.0035 (13) | 0.0019 (11) | 0.0011 (9) |
C13A | 0.0259 (12) | 0.0246 (15) | 0.0199 (14) | −0.0089 (10) | −0.0031 (8) | 0.0012 (9) |
O6B | 0.0118 (14) | 0.0253 (9) | 0.0207 (7) | −0.0007 (9) | 0.0015 (12) | 0.0004 (8) |
C11B | 0.0205 (5) | 0.0241 (9) | 0.0202 (8) | −0.0030 (8) | −0.0043 (4) | 0.0034 (10) |
C12B | 0.0259 (12) | 0.0246 (15) | 0.0199 (14) | −0.0089 (10) | −0.0031 (8) | 0.0012 (9) |
C13B | 0.0194 (16) | 0.0205 (7) | 0.0230 (14) | −0.0035 (13) | 0.0019 (11) | 0.0011 (9) |
Cl1—C5 | 1.7411 (13) | C15—H15A | 0.9900 |
O1—C17 | 1.1973 (15) | C15—H15B | 0.9900 |
N1—C1 | 1.3929 (15) | C16—H16A | 0.9800 |
N1—C2 | 1.4059 (16) | C16—H16C | 0.9800 |
N1—C17 | 1.4209 (16) | C16—H16B | 0.9800 |
C1—C8 | 1.3651 (18) | C18—C21 | 1.5121 (19) |
C1—C14 | 1.4943 (17) | C18—C19 | 1.5145 (19) |
O2—C17 | 1.3253 (15) | C18—C20 | 1.5203 (19) |
O2—C18 | 1.4919 (15) | C19—H19A | 0.9800 |
C2—C3 | 1.3933 (17) | C19—H19B | 0.9800 |
C2—C7 | 1.4053 (17) | C19—H19C | 0.9800 |
O3—C14 | 1.2023 (16) | C20—H20A | 0.9800 |
C3—C4 | 1.3859 (19) | C20—H20B | 0.9800 |
C3—H3 | 0.9500 | C20—H20C | 0.9800 |
O4—C14 | 1.3329 (15) | C21—H21A | 0.9800 |
O4—C15 | 1.4672 (16) | C21—H21C | 0.9800 |
C4—C5 | 1.3959 (14) | C21—H21B | 0.9800 |
C4—H4 | 0.9500 | O6A—C13A | 1.359 (3) |
O5—C9 | 1.2240 (16) | C11A—C12A | 1.418 (3) |
C5—C6 | 1.3836 (13) | C11A—H11A | 0.9500 |
C6—C7 | 1.3968 (13) | C12A—C13A | 1.349 (3) |
C6—H6 | 0.9500 | C12A—H12A | 0.9500 |
C7—C8 | 1.4463 (16) | C13A—H13A | 0.9500 |
C8—C9 | 1.4816 (17) | O6B—C13B | 1.357 (3) |
C9—C10 | 1.4548 (19) | C11B—C12B | 1.418 (4) |
C10—C11A | 1.357 (3) | C11B—H11B | 0.9500 |
C10—C11B | 1.357 (4) | C12B—C13B | 1.348 (3) |
C10—O6B | 1.366 (3) | C12B—H12B | 0.9500 |
C10—O6A | 1.367 (2) | C13B—H13B | 0.9500 |
C15—C16 | 1.497 (2) | ||
C1—N1—C2 | 108.06 (10) | H16A—C16—H16C | 109.5 |
C1—N1—C17 | 125.70 (10) | C15—C16—H16B | 109.5 |
C2—N1—C17 | 123.65 (10) | H16A—C16—H16B | 109.5 |
C8—C1—N1 | 109.83 (11) | H16C—C16—H16B | 109.5 |
C8—C1—C14 | 127.02 (11) | O1—C17—O2 | 129.43 (12) |
N1—C1—C14 | 122.51 (11) | O1—C17—N1 | 122.44 (12) |
C17—O2—C18 | 121.78 (10) | O2—C17—N1 | 108.11 (10) |
C3—C2—C7 | 122.29 (12) | O2—C18—C21 | 109.35 (11) |
C3—C2—N1 | 129.98 (12) | O2—C18—C19 | 109.57 (11) |
C7—C2—N1 | 107.74 (10) | C21—C18—C19 | 113.13 (12) |
C4—C3—C2 | 117.04 (12) | O2—C18—C20 | 101.33 (10) |
C4—C3—H3 | 121.5 | C21—C18—C20 | 111.39 (12) |
C2—C3—H3 | 121.5 | C19—C18—C20 | 111.40 (12) |
C14—O4—C15 | 116.71 (10) | C18—C19—H19A | 109.5 |
C3—C4—C5 | 120.71 (12) | C18—C19—H19B | 109.5 |
C3—C4—H4 | 119.6 | H19A—C19—H19B | 109.5 |
C5—C4—H4 | 119.6 | C18—C19—H19C | 109.5 |
C6—C5—C4 | 122.72 (12) | H19A—C19—H19C | 109.5 |
C6—C5—Cl1 | 118.40 (9) | H19B—C19—H19C | 109.5 |
C4—C5—Cl1 | 118.87 (9) | C18—C20—H20A | 109.5 |
C5—C6—C7 | 117.05 (11) | C18—C20—H20B | 109.5 |
C5—C6—H6 | 121.5 | H20A—C20—H20B | 109.5 |
C7—C6—H6 | 121.5 | C18—C20—H20C | 109.5 |
C6—C7—C2 | 120.18 (11) | H20A—C20—H20C | 109.5 |
C6—C7—C8 | 132.81 (11) | H20B—C20—H20C | 109.5 |
C2—C7—C8 | 107.00 (10) | C18—C21—H21A | 109.5 |
C1—C8—C7 | 107.37 (11) | C18—C21—H21C | 109.5 |
C1—C8—C9 | 123.78 (11) | H21A—C21—H21C | 109.5 |
C7—C8—C9 | 128.65 (11) | C18—C21—H21B | 109.5 |
O5—C9—C10 | 122.45 (11) | H21A—C21—H21B | 109.5 |
O5—C9—C8 | 121.01 (12) | H21C—C21—H21B | 109.5 |
C10—C9—C8 | 116.51 (11) | C13A—O6A—C10 | 106.33 (19) |
C11A—C10—C11B | 100.6 (7) | C10—C11A—C12A | 107.2 (3) |
C11B—C10—O6B | 110.0 (9) | C10—C11A—H11A | 126.4 |
C11A—C10—O6A | 109.6 (2) | C12A—C11A—H11A | 126.4 |
O6B—C10—O6A | 118.8 (7) | C13A—C12A—C11A | 105.6 (3) |
C11A—C10—C9 | 132.0 (2) | C13A—C12A—H12A | 127.2 |
C11B—C10—C9 | 127.3 (7) | C11A—C12A—H12A | 127.2 |
O6B—C10—C9 | 122.2 (6) | C12A—C13A—O6A | 111.3 (3) |
O6A—C10—C9 | 118.21 (14) | C12A—C13A—H13A | 124.4 |
O3—C14—O4 | 126.20 (12) | O6A—C13A—H13A | 124.4 |
O3—C14—C1 | 123.44 (12) | C13B—O6B—C10 | 106.7 (13) |
O4—C14—C1 | 110.32 (11) | C10—C11B—C12B | 106.0 (11) |
O4—C15—C16 | 110.56 (12) | C10—C11B—H11B | 127.0 |
O4—C15—H15A | 109.5 | C12B—C11B—H11B | 127.0 |
C16—C15—H15A | 109.5 | C13B—C12B—C11B | 106.8 (15) |
O4—C15—H15B | 109.5 | C13B—C12B—H12B | 126.6 |
C16—C15—H15B | 109.5 | C11B—C12B—H12B | 126.6 |
H15A—C15—H15B | 108.1 | C12B—C13B—O6B | 110.3 (17) |
C15—C16—H16A | 109.5 | C12B—C13B—H13B | 124.9 |
C15—C16—H16C | 109.5 | O6B—C13B—H13B | 124.9 |
C2—N1—C1—C8 | 0.90 (14) | C8—C9—C10—O6A | −170.0 (3) |
C17—N1—C1—C8 | −161.26 (11) | C15—O4—C14—O3 | 3.66 (19) |
C2—N1—C1—C14 | −170.51 (11) | C15—O4—C14—C1 | −173.96 (11) |
C17—N1—C1—C14 | 27.33 (19) | C8—C1—C14—O3 | −116.54 (15) |
C1—N1—C2—C3 | 178.85 (13) | N1—C1—C14—O3 | 53.33 (18) |
C17—N1—C2—C3 | −18.5 (2) | C8—C1—C14—O4 | 61.16 (17) |
C1—N1—C2—C7 | −1.16 (13) | N1—C1—C14—O4 | −128.97 (12) |
C17—N1—C2—C7 | 161.45 (11) | C14—O4—C15—C16 | 88.55 (15) |
C7—C2—C3—C4 | 0.00 (19) | C18—O2—C17—O1 | 6.0 (2) |
N1—C2—C3—C4 | 179.99 (12) | C18—O2—C17—N1 | −175.66 (10) |
C2—C3—C4—C5 | −0.72 (19) | C1—N1—C17—O1 | −169.19 (12) |
C3—C4—C5—C6 | 1.7 (2) | C2—N1—C17—O1 | 31.29 (19) |
C3—C4—C5—Cl1 | −177.20 (10) | C1—N1—C17—O2 | 12.35 (17) |
C4—C5—C6—C7 | −1.74 (19) | C2—N1—C17—O2 | −147.17 (11) |
Cl1—C5—C6—C7 | 177.11 (9) | C17—O2—C18—C21 | 58.82 (15) |
C5—C6—C7—C2 | 0.99 (18) | C17—O2—C18—C19 | −65.71 (15) |
C5—C6—C7—C8 | 179.53 (13) | C17—O2—C18—C20 | 176.51 (11) |
C3—C2—C7—C6 | −0.15 (19) | C11A—C10—O6A—C13A | 0.9 (6) |
N1—C2—C7—C6 | 179.86 (11) | C11B—C10—O6A—C13A | 14 (13) |
C3—C2—C7—C8 | −179.03 (12) | O6B—C10—O6A—C13A | −4.8 (11) |
N1—C2—C7—C8 | 0.98 (13) | C9—C10—O6A—C13A | −174.7 (3) |
N1—C1—C8—C7 | −0.28 (14) | C11B—C10—C11A—C12A | −3.5 (19) |
C14—C1—C8—C7 | 170.64 (12) | O6B—C10—C11A—C12A | 150 (7) |
N1—C1—C8—C9 | −175.47 (11) | O6A—C10—C11A—C12A | −1.5 (6) |
C14—C1—C8—C9 | −4.5 (2) | C9—C10—C11A—C12A | 173.4 (2) |
C6—C7—C8—C1 | −179.12 (13) | C10—C11A—C12A—C13A | 1.4 (5) |
C2—C7—C8—C1 | −0.44 (14) | C11A—C12A—C13A—O6A | −0.8 (5) |
C6—C7—C8—C9 | −4.2 (2) | C10—O6A—C13A—C12A | 0.0 (5) |
C2—C7—C8—C9 | 174.43 (12) | C11A—C10—O6B—C13B | −24 (5) |
C1—C8—C9—O5 | 41.90 (19) | C11B—C10—O6B—C13B | 3 (3) |
C7—C8—C9—O5 | −132.21 (14) | O6A—C10—O6B—C13B | 6.5 (19) |
C1—C8—C9—C10 | −136.08 (13) | C9—C10—O6B—C13B | 176.0 (10) |
C7—C8—C9—C10 | 49.81 (18) | C11A—C10—C11B—C12B | 0 (3) |
O5—C9—C10—C11A | −162.5 (4) | O6B—C10—C11B—C12B | −5 (3) |
C8—C9—C10—C11A | 15.5 (4) | O6A—C10—C11B—C12B | −167 (15) |
O5—C9—C10—C11B | 14 (2) | C9—C10—C11B—C12B | −176.6 (12) |
C8—C9—C10—C11B | −168 (2) | C10—C11B—C12B—C13B | 4 (3) |
O5—C9—C10—O6B | −157.6 (11) | C11B—C12B—C13B—O6B | −2 (3) |
C8—C9—C10—O6B | 20.4 (11) | C10—O6B—C13B—C12B | −1 (2) |
O5—C9—C10—O6A | 12.0 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
C3—H3···O1 | 0.95 | 2.45 | 2.9774 (16) | 115 |
C13A—H13A···O5i | 0.95 | 2.37 | 3.187 (3) | 144 |
C19—H19A···O1 | 0.98 | 2.49 | 3.0985 (17) | 120 |
C21—H21C···O1 | 0.98 | 2.49 | 3.0615 (17) | 117 |
Symmetry code: (i) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H20ClNO6 |
Mr | 417.83 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 9.8354 (8), 8.0938 (7), 25.435 (2) |
β (°) | 99.344 (1) |
V (Å3) | 1997.9 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.32 × 0.32 × 0.24 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.930, 0.947 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11690, 4483, 3877 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.664 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.084, 1.05 |
No. of reflections | 4483 |
No. of parameters | 279 |
No. of restraints | 8 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.38 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001; Atwood & Barbour, 2003).
D—H···A | D—H | H···A | D···A | D—H···A |
C13A—H13A···O5i | 0.95 | 2.37 | 3.187 (3) | 144 |
Symmetry code: (i) −x+2, y+1/2, −z+1/2. |
Acknowledgements
MH thanks Professor Willem A. L. van Otterlo and Dr S. C. Pelly for their valuable input and research oversight. Stellenbosch University's Science Faculty is also acknowledged for providing laboratory space and financial research support (Subcommittee B). The South African National Research Foundation (NRF), Pretoria, is also acknowledged for providing research funds.
References
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Ethyl-5-chloro-1H-indole-2-carboxylate has been employed as a building block in the synthesis of various anti-HIV active molecules particularly in the search for novel non-nucleoside reverse transcriptase inhibitors (Hassam et al. 2012, Reynolds et al. 2012). Protection on the indole NH of ethyl 5-chloro-3-(2-furoyl)-1H-indole-2-carboxylate was carried out with di-tert-butyl-dicarbonate using 4-dimethylaminopyridine as a catalytic base.
The title compound, C21H20ClNO6, crystallizes with one molecule in the asymmetric unit (Fig. 1). The furan group is disordered over two positions with major (A) and minor (B) components in a 0.809 (6):0.191 (6) ratio. The dihedral angles between the mean planes of the 5-chloro indole ring (Cl1/N1/C1—C8) and the disordered furan rings (O6A/C10/C11A/C13A and O6B/C10/C11B/C13B) are 58.01 (13)° and 59.70 (68)°, respectively. The angles between the mean planes of the indole ring and the N-tert-butyloxy, ethyl ester and the ketone groups are 26.90 (04)°, 55.71 (04)° and 46.18 (05)°, respectively. The torsion angles of O5/C9/C10/O6A and O5/C9/C10/O6B are 12.1 (3)° and -157.5 (1)°, respectively, thereby describing the major component in a cis conformation and the minor component in a trans conformation. Molecular packing shows the molecules being connected via weak C13A—H13A···O5 intermolecular interactions that link molecules into chains which run parallel to the b axis (Fig. 2, Table 1).