organic compounds
A new polymorph of 1,3-bis(pentafluorophenyl)urea
aDepartment of Material Science and Chemistry, Wakayama University, Sakaedani, Wakayama, 640-8510, Japan
*Correspondence e-mail: okuno@center.wakayama-u.ac.jp
The title compound, C13H2F10N2O, has been previously described in the Pbca with Z = 8 [Jai-nhuknan et al. (1997). Acta Cryst. C53, 455–457]. The current P212121 polymorph was obtained from a tetrahydrofuran solution. The pentafluorophenyl rings make dihedral angles of 50.35 (6) and 54.94 (6)° with the urea fragment, in close accord with those reported for the first polymorph. In the crystal, both of the N—H groups donate H atoms to the same carbonyl O atom, forming a one-dimensional molecular array along the a axis. There are close contacts between perfluorophenyl C atoms within the array [3.228 (3) Å] and halogen bonds are also observed between the arrays [F⋯F = 2.709 (2) and 2.7323 (18) Å].
Related literature
For the structure of the first reported ploymorph, see: Jai-nhuknan et al. (1997). For the related structure of 1,3-diphenylurea, see: Dannecker et al. (1979). For background to organofluorine chemistry, see: Chambers (2004).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2008); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR92 (Altomare, et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).
Supporting information
10.1107/S1600536813007836/ff2101sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813007836/ff2101Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813007836/ff2101Isup3.cml
The title compound was commercially purchased and recrystallized from a tetrahydrofuran solution.
Friedel pairs were merged because the molecule itself was achiral and because there were not any
effects. The N-bound H atom was obtained from a difference Fourier map and was refined isotropically with the restriction of N—H range between 0.85 Å and 0.89 Å. Uiso(H) values of the H atoms were set at 1.2Ueq(parent atom).Data collection: CrystalClear (Rigaku, 2008); cell
CrystalClear (Rigaku, 2008); data reduction: CrystalClear (Rigaku, 2008); program(s) used to solve structure: SIR92 (Altomare, et al., 1994); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).C13H2F10N2O | F(000) = 768.00 |
Mr = 392.16 | Dx = 2.046 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 4650 reflections |
a = 4.5798 (7) Å | θ = 2.3–31.2° |
b = 9.5411 (16) Å | µ = 0.23 mm−1 |
c = 29.136 (5) Å | T = 93 K |
V = 1273.1 (4) Å3 | Platelet, colorless |
Z = 4 | 0.15 × 0.15 × 0.03 mm |
Rigaku Saturn724+ diffractometer | 1941 reflections with F2 > 2σ(F2) |
Detector resolution: 28.445 pixels mm-1 | Rint = 0.023 |
ω scans | θmax = 29.0° |
Absorption correction: numerical (NUMABS; Rigaku, 1999) | h = −6→5 |
Tmin = 0.978, Tmax = 0.993 | k = −12→13 |
10307 measured reflections | l = −39→37 |
1993 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.080 | Only H-atom coordinates refined |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0393P)2 + 0.6807P] where P = (Fo2 + 2Fc2)/3 |
1991 reflections | (Δ/σ)max < 0.001 |
241 parameters | Δρmax = 0.34 e Å−3 |
2 restraints | Δρmin = −0.20 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C13H2F10N2O | V = 1273.1 (4) Å3 |
Mr = 392.16 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 4.5798 (7) Å | µ = 0.23 mm−1 |
b = 9.5411 (16) Å | T = 93 K |
c = 29.136 (5) Å | 0.15 × 0.15 × 0.03 mm |
Rigaku Saturn724+ diffractometer | 1993 independent reflections |
Absorption correction: numerical (NUMABS; Rigaku, 1999) | 1941 reflections with F2 > 2σ(F2) |
Tmin = 0.978, Tmax = 0.993 | Rint = 0.023 |
10307 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 2 restraints |
wR(F2) = 0.080 | Only H-atom coordinates refined |
S = 1.09 | Δρmax = 0.34 e Å−3 |
1991 reflections | Δρmin = −0.20 e Å−3 |
241 parameters |
Geometry. ENTER SPECIAL DETAILS OF THE MOLECULAR GEOMETRY |
Refinement. Refinement was performed using all reflections except for two with very negative F2. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
F1 | 1.1418 (3) | 0.61873 (13) | 0.20307 (4) | 0.0201 (3) | |
F2 | 0.9729 (3) | 0.60115 (14) | 0.11485 (4) | 0.0230 (3) | |
F3 | 0.5296 (4) | 0.42251 (14) | 0.09057 (4) | 0.0261 (3) | |
F4 | 0.2849 (3) | 0.25518 (13) | 0.15527 (4) | 0.0235 (3) | |
F5 | 0.4741 (3) | 0.26032 (12) | 0.24218 (4) | 0.0199 (3) | |
F6 | 1.1205 (3) | 0.65289 (13) | 0.41004 (4) | 0.0209 (3) | |
F7 | 0.9048 (4) | 0.66890 (14) | 0.49612 (4) | 0.0269 (3) | |
F8 | 0.4722 (4) | 0.49024 (15) | 0.52340 (4) | 0.0286 (3) | |
F9 | 0.2803 (3) | 0.28817 (15) | 0.46530 (4) | 0.0261 (3) | |
F10 | 0.5071 (3) | 0.26629 (12) | 0.38011 (4) | 0.0213 (3) | |
O1 | 0.4972 (3) | 0.46701 (15) | 0.30935 (5) | 0.0163 (3) | |
N1 | 0.9286 (4) | 0.4477 (2) | 0.27009 (5) | 0.0154 (3) | |
N2 | 0.9324 (4) | 0.45284 (19) | 0.34806 (5) | 0.0149 (3) | |
C1 | 0.8112 (5) | 0.4427 (2) | 0.22555 (6) | 0.0143 (4) | |
C2 | 0.9298 (5) | 0.5288 (2) | 0.19172 (6) | 0.0156 (4) | |
C3 | 0.8433 (5) | 0.5207 (2) | 0.14616 (6) | 0.0172 (4) | |
C4 | 0.6225 (5) | 0.4295 (3) | 0.13398 (6) | 0.0180 (4) | |
C5 | 0.4991 (5) | 0.3442 (2) | 0.16699 (6) | 0.0170 (4) | |
C6 | 0.5947 (5) | 0.3492 (2) | 0.21201 (6) | 0.0150 (4) | |
C7 | 0.8117 (4) | 0.4624 (2) | 0.39231 (6) | 0.0141 (4) | |
C8 | 0.9103 (5) | 0.5630 (2) | 0.42307 (6) | 0.0155 (4) | |
C9 | 0.8013 (5) | 0.5723 (2) | 0.46721 (6) | 0.0181 (4) | |
C10 | 0.5852 (5) | 0.4809 (3) | 0.48127 (6) | 0.0196 (4) | |
C11 | 0.4853 (5) | 0.3785 (2) | 0.45158 (6) | 0.0184 (4) | |
C12 | 0.6005 (5) | 0.3694 (2) | 0.40767 (6) | 0.0158 (4) | |
C13 | 0.7652 (5) | 0.4563 (2) | 0.30915 (6) | 0.0139 (4) | |
H1 | 1.117 (4) | 0.451 (3) | 0.2722 (9) | 0.0184* | |
H2 | 1.123 (4) | 0.459 (3) | 0.3452 (9) | 0.0179* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.0170 (6) | 0.0229 (6) | 0.0204 (6) | −0.0048 (5) | −0.0003 (5) | −0.0012 (5) |
F2 | 0.0234 (6) | 0.0297 (6) | 0.0158 (5) | 0.0024 (6) | 0.0033 (5) | 0.0049 (5) |
F3 | 0.0296 (7) | 0.0353 (7) | 0.0135 (5) | 0.0054 (7) | −0.0075 (6) | −0.0045 (5) |
F4 | 0.0220 (6) | 0.0210 (6) | 0.0276 (6) | −0.0030 (6) | −0.0094 (6) | −0.0061 (5) |
F5 | 0.0200 (6) | 0.0195 (6) | 0.0202 (6) | −0.0027 (6) | −0.0016 (5) | 0.0030 (5) |
F6 | 0.0185 (6) | 0.0226 (6) | 0.0215 (6) | −0.0072 (6) | −0.0018 (5) | 0.0029 (5) |
F7 | 0.0326 (8) | 0.0299 (7) | 0.0181 (5) | −0.0002 (7) | −0.0049 (6) | −0.0073 (5) |
F8 | 0.0303 (7) | 0.0426 (8) | 0.0129 (5) | 0.0047 (7) | 0.0060 (6) | 0.0026 (5) |
F9 | 0.0201 (6) | 0.0324 (7) | 0.0259 (6) | −0.0066 (6) | 0.0043 (6) | 0.0104 (6) |
F10 | 0.0221 (6) | 0.0197 (6) | 0.0221 (6) | −0.0056 (6) | −0.0011 (5) | −0.0017 (5) |
O1 | 0.0100 (6) | 0.0234 (7) | 0.0154 (6) | −0.0001 (6) | −0.0011 (6) | 0.0006 (6) |
N1 | 0.0097 (7) | 0.0242 (8) | 0.0122 (7) | 0.0003 (7) | −0.0006 (6) | −0.0007 (6) |
N2 | 0.0094 (7) | 0.0237 (8) | 0.0117 (7) | 0.0000 (7) | −0.0004 (6) | 0.0004 (6) |
C1 | 0.0126 (8) | 0.0174 (8) | 0.0129 (8) | 0.0016 (8) | −0.0009 (7) | −0.0011 (7) |
C2 | 0.0134 (8) | 0.0178 (8) | 0.0155 (8) | 0.0009 (7) | −0.0004 (7) | −0.0017 (7) |
C3 | 0.0180 (9) | 0.0202 (9) | 0.0135 (8) | 0.0046 (8) | 0.0014 (7) | 0.0013 (7) |
C4 | 0.0193 (9) | 0.0230 (9) | 0.0116 (8) | 0.0063 (9) | −0.0036 (8) | −0.0040 (7) |
C5 | 0.0159 (9) | 0.0165 (8) | 0.0186 (8) | 0.0001 (8) | −0.0051 (8) | −0.0043 (7) |
C6 | 0.0136 (8) | 0.0163 (8) | 0.0152 (8) | 0.0015 (8) | −0.0007 (7) | −0.0010 (7) |
C7 | 0.0111 (8) | 0.0184 (9) | 0.0127 (8) | 0.0013 (8) | −0.0003 (7) | 0.0026 (7) |
C8 | 0.0134 (8) | 0.0180 (8) | 0.0151 (8) | −0.0005 (8) | −0.0008 (7) | 0.0026 (7) |
C9 | 0.0197 (9) | 0.0200 (9) | 0.0147 (8) | 0.0027 (8) | −0.0029 (8) | −0.0017 (7) |
C10 | 0.0190 (9) | 0.0277 (10) | 0.0122 (8) | 0.0060 (9) | 0.0015 (7) | 0.0032 (7) |
C11 | 0.0141 (8) | 0.0224 (9) | 0.0188 (8) | 0.0003 (8) | 0.0015 (8) | 0.0081 (7) |
C12 | 0.0139 (8) | 0.0172 (8) | 0.0162 (8) | 0.0003 (8) | −0.0012 (7) | 0.0010 (7) |
C13 | 0.0141 (8) | 0.0150 (8) | 0.0126 (8) | −0.0006 (7) | −0.0003 (7) | 0.0000 (7) |
F1—C2 | 1.337 (3) | C1—C2 | 1.393 (3) |
F2—C3 | 1.332 (3) | C1—C6 | 1.391 (3) |
F3—C4 | 1.336 (3) | C2—C3 | 1.387 (3) |
F4—C5 | 1.342 (3) | C3—C4 | 1.380 (3) |
F5—C6 | 1.340 (3) | C4—C5 | 1.381 (3) |
F6—C8 | 1.344 (3) | C5—C6 | 1.384 (3) |
F7—C9 | 1.336 (3) | C7—C8 | 1.389 (3) |
F8—C10 | 1.335 (3) | C7—C12 | 1.387 (3) |
F9—C11 | 1.336 (3) | C8—C9 | 1.382 (3) |
F10—C12 | 1.340 (3) | C9—C10 | 1.381 (3) |
O1—C13 | 1.232 (3) | C10—C11 | 1.383 (3) |
N1—C1 | 1.405 (3) | C11—C12 | 1.387 (3) |
N1—C13 | 1.364 (3) | N1—H1 | 0.864 (18) |
N2—C7 | 1.406 (3) | N2—H2 | 0.879 (18) |
N2—C13 | 1.368 (3) | ||
F1···F2 | 2.6895 (18) | F9···C11xiv | 3.197 (3) |
F1···N1 | 2.725 (2) | F10···F1vi | 3.2313 (18) |
F2···F3 | 2.744 (2) | F10···F2viii | 2.709 (2) |
F3···F4 | 2.7126 (18) | F10···F2vi | 2.859 (2) |
F4···F5 | 2.6767 (18) | F10···F3viii | 3.3936 (19) |
F5···O1 | 2.7803 (19) | F10···N2v | 3.312 (3) |
F5···N1 | 2.862 (3) | F10···C3viii | 2.942 (3) |
F5···C13 | 3.014 (3) | F10···C4viii | 3.293 (3) |
F6···F7 | 2.6999 (18) | O1···F4i | 3.101 (2) |
F6···N2 | 2.765 (2) | O1···F5i | 3.1785 (19) |
F7···F8 | 2.732 (2) | O1···N1v | 2.850 (3) |
F8···F9 | 2.712 (2) | O1···N2v | 2.825 (3) |
F9···F10 | 2.6989 (18) | O1···C13v | 3.354 (3) |
F10···O1 | 2.8143 (19) | N1···F1vi | 3.251 (3) |
F10···N2 | 2.799 (3) | N1···F5iii | 3.178 (3) |
F10···C13 | 2.993 (3) | N1···F5i | 3.525 (3) |
O1···C1 | 2.843 (3) | N1···O1iii | 2.850 (3) |
O1···C6 | 3.083 (3) | N2···F1vi | 3.535 (3) |
O1···C7 | 2.814 (3) | N2···F2vi | 3.552 (3) |
O1···C12 | 3.049 (3) | N2···F4i | 3.053 (3) |
C1···C4 | 2.807 (3) | N2···F10iii | 3.312 (3) |
C2···C5 | 2.741 (3) | N2···O1iii | 2.825 (3) |
C2···C13 | 3.571 (3) | C1···F1v | 3.557 (3) |
C3···C6 | 2.767 (3) | C1···F4iii | 3.478 (3) |
C6···C13 | 3.109 (3) | C1···F5iii | 3.532 (3) |
C7···C10 | 2.797 (3) | C1···F5i | 3.432 (3) |
C8···C11 | 2.753 (3) | C2···F4iii | 3.254 (3) |
C8···C13 | 3.535 (3) | C2···F5i | 3.466 (3) |
C9···C12 | 2.757 (3) | C2···C5iii | 3.228 (3) |
C12···C13 | 3.082 (3) | C2···C6iii | 3.544 (3) |
F1···F5i | 3.5106 (18) | C3···F4iii | 3.252 (3) |
F1···F5ii | 2.7323 (18) | C3···F10i | 2.942 (3) |
F1···F10ii | 3.2313 (18) | C3···C5iii | 3.496 (3) |
F1···N1ii | 3.251 (3) | C4···F1v | 3.487 (3) |
F1···N2ii | 3.535 (3) | C4···F2v | 3.441 (3) |
F1···C1iii | 3.557 (3) | C4···F4iii | 3.515 (3) |
F1···C4iii | 3.487 (3) | C4···F6vi | 3.162 (3) |
F1···C5iii | 3.263 (3) | C4···F10i | 3.293 (3) |
F1···C6iii | 3.315 (3) | C5···F1v | 3.263 (3) |
F1···C6ii | 3.523 (3) | C5···F6vi | 3.377 (3) |
F1···C13ii | 3.269 (3) | C5···C2v | 3.228 (3) |
F2···F3iii | 3.147 (2) | C5···C3v | 3.496 (3) |
F2···F8iv | 2.8148 (18) | C6···F1v | 3.315 (3) |
F2···F9i | 3.1594 (19) | C6···F1vi | 3.523 (3) |
F2···F10i | 2.709 (2) | C6···C2v | 3.544 (3) |
F2···F10ii | 2.859 (2) | C7···F2vi | 3.591 (3) |
F2···N2ii | 3.552 (3) | C7···F4i | 3.150 (3) |
F2···C4iii | 3.441 (3) | C7···F9iii | 3.448 (3) |
F2···C7ii | 3.591 (3) | C8···F4i | 3.061 (3) |
F2···C12ii | 3.286 (3) | C8···F9iii | 3.356 (3) |
F3···F2v | 3.147 (2) | C8···C11iii | 3.275 (3) |
F3···F6vi | 3.0309 (19) | C9···F7xi | 3.246 (3) |
F3···F7iv | 2.9024 (18) | C9···F8iii | 3.568 (3) |
F3···F8vii | 3.131 (2) | C9···F9iii | 3.487 (3) |
F3···F8iv | 3.119 (2) | C10···F6v | 3.395 (3) |
F3···F10i | 3.3936 (19) | C10···F7xi | 3.504 (3) |
F4···F6viii | 2.8319 (18) | C10···F9xiii | 3.133 (3) |
F4···F6vi | 3.4627 (19) | C11···F6v | 3.333 (3) |
F4···O1viii | 3.101 (2) | C11···F9xiii | 3.197 (3) |
F4···N2viii | 3.053 (3) | C11···C8v | 3.275 (3) |
F4···C1v | 3.478 (3) | C12···F2vi | 3.286 (3) |
F4···C2v | 3.254 (3) | C12···F6v | 3.486 (3) |
F4···C3v | 3.252 (3) | C13···F1vi | 3.269 (3) |
F4···C4v | 3.515 (3) | C13···F4i | 3.043 (3) |
F4···C7viii | 3.150 (3) | C13···F5i | 3.442 (3) |
F4···C8viii | 3.061 (3) | C13···O1iii | 3.354 (3) |
F4···C13viii | 3.043 (3) | F1···H1 | 2.58 (3) |
F5···F1viii | 3.5106 (18) | F5···H1 | 3.57 (2) |
F5···F1vi | 2.7323 (18) | F6···H2 | 2.64 (3) |
F5···O1viii | 3.1785 (19) | F10···H2 | 3.52 (3) |
F5···N1v | 3.178 (3) | O1···H1 | 3.040 (19) |
F5···N1viii | 3.525 (3) | O1···H2 | 3.052 (19) |
F5···C1v | 3.532 (3) | N1···H2 | 2.37 (3) |
F5···C1viii | 3.432 (3) | N2···H1 | 2.37 (3) |
F5···C2viii | 3.466 (3) | C2···H1 | 2.61 (3) |
F5···C13viii | 3.442 (3) | C6···H1 | 3.12 (3) |
F6···F3ii | 3.0309 (19) | C8···H2 | 2.66 (3) |
F6···F4i | 2.8319 (18) | C12···H2 | 3.13 (3) |
F6···F4ii | 3.4627 (19) | H1···H2 | 2.13 (4) |
F6···F7ix | 3.4730 (18) | F1···H1ii | 3.46 (3) |
F6···C4ii | 3.162 (3) | F4···H2viii | 3.39 (3) |
F6···C5ii | 3.377 (3) | F5···H1v | 2.60 (3) |
F6···C10iii | 3.395 (3) | F5···H1vi | 3.52 (3) |
F6···C11iii | 3.333 (3) | F10···H2v | 2.74 (3) |
F6···C12iii | 3.486 (3) | O1···H1v | 2.06 (2) |
F7···F3x | 2.9024 (18) | O1···H2v | 2.01 (2) |
F7···F6xi | 3.4730 (18) | C1···H1v | 3.460 (19) |
F7···F7xi | 2.773 (2) | C6···H1v | 2.97 (3) |
F7···F7ix | 2.773 (2) | C7···H2v | 3.44 (2) |
F7···F8iii | 3.208 (3) | C11···H2v | 3.60 (3) |
F7···F8ix | 3.316 (2) | C12···H2v | 2.97 (3) |
F7···C9ix | 3.246 (3) | C13···H1v | 3.160 (19) |
F7···C10ix | 3.504 (3) | C13···H2v | 3.123 (19) |
F8···F2x | 2.8148 (18) | H1···F1vi | 3.46 (3) |
F8···F3xii | 3.131 (2) | H1···F5iii | 2.60 (3) |
F8···F3x | 3.119 (2) | H1···F5ii | 3.52 (3) |
F8···F7v | 3.208 (3) | H1···O1iii | 2.06 (2) |
F8···F7xi | 3.316 (2) | H1···C1iii | 3.460 (19) |
F8···F9xiii | 3.026 (2) | H1···C6iii | 2.97 (3) |
F8···C9v | 3.568 (3) | H1···C13iii | 3.160 (19) |
F9···F2viii | 3.1594 (19) | H2···F4i | 3.39 (3) |
F9···F8xiv | 3.026 (2) | H2···F10iii | 2.74 (3) |
F9···F9xiv | 3.1405 (19) | H2···O1iii | 2.01 (2) |
F9···F9xiii | 3.1405 (19) | H2···C7iii | 3.44 (2) |
F9···C7v | 3.448 (3) | H2···C11iii | 3.60 (3) |
F9···C8v | 3.356 (3) | H2···C12iii | 2.97 (3) |
F9···C9v | 3.487 (3) | H2···C13iii | 3.123 (19) |
F9···C10xiv | 3.133 (3) | ||
C1—N1—C13 | 124.23 (17) | F6—C8—C7 | 119.45 (16) |
C7—N2—C13 | 122.57 (16) | F6—C8—C9 | 118.75 (17) |
N1—C1—C2 | 118.94 (18) | C7—C8—C9 | 121.79 (19) |
N1—C1—C6 | 123.82 (17) | F7—C9—C8 | 120.16 (19) |
C2—C1—C6 | 117.09 (17) | F7—C9—C10 | 120.19 (17) |
F1—C2—C1 | 119.10 (16) | C8—C9—C10 | 119.65 (18) |
F1—C2—C3 | 118.66 (17) | F8—C10—C9 | 120.58 (18) |
C1—C2—C3 | 122.19 (18) | F8—C10—C11 | 119.58 (19) |
F2—C3—C2 | 119.74 (18) | C9—C10—C11 | 119.84 (17) |
F2—C3—C4 | 120.90 (16) | F9—C11—C10 | 120.09 (17) |
C2—C3—C4 | 119.36 (18) | F9—C11—C12 | 120.21 (17) |
F3—C4—C3 | 120.55 (18) | C10—C11—C12 | 119.70 (19) |
F3—C4—C5 | 119.96 (19) | F10—C12—C7 | 119.93 (16) |
C3—C4—C5 | 119.49 (17) | F10—C12—C11 | 118.52 (18) |
F4—C5—C4 | 119.68 (17) | C7—C12—C11 | 121.54 (18) |
F4—C5—C6 | 119.63 (17) | O1—C13—N1 | 123.73 (17) |
C4—C5—C6 | 120.70 (19) | O1—C13—N2 | 123.75 (17) |
F5—C6—C1 | 120.90 (16) | N1—C13—N2 | 112.52 (17) |
F5—C6—C5 | 118.00 (17) | C1—N1—H1 | 116.7 (17) |
C1—C6—C5 | 121.09 (18) | C13—N1—H1 | 119.0 (17) |
N2—C7—C8 | 120.58 (17) | C7—N2—H2 | 118.2 (17) |
N2—C7—C12 | 121.92 (17) | C13—N2—H2 | 118.4 (17) |
C8—C7—C12 | 117.45 (17) | ||
C1—N1—C13—O1 | −3.5 (3) | F4—C5—C6—F5 | 2.1 (3) |
C1—N1—C13—N2 | 177.01 (17) | F4—C5—C6—C1 | −178.37 (15) |
C13—N1—C1—C2 | 133.29 (19) | C4—C5—C6—F5 | −177.65 (17) |
C13—N1—C1—C6 | −51.4 (3) | C4—C5—C6—C1 | 1.8 (3) |
C7—N2—C13—O1 | −0.5 (3) | N2—C7—C8—F6 | 0.8 (3) |
C7—N2—C13—N1 | 179.00 (16) | N2—C7—C8—C9 | −178.16 (16) |
C13—N2—C7—C8 | −125.94 (19) | N2—C7—C12—F10 | 0.4 (3) |
C13—N2—C7—C12 | 56.8 (3) | N2—C7—C12—C11 | 179.16 (16) |
N1—C1—C2—F1 | −3.3 (3) | C8—C7—C12—F10 | −176.99 (16) |
N1—C1—C2—C3 | 174.14 (16) | C8—C7—C12—C11 | 1.8 (3) |
N1—C1—C6—F5 | 3.0 (3) | C12—C7—C8—F6 | 178.23 (16) |
N1—C1—C6—C5 | −176.48 (16) | C12—C7—C8—C9 | −0.8 (3) |
C2—C1—C6—F5 | 178.43 (16) | F6—C8—C9—F7 | −0.1 (3) |
C2—C1—C6—C5 | −1.1 (3) | F6—C8—C9—C10 | 179.98 (15) |
C6—C1—C2—F1 | −178.95 (16) | C7—C8—C9—F7 | 178.88 (17) |
C6—C1—C2—C3 | −1.5 (3) | C7—C8—C9—C10 | −1.0 (3) |
F1—C2—C3—F2 | 0.4 (3) | F7—C9—C10—F8 | 1.7 (3) |
F1—C2—C3—C4 | −179.26 (15) | F7—C9—C10—C11 | −178.09 (17) |
C1—C2—C3—F2 | −177.03 (17) | C8—C9—C10—F8 | −178.41 (18) |
C1—C2—C3—C4 | 3.3 (3) | C8—C9—C10—C11 | 1.8 (3) |
F2—C3—C4—F3 | −1.5 (3) | F8—C10—C11—F9 | −1.1 (3) |
F2—C3—C4—C5 | 177.88 (16) | F8—C10—C11—C12 | 179.42 (16) |
C2—C3—C4—F3 | 178.15 (17) | C9—C10—C11—F9 | 178.72 (18) |
C2—C3—C4—C5 | −2.5 (3) | C9—C10—C11—C12 | −0.8 (3) |
F3—C4—C5—F4 | −0.4 (3) | F9—C11—C12—F10 | −1.8 (3) |
F3—C4—C5—C6 | 179.35 (16) | F9—C11—C12—C7 | 179.43 (16) |
C3—C4—C5—F4 | −179.83 (18) | C10—C11—C12—F10 | 177.76 (17) |
C3—C4—C5—C6 | −0.0 (3) | C10—C11—C12—C7 | −1.0 (3) |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) −x+2, y+1/2, −z+1/2; (iii) x+1, y, z; (iv) −x+3/2, −y+1, z−1/2; (v) x−1, y, z; (vi) −x+2, y−1/2, −z+1/2; (vii) −x+1/2, −y+1, z−1/2; (viii) −x+1, y−1/2, −z+1/2; (ix) x+1/2, −y+3/2, −z+1; (x) −x+3/2, −y+1, z+1/2; (xi) x−1/2, −y+3/2, −z+1; (xii) −x+1/2, −y+1, z+1/2; (xiii) x+1/2, −y+1/2, −z+1; (xiv) x−1/2, −y+1/2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1iii | 0.864 (18) | 2.057 (18) | 2.850 (3) | 152 (3) |
N2—H2···O1iii | 0.879 (18) | 2.008 (18) | 2.825 (3) | 154 (3) |
Symmetry code: (iii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C13H2F10N2O |
Mr | 392.16 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 93 |
a, b, c (Å) | 4.5798 (7), 9.5411 (16), 29.136 (5) |
V (Å3) | 1273.1 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.15 × 0.15 × 0.03 |
Data collection | |
Diffractometer | Rigaku Saturn724+ diffractometer |
Absorption correction | Numerical (NUMABS; Rigaku, 1999) |
Tmin, Tmax | 0.978, 0.993 |
No. of measured, independent and observed [F2 > 2σ(F2)] reflections | 10307, 1993, 1941 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.080, 1.09 |
No. of reflections | 1991 |
No. of parameters | 241 |
No. of restraints | 2 |
H-atom treatment | Only H-atom coordinates refined |
Δρmax, Δρmin (e Å−3) | 0.34, −0.20 |
Computer programs: CrystalClear (Rigaku, 2008), SIR92 (Altomare, et al., 1994), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), CrystalStructure (Rigaku, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.864 (18) | 2.057 (18) | 2.850 (3) | 152 (3) |
N2—H2···O1i | 0.879 (18) | 2.008 (18) | 2.825 (3) | 154 (3) |
Symmetry code: (i) x+1, y, z. |
Acknowledgements
This work was supported by `Research for Promoting Technological Seeds' of the Japan Science and Technology Agency (JST).
References
Altomare, A., Cascarano, G., Giacovazzo, C., Guagliardi, A., Burla, M. C., Polidori, G. & Camalli, M. (1994). J. Appl. Cryst. 27, 435. CrossRef Web of Science IUCr Journals Google Scholar
Chambers, R. D. (2004). In Fluorine in Organic Chemistry, ch. 9. Oxford: Blackwell Publishing Ltd. Google Scholar
Dannecker, W., Kopf, J. & Rust, H. (1979). Cryst. Struct. Commun. 8, 429–432. CAS Google Scholar
Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854. Web of Science CrossRef CAS IUCr Journals Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Perfluoro aromatic compounds have attracted interest from the viewpoint of the electronic and structural comparison with the original compounds (Chambers, 2004). The title compound, (I), is a perfluoro compound of 1,3-diphenylurea (Dannecker et al., 1979). Previously, (I) was isolated in an orthorhombic Pbca polymorph with Z = 8 [Jai-nhuknan et al., 1997]. A new orthorhombic P212121 polymorph was obtained by recrystallization from a tetrahydrofuran solution.
The dihedral angle between the C1—C6/F1—F5 (r.m.s. deviation = 0.0223 Å) and the C7—C12/F6—F10 (r.m.s. deviation = 0.0181 Å) pentafluorophenyl rings is 30.93 (3)°, which is smaller than that of the reported polymorph. The pentafluorophenyl rings make dihedral angles of 50.35 (6)° and 54.94 (6)°, respectively, with the C13/N1/N2/O1 urea fragment (r.m.s. deviation = 0.0011 Å), and this situation is almost accordance with the reported polymorph.
Both of the N—H groups in one molecule donate protons to the same carbonyl O atom, forming a one-dimensional molecular array along the a axis, where the N···O distances were 2.850 (3) Å for N1···O1i and 2.825 (3) Å for N2···O1i [Symmetry code: (i) x + 1, y, z] (Figure 2). There are close contacts between perfluorophenyl carbons within the array, where the C2···C5i distance is 3.228 (3) Å. Halogen-bonds are also recognized between the arrays. The distances of F2···F10ii and F1···F5iii are 2.709 (2) Å and 2.7323 (18) Å, respectively [Symmetry codes: (ii) -x + 1, y + 1/2, -z + 1/2 (iii)-x + 2, y + 1/2, -z + 1/2.] (Figure 2).