organic compounds
2-Amino-6-methyl-5-{5-[(naphthalen-2-yloxy)methyl]-1,3,4-oxadiazol-2-ylsulfanyl}-4-(3-nitrophenyl)pyridine-3-carbonitrile
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Pharmaceutical Chemistry, College of Pharmacy, King Saud University, PO Box 2457, Riyadh 11451, Saudi Arabia, and cDepartment of studies in Chemistry, Mangalore University, Mangalagangothri 574 199, India
*Correspondence e-mail: hkfun@usm.my
The 26H18N6O4S, contains two independent molecules (A and B). The dihedral angles between the oxadiazole ring and naphthalene ring system are 42.59 (14) and 6.88 (14) Å in molecules A and B, respectively. The dihedral angles between the pyridine and benzene rings in A and B are 65.53 (13 )and 87.67 (13) Å, respectively. In the crystal, molecules A and B are linked through a pair of N—H⋯N hydrogen bonds involving one -NH2 group H atom and second pair of N—H⋯N hydrogen bonds involving the other -NH2 group H atom, forming an –ABAB– ribbon along [100] containing R22(8) and R22(12) ring motifs. These ribbons are further connected by weak C—H⋯N, C—H⋯O and C—H⋯π interactions, resulting in a three-dimensional network. The crystal studied was a non-merohedral twin with refined components 0.906 (1):0.094 (1).
of the title compound, CRelated literature
For background to pyridine chemistry, see: Youngdale (1980, 1982); Todd (1970a,b); Lohaus et al. (1968, 1970); Gachet et al. (1995); Yao et al. (1994); Umemura et al. (1995). For background to 1,3,4-oxadiazole chemistry, see: Jin et al. (2006); Bhandari et al. (2008); Krasovskii et al. (2000); Mishra et al. (1995); Suman et al. (1979). For hydrogen-bond motifs, see: Bernstein et al. (1995). For standard bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813005837/lh5588sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813005837/lh5588Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813005837/lh5588Isup3.cml
A mixture of malononitrile (10 mmol), substituted benzaldehyde (10 mmol), ammonium acetate (12.5 mmol) and 2-(5-((naphthalen-6-yloxy)methyl)-1,3,4-oxadiazol-2-ylthio)-1-(3-nitrophenyl)ethanone (8.33 mmol) in anhydrous benzene (25 ml) was refluxed for 18hrs, under nitrogen atm. Excess solvent was removed under reduced pressure. Residue was dissolved in ehtylacetate (50 ml) and washed successively with sodium bicarbonate solution (2 × 25 ml), water (2 × 25 ml), saturated brine solution (1 × 25 ml) and dried over anhydrous Na2SO4. Organic layer was evaporated to dryness and crude product was purified over silica using Dichloromethane/Methanol as
Crystals suitable for X-ray studies were grown in a dimethylformamide solution (m.p:. 485 K).N-bound H atoms were located in a difference Fourier map and were refined freely [refined N–H distance 0.86 (4), 0.84 (4), 0.92 (4) and 0.85 (4) Å]. The remaining hydrogen atoms were positioned geometrically [C–H = 0.95–0.99 Å] and were refined using a riding model, with Uiso(H) = 1.2 Ueq(C) or 1.5Ueq(methyl C). A rotating-group model was used for the methyl group. The crystal used was a non-merohedral twin with refined components 0.906 (1):0.094 (1). The structure was refined using the HKLF 5 type input.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound with 50% probability displacement ellipsoids. | |
Fig. 2. The crystal packing of the title compound. The H atoms not involved in the intermolecular interactions (dashed lines) have been omitted for clarity. |
C26H18N6O4S | Z = 4 |
Mr = 510.52 | F(000) = 1056 |
Triclinic, P1 | Dx = 1.467 Mg m−3 |
Hall symbol: -P 1 | Melting point: 485 K |
a = 9.6132 (9) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.8928 (10) Å | Cell parameters from 9913 reflections |
c = 25.724 (2) Å | θ = 2.2–31.8° |
α = 83.215 (2)° | µ = 0.19 mm−1 |
β = 84.102 (2)° | T = 100 K |
γ = 72.564 (2)° | Block, yellow |
V = 2311.8 (4) Å3 | 0.23 × 0.19 × 0.09 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 9469 independent reflections |
Radiation source: fine-focus sealed tube | 8293 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.000 |
ϕ and ω scans | θmax = 26.5°, θmin = 0.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −11→12 |
Tmin = 0.958, Tmax = 0.983 | k = −12→12 |
9469 measured reflections | l = −8→32 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.056 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.20 | w = 1/[σ2(Fo2) + (0.0612P)2 + 3.203P] where P = (Fo2 + 2Fc2)/3 |
9469 reflections | (Δ/σ)max < 0.001 |
686 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.36 e Å−3 |
C26H18N6O4S | γ = 72.564 (2)° |
Mr = 510.52 | V = 2311.8 (4) Å3 |
Triclinic, P1 | Z = 4 |
a = 9.6132 (9) Å | Mo Kα radiation |
b = 9.8928 (10) Å | µ = 0.19 mm−1 |
c = 25.724 (2) Å | T = 100 K |
α = 83.215 (2)° | 0.23 × 0.19 × 0.09 mm |
β = 84.102 (2)° |
Bruker SMART APEXII CCD area-detector diffractometer | 9469 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 8293 reflections with I > 2σ(I) |
Tmin = 0.958, Tmax = 0.983 | Rint = 0.000 |
9469 measured reflections |
R[F2 > 2σ(F2)] = 0.056 | 0 restraints |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.20 | Δρmax = 0.32 e Å−3 |
9469 reflections | Δρmin = −0.36 e Å−3 |
686 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1A | 0.16398 (8) | 0.33559 (7) | 0.14782 (3) | 0.02095 (16) | |
O1A | 0.2069 (2) | 0.3638 (3) | 0.35113 (8) | 0.0280 (5) | |
O2A | 0.1303 (2) | 0.3595 (2) | 0.25050 (8) | 0.0213 (4) | |
O3A | 0.5886 (3) | 0.4263 (4) | 0.30149 (11) | 0.0575 (8) | |
O4A | 0.3665 (3) | 0.5428 (3) | 0.28534 (9) | 0.0396 (6) | |
N1A | −0.0325 (3) | 0.5693 (3) | 0.25986 (10) | 0.0277 (6) | |
N2A | −0.0094 (3) | 0.5480 (3) | 0.20579 (10) | 0.0287 (6) | |
N3A | 0.0759 (3) | 0.6626 (3) | 0.03544 (9) | 0.0204 (5) | |
N4A | 0.2071 (3) | 0.8008 (3) | −0.01105 (10) | 0.0214 (5) | |
N5A | 0.5614 (3) | 0.6973 (3) | 0.03452 (11) | 0.0288 (6) | |
N6A | 0.4891 (3) | 0.4695 (3) | 0.27254 (11) | 0.0336 (6) | |
C1A | 0.3849 (3) | 0.2575 (3) | 0.41111 (12) | 0.0252 (6) | |
H1AA | 0.4561 | 0.2476 | 0.3822 | 0.030* | |
C2A | 0.4263 (3) | 0.2099 (3) | 0.46061 (13) | 0.0259 (6) | |
H2AA | 0.5267 | 0.1651 | 0.4658 | 0.031* | |
C3A | 0.3230 (3) | 0.2255 (3) | 0.50459 (12) | 0.0236 (6) | |
C4A | 0.3647 (4) | 0.1835 (3) | 0.55661 (13) | 0.0281 (7) | |
H4AA | 0.4649 | 0.1416 | 0.5629 | 0.034* | |
C5A | 0.2605 (4) | 0.2033 (3) | 0.59803 (13) | 0.0316 (7) | |
H5AA | 0.2895 | 0.1772 | 0.6329 | 0.038* | |
C6A | 0.1123 (4) | 0.2614 (3) | 0.58938 (13) | 0.0294 (7) | |
H6AA | 0.0412 | 0.2709 | 0.6183 | 0.035* | |
C7A | 0.0686 (3) | 0.3049 (3) | 0.53921 (12) | 0.0253 (6) | |
H7AA | −0.0324 | 0.3450 | 0.5338 | 0.030* | |
C8A | 0.1731 (3) | 0.2905 (3) | 0.49567 (12) | 0.0209 (6) | |
C9A | 0.1316 (3) | 0.3385 (3) | 0.44375 (12) | 0.0216 (6) | |
H9AA | 0.0316 | 0.3822 | 0.4375 | 0.026* | |
C10A | 0.2355 (3) | 0.3217 (3) | 0.40290 (12) | 0.0232 (6) | |
C11A | 0.0578 (3) | 0.4200 (3) | 0.34090 (12) | 0.0245 (6) | |
H11A | 0.0122 | 0.5059 | 0.3597 | 0.029* | |
H11B | 0.0050 | 0.3488 | 0.3531 | 0.029* | |
C12A | 0.0495 (3) | 0.4566 (3) | 0.28371 (11) | 0.0217 (6) | |
C13A | 0.0851 (3) | 0.4250 (3) | 0.20303 (11) | 0.0194 (6) | |
C14A | 0.1813 (3) | 0.4818 (3) | 0.10292 (11) | 0.0198 (6) | |
C15A | 0.0658 (3) | 0.5560 (3) | 0.07162 (11) | 0.0210 (6) | |
C16A | 0.2025 (3) | 0.6962 (3) | 0.02677 (10) | 0.0188 (5) | |
C17A | 0.3244 (3) | 0.6238 (3) | 0.05665 (11) | 0.0192 (6) | |
C18A | 0.3120 (3) | 0.5182 (3) | 0.09630 (10) | 0.0182 (5) | |
C19A | 0.4320 (3) | 0.4553 (3) | 0.13243 (11) | 0.0196 (6) | |
C20A | 0.5712 (3) | 0.3765 (3) | 0.11430 (13) | 0.0259 (6) | |
H20A | 0.5901 | 0.3577 | 0.0785 | 0.031* | |
C21A | 0.6824 (3) | 0.3254 (3) | 0.14864 (13) | 0.0290 (7) | |
H21A | 0.7764 | 0.2706 | 0.1361 | 0.035* | |
C22A | 0.6573 (3) | 0.3536 (3) | 0.20104 (14) | 0.0300 (7) | |
H22A | 0.7330 | 0.3201 | 0.2245 | 0.036* | |
C23A | 0.5191 (3) | 0.4318 (3) | 0.21772 (12) | 0.0252 (6) | |
C24A | 0.4061 (3) | 0.4836 (3) | 0.18467 (11) | 0.0205 (6) | |
H24A | 0.3122 | 0.5376 | 0.1976 | 0.025* | |
C25A | −0.0770 (3) | 0.5216 (4) | 0.07700 (13) | 0.0288 (7) | |
H25A | −0.1439 | 0.5870 | 0.0527 | 0.043* | |
H25B | −0.1200 | 0.5317 | 0.1131 | 0.043* | |
H25C | −0.0605 | 0.4235 | 0.0687 | 0.043* | |
C26A | 0.4569 (3) | 0.6636 (3) | 0.04550 (11) | 0.0213 (6) | |
S1B | 0.12684 (8) | 0.83421 (8) | 0.21600 (3) | 0.02183 (17) | |
O1B | −0.1561 (2) | 1.2195 (2) | 0.39059 (8) | 0.0265 (5) | |
O2B | −0.0028 (2) | 0.9464 (2) | 0.30307 (8) | 0.0208 (4) | |
O3B | 0.6655 (3) | 1.0426 (3) | 0.29656 (11) | 0.0454 (7) | |
O4B | 0.4448 (3) | 1.1689 (3) | 0.28241 (10) | 0.0377 (6) | |
N1B | −0.0584 (3) | 1.1801 (3) | 0.28436 (10) | 0.0276 (6) | |
N2B | 0.0113 (3) | 1.1138 (3) | 0.23840 (10) | 0.0262 (6) | |
N3B | 0.0583 (2) | 1.0526 (3) | 0.07428 (9) | 0.0192 (5) | |
N4B | 0.1950 (3) | 1.1622 (3) | 0.01522 (10) | 0.0247 (5) | |
N5B | 0.5528 (3) | 1.0738 (3) | 0.05879 (10) | 0.0270 (6) | |
N6B | 0.5503 (3) | 1.0651 (3) | 0.27607 (10) | 0.0266 (6) | |
C1B | −0.1881 (3) | 1.1234 (3) | 0.48129 (11) | 0.0206 (6) | |
H1BA | −0.1440 | 1.0282 | 0.4729 | 0.025* | |
C2B | −0.2398 (3) | 1.1516 (3) | 0.53383 (12) | 0.0212 (6) | |
C3B | −0.2306 (3) | 1.0404 (3) | 0.57422 (12) | 0.0230 (6) | |
H3BA | −0.1890 | 0.9447 | 0.5662 | 0.028* | |
C4B | −0.2807 (3) | 1.0679 (3) | 0.62501 (12) | 0.0256 (6) | |
H4BA | −0.2746 | 0.9916 | 0.6517 | 0.031* | |
C5B | −0.3413 (4) | 1.2102 (4) | 0.63744 (12) | 0.0291 (7) | |
H5BA | −0.3744 | 1.2295 | 0.6726 | 0.035* | |
C6B | −0.3525 (3) | 1.3201 (3) | 0.59898 (12) | 0.0265 (6) | |
H6BA | −0.3935 | 1.4152 | 0.6078 | 0.032* | |
C7B | −0.3041 (3) | 1.2946 (3) | 0.54617 (12) | 0.0225 (6) | |
C8B | −0.3159 (3) | 1.4046 (3) | 0.50515 (13) | 0.0262 (6) | |
H8BA | −0.3596 | 1.5004 | 0.5129 | 0.031* | |
C9B | −0.2666 (3) | 1.3773 (3) | 0.45474 (13) | 0.0253 (6) | |
H9BA | −0.2751 | 1.4533 | 0.4278 | 0.030* | |
C10B | −0.2024 (3) | 1.2343 (3) | 0.44277 (12) | 0.0223 (6) | |
C11B | −0.1193 (3) | 1.0798 (3) | 0.37579 (11) | 0.0231 (6) | |
H11C | −0.2067 | 1.0450 | 0.3806 | 0.028* | |
H11D | −0.0439 | 1.0157 | 0.3981 | 0.028* | |
C12B | −0.0627 (3) | 1.0796 (3) | 0.31969 (11) | 0.0203 (6) | |
C13B | 0.0402 (3) | 0.9793 (3) | 0.25173 (11) | 0.0199 (6) | |
C14B | 0.1555 (3) | 0.9272 (3) | 0.15448 (11) | 0.0190 (5) | |
C15B | 0.0435 (3) | 0.9761 (3) | 0.11971 (11) | 0.0205 (6) | |
C16B | 0.1880 (3) | 1.0798 (3) | 0.05979 (11) | 0.0190 (5) | |
C17B | 0.3088 (3) | 1.0223 (3) | 0.09096 (11) | 0.0177 (5) | |
C18B | 0.2900 (3) | 0.9505 (3) | 0.13989 (11) | 0.0179 (5) | |
C19B | 0.4140 (3) | 0.9067 (3) | 0.17522 (11) | 0.0194 (6) | |
C20B | 0.5258 (3) | 0.7806 (3) | 0.17060 (12) | 0.0248 (6) | |
H20B | 0.5217 | 0.7180 | 0.1459 | 0.030* | |
C21B | 0.6430 (3) | 0.7456 (3) | 0.20176 (13) | 0.0285 (7) | |
H21B | 0.7179 | 0.6582 | 0.1988 | 0.034* | |
C22B | 0.6517 (3) | 0.8372 (3) | 0.23727 (12) | 0.0255 (6) | |
H22B | 0.7320 | 0.8143 | 0.2587 | 0.031* | |
C23B | 0.5406 (3) | 0.9624 (3) | 0.24066 (11) | 0.0216 (6) | |
C24B | 0.4199 (3) | 0.9991 (3) | 0.21079 (11) | 0.0214 (6) | |
H24B | 0.3436 | 1.0850 | 0.2147 | 0.026* | |
C25B | −0.1006 (3) | 0.9448 (4) | 0.13195 (13) | 0.0278 (7) | |
H25D | −0.1602 | 0.9789 | 0.1017 | 0.042* | |
H25E | −0.1519 | 0.9931 | 0.1626 | 0.042* | |
H25F | −0.0836 | 0.8419 | 0.1395 | 0.042* | |
C26B | 0.4452 (3) | 1.0496 (3) | 0.07378 (11) | 0.0209 (6) | |
H2NA | 0.283 (4) | 0.831 (4) | −0.0159 (13) | 0.020 (8)* | |
H1NA | 0.129 (4) | 0.852 (4) | −0.0238 (14) | 0.026 (9)* | |
H2NB | 0.116 (4) | 1.215 (4) | −0.0027 (16) | 0.036 (10)* | |
H1NB | 0.274 (5) | 1.183 (4) | 0.0053 (16) | 0.040 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1A | 0.0232 (4) | 0.0202 (3) | 0.0190 (3) | −0.0060 (3) | −0.0007 (3) | −0.0009 (3) |
O1A | 0.0226 (11) | 0.0401 (13) | 0.0190 (10) | −0.0072 (9) | −0.0023 (8) | 0.0022 (9) |
O2A | 0.0244 (10) | 0.0202 (10) | 0.0169 (10) | −0.0032 (8) | −0.0009 (8) | −0.0007 (8) |
O3A | 0.0607 (19) | 0.080 (2) | 0.0346 (15) | −0.0171 (16) | −0.0291 (14) | −0.0020 (14) |
O4A | 0.0553 (17) | 0.0385 (14) | 0.0248 (12) | −0.0119 (12) | −0.0011 (11) | −0.0082 (10) |
N1A | 0.0297 (14) | 0.0243 (13) | 0.0229 (13) | 0.0009 (11) | −0.0020 (11) | −0.0003 (10) |
N2A | 0.0278 (14) | 0.0284 (14) | 0.0227 (13) | 0.0029 (11) | −0.0025 (11) | −0.0019 (11) |
N3A | 0.0177 (11) | 0.0284 (13) | 0.0156 (11) | −0.0074 (10) | −0.0018 (9) | −0.0018 (10) |
N4A | 0.0155 (12) | 0.0284 (13) | 0.0199 (12) | −0.0068 (11) | −0.0027 (10) | 0.0016 (10) |
N5A | 0.0200 (13) | 0.0388 (15) | 0.0268 (14) | −0.0109 (11) | −0.0056 (10) | 0.0103 (11) |
N6A | 0.0445 (17) | 0.0364 (16) | 0.0245 (14) | −0.0167 (14) | −0.0128 (13) | 0.0004 (12) |
C1A | 0.0199 (14) | 0.0292 (16) | 0.0268 (15) | −0.0081 (12) | 0.0018 (12) | −0.0045 (12) |
C2A | 0.0186 (14) | 0.0261 (15) | 0.0338 (17) | −0.0069 (12) | −0.0062 (12) | −0.0014 (13) |
C3A | 0.0269 (15) | 0.0174 (13) | 0.0283 (16) | −0.0085 (12) | −0.0057 (12) | −0.0007 (11) |
C4A | 0.0319 (16) | 0.0250 (15) | 0.0303 (17) | −0.0124 (13) | −0.0112 (13) | 0.0050 (12) |
C5A | 0.048 (2) | 0.0266 (16) | 0.0243 (16) | −0.0156 (15) | −0.0109 (14) | 0.0040 (13) |
C6A | 0.0421 (19) | 0.0228 (15) | 0.0234 (15) | −0.0116 (14) | 0.0031 (13) | −0.0011 (12) |
C7A | 0.0294 (16) | 0.0194 (14) | 0.0269 (16) | −0.0070 (12) | −0.0010 (12) | −0.0021 (12) |
C8A | 0.0260 (15) | 0.0142 (13) | 0.0239 (14) | −0.0078 (11) | −0.0027 (12) | −0.0013 (11) |
C9A | 0.0213 (14) | 0.0180 (13) | 0.0248 (15) | −0.0045 (11) | −0.0037 (11) | −0.0006 (11) |
C10A | 0.0260 (15) | 0.0244 (14) | 0.0207 (14) | −0.0088 (12) | −0.0034 (12) | −0.0020 (11) |
C11A | 0.0233 (15) | 0.0260 (15) | 0.0213 (15) | −0.0039 (12) | −0.0009 (11) | −0.0004 (12) |
C12A | 0.0185 (14) | 0.0236 (14) | 0.0211 (14) | −0.0035 (11) | 0.0010 (11) | −0.0028 (11) |
C13A | 0.0175 (13) | 0.0229 (14) | 0.0165 (13) | −0.0049 (11) | −0.0027 (10) | 0.0024 (11) |
C14A | 0.0181 (13) | 0.0233 (14) | 0.0182 (13) | −0.0063 (11) | 0.0007 (11) | −0.0032 (11) |
C15A | 0.0183 (13) | 0.0281 (15) | 0.0158 (13) | −0.0064 (11) | −0.0006 (11) | −0.0009 (11) |
C16A | 0.0180 (13) | 0.0254 (14) | 0.0130 (12) | −0.0056 (11) | −0.0019 (10) | −0.0025 (11) |
C17A | 0.0153 (13) | 0.0271 (15) | 0.0151 (13) | −0.0054 (11) | −0.0018 (10) | −0.0033 (11) |
C18A | 0.0176 (13) | 0.0210 (13) | 0.0147 (13) | −0.0028 (11) | −0.0001 (10) | −0.0051 (10) |
C19A | 0.0182 (13) | 0.0212 (14) | 0.0202 (14) | −0.0069 (11) | −0.0023 (11) | −0.0009 (11) |
C20A | 0.0233 (15) | 0.0243 (15) | 0.0272 (16) | −0.0036 (12) | 0.0009 (12) | −0.0021 (12) |
C21A | 0.0183 (14) | 0.0247 (15) | 0.0390 (18) | −0.0007 (12) | −0.0009 (13) | 0.0015 (13) |
C22A | 0.0235 (15) | 0.0277 (16) | 0.0376 (18) | −0.0058 (13) | −0.0127 (13) | 0.0064 (13) |
C23A | 0.0317 (16) | 0.0261 (15) | 0.0206 (14) | −0.0120 (13) | −0.0065 (12) | 0.0008 (12) |
C24A | 0.0205 (14) | 0.0206 (14) | 0.0208 (14) | −0.0070 (11) | −0.0019 (11) | −0.0009 (11) |
C25A | 0.0219 (15) | 0.0364 (18) | 0.0287 (16) | −0.0115 (13) | −0.0066 (12) | 0.0064 (13) |
C26A | 0.0206 (14) | 0.0263 (15) | 0.0147 (13) | −0.0039 (12) | −0.0049 (11) | 0.0025 (11) |
S1B | 0.0244 (4) | 0.0207 (3) | 0.0181 (3) | −0.0055 (3) | 0.0014 (3) | 0.0021 (3) |
O1B | 0.0316 (12) | 0.0241 (11) | 0.0218 (11) | −0.0076 (9) | 0.0063 (9) | −0.0027 (8) |
O2B | 0.0193 (10) | 0.0233 (10) | 0.0165 (10) | −0.0022 (8) | −0.0020 (8) | 0.0013 (8) |
O3B | 0.0428 (15) | 0.0419 (15) | 0.0556 (17) | −0.0091 (12) | −0.0321 (13) | −0.0043 (13) |
O4B | 0.0333 (13) | 0.0393 (14) | 0.0402 (14) | −0.0031 (11) | −0.0077 (11) | −0.0170 (11) |
N1B | 0.0301 (14) | 0.0273 (14) | 0.0220 (13) | −0.0054 (11) | 0.0050 (11) | −0.0027 (10) |
N2B | 0.0308 (14) | 0.0245 (13) | 0.0201 (13) | −0.0062 (11) | 0.0053 (10) | −0.0003 (10) |
N3B | 0.0139 (11) | 0.0262 (12) | 0.0172 (11) | −0.0054 (9) | −0.0023 (9) | −0.0011 (9) |
N4B | 0.0155 (12) | 0.0376 (15) | 0.0205 (13) | −0.0103 (11) | −0.0027 (10) | 0.0072 (11) |
N5B | 0.0196 (13) | 0.0344 (15) | 0.0262 (14) | −0.0087 (11) | −0.0045 (10) | 0.0051 (11) |
N6B | 0.0297 (14) | 0.0279 (14) | 0.0242 (13) | −0.0101 (11) | −0.0101 (11) | 0.0018 (11) |
C1B | 0.0180 (13) | 0.0185 (13) | 0.0245 (15) | −0.0046 (11) | 0.0003 (11) | −0.0027 (11) |
C2B | 0.0177 (13) | 0.0220 (14) | 0.0264 (15) | −0.0077 (11) | −0.0012 (11) | −0.0071 (12) |
C3B | 0.0231 (14) | 0.0227 (14) | 0.0234 (15) | −0.0058 (12) | −0.0017 (12) | −0.0050 (12) |
C4B | 0.0273 (15) | 0.0292 (16) | 0.0221 (15) | −0.0112 (13) | −0.0034 (12) | −0.0005 (12) |
C5B | 0.0313 (17) | 0.0372 (18) | 0.0213 (15) | −0.0121 (14) | 0.0022 (12) | −0.0097 (13) |
C6B | 0.0275 (15) | 0.0256 (15) | 0.0289 (16) | −0.0095 (12) | 0.0036 (12) | −0.0127 (13) |
C7B | 0.0173 (13) | 0.0221 (14) | 0.0288 (15) | −0.0061 (11) | 0.0019 (11) | −0.0075 (12) |
C8B | 0.0234 (15) | 0.0197 (14) | 0.0354 (17) | −0.0063 (12) | 0.0015 (13) | −0.0059 (12) |
C9B | 0.0232 (15) | 0.0204 (14) | 0.0311 (16) | −0.0069 (12) | 0.0016 (12) | 0.0016 (12) |
C10B | 0.0199 (14) | 0.0253 (15) | 0.0212 (14) | −0.0074 (11) | 0.0043 (11) | −0.0027 (11) |
C11B | 0.0239 (14) | 0.0249 (15) | 0.0202 (14) | −0.0077 (12) | 0.0000 (11) | −0.0004 (11) |
C12B | 0.0169 (13) | 0.0254 (14) | 0.0185 (14) | −0.0064 (11) | −0.0008 (10) | −0.0012 (11) |
C13B | 0.0188 (13) | 0.0257 (14) | 0.0150 (13) | −0.0086 (11) | 0.0003 (10) | 0.0029 (11) |
C14B | 0.0193 (13) | 0.0188 (13) | 0.0170 (13) | −0.0032 (11) | −0.0003 (11) | −0.0010 (10) |
C15B | 0.0201 (14) | 0.0216 (14) | 0.0201 (14) | −0.0070 (11) | 0.0003 (11) | −0.0022 (11) |
C16B | 0.0162 (13) | 0.0237 (14) | 0.0179 (13) | −0.0065 (11) | −0.0015 (10) | −0.0029 (11) |
C17B | 0.0132 (12) | 0.0199 (13) | 0.0188 (13) | −0.0033 (10) | −0.0008 (10) | −0.0016 (10) |
C18B | 0.0191 (13) | 0.0155 (12) | 0.0177 (13) | −0.0026 (10) | −0.0024 (10) | −0.0019 (10) |
C19B | 0.0175 (13) | 0.0220 (14) | 0.0191 (13) | −0.0084 (11) | −0.0005 (11) | 0.0028 (11) |
C20B | 0.0231 (15) | 0.0236 (15) | 0.0262 (15) | −0.0051 (12) | −0.0033 (12) | 0.0000 (12) |
C21B | 0.0208 (15) | 0.0264 (16) | 0.0339 (17) | −0.0004 (12) | −0.0049 (13) | 0.0000 (13) |
C22B | 0.0181 (14) | 0.0305 (16) | 0.0250 (15) | −0.0050 (12) | −0.0065 (11) | 0.0077 (12) |
C23B | 0.0235 (14) | 0.0252 (14) | 0.0164 (13) | −0.0077 (12) | −0.0044 (11) | 0.0008 (11) |
C24B | 0.0193 (14) | 0.0215 (14) | 0.0204 (14) | −0.0021 (11) | −0.0045 (11) | 0.0024 (11) |
C25B | 0.0237 (15) | 0.0347 (17) | 0.0258 (16) | −0.0122 (13) | −0.0032 (12) | 0.0052 (13) |
C26B | 0.0191 (14) | 0.0230 (14) | 0.0186 (14) | −0.0036 (11) | −0.0053 (11) | 0.0030 (11) |
S1A—C13A | 1.746 (3) | S1B—C13B | 1.742 (3) |
S1A—C14A | 1.779 (3) | S1B—C14B | 1.773 (3) |
O1A—C10A | 1.378 (4) | O1B—C10B | 1.381 (4) |
O1A—C11A | 1.414 (4) | O1B—C11B | 1.409 (4) |
O2A—C13A | 1.361 (3) | O2B—C12B | 1.370 (4) |
O2A—C12A | 1.366 (3) | O2B—C13B | 1.374 (3) |
O3A—N6A | 1.216 (4) | O3B—N6B | 1.224 (3) |
O4A—N6A | 1.219 (4) | O4B—N6B | 1.221 (4) |
N1A—C12A | 1.285 (4) | N1B—C12B | 1.273 (4) |
N1A—N2A | 1.416 (4) | N1B—N2B | 1.426 (4) |
N2A—C13A | 1.287 (4) | N2B—C13B | 1.287 (4) |
N3A—C15A | 1.341 (4) | N3B—C15B | 1.334 (4) |
N3A—C16A | 1.346 (4) | N3B—C16B | 1.359 (3) |
N4A—C16A | 1.342 (4) | N4B—C16B | 1.334 (4) |
N4A—H2NA | 0.86 (4) | N4B—H2NB | 0.92 (4) |
N4A—H1NA | 0.84 (4) | N4B—H1NB | 0.85 (4) |
N5A—C26A | 1.149 (4) | N5B—C26B | 1.149 (4) |
N6A—C23A | 1.479 (4) | N6B—C23B | 1.471 (4) |
C1A—C2A | 1.361 (4) | C1B—C10B | 1.374 (4) |
C1A—C10A | 1.413 (4) | C1B—C2B | 1.421 (4) |
C1A—H1AA | 0.9500 | C1B—H1BA | 0.9500 |
C2A—C3A | 1.417 (4) | C2B—C3B | 1.410 (4) |
C2A—H2AA | 0.9500 | C2B—C7B | 1.424 (4) |
C3A—C4A | 1.415 (4) | C3B—C4B | 1.374 (4) |
C3A—C8A | 1.422 (4) | C3B—H3BA | 0.9500 |
C4A—C5A | 1.375 (5) | C4B—C5B | 1.414 (5) |
C4A—H4AA | 0.9500 | C4B—H4BA | 0.9500 |
C5A—C6A | 1.398 (5) | C5B—C6B | 1.368 (5) |
C5A—H5AA | 0.9500 | C5B—H5BA | 0.9500 |
C6A—C7A | 1.378 (4) | C6B—C7B | 1.416 (4) |
C6A—H6AA | 0.9500 | C6B—H6BA | 0.9500 |
C7A—C8A | 1.416 (4) | C7B—C8B | 1.410 (4) |
C7A—H7AA | 0.9500 | C8B—C9B | 1.363 (5) |
C8A—C9A | 1.419 (4) | C8B—H8BA | 0.9500 |
C9A—C10A | 1.362 (4) | C9B—C10B | 1.420 (4) |
C9A—H9AA | 0.9500 | C9B—H9BA | 0.9500 |
C11A—C12A | 1.477 (4) | C11B—C12B | 1.489 (4) |
C11A—H11A | 0.9900 | C11B—H11C | 0.9900 |
C11A—H11B | 0.9900 | C11B—H11D | 0.9900 |
C14A—C18A | 1.397 (4) | C14B—C18B | 1.388 (4) |
C14A—C15A | 1.405 (4) | C14B—C15B | 1.405 (4) |
C15A—C25A | 1.499 (4) | C15B—C25B | 1.503 (4) |
C16A—C17A | 1.425 (4) | C16B—C17B | 1.415 (4) |
C17A—C18A | 1.395 (4) | C17B—C18B | 1.393 (4) |
C17A—C26A | 1.434 (4) | C17B—C26B | 1.432 (4) |
C18A—C19A | 1.495 (4) | C18B—C19B | 1.501 (4) |
C19A—C24A | 1.387 (4) | C19B—C24B | 1.383 (4) |
C19A—C20A | 1.395 (4) | C19B—C20B | 1.389 (4) |
C20A—C21A | 1.394 (4) | C20B—C21B | 1.385 (4) |
C20A—H20A | 0.9500 | C20B—H20B | 0.9500 |
C21A—C22A | 1.391 (5) | C21B—C22B | 1.386 (5) |
C21A—H21A | 0.9500 | C21B—H21B | 0.9500 |
C22A—C23A | 1.376 (5) | C22B—C23B | 1.377 (4) |
C22A—H22A | 0.9500 | C22B—H22B | 0.9500 |
C23A—C24A | 1.385 (4) | C23B—C24B | 1.391 (4) |
C24A—H24A | 0.9500 | C24B—H24B | 0.9500 |
C25A—H25A | 0.9800 | C25B—H25D | 0.9800 |
C25A—H25B | 0.9800 | C25B—H25E | 0.9800 |
C25A—H25C | 0.9800 | C25B—H25F | 0.9800 |
C13A—S1A—C14A | 99.92 (13) | C13B—S1B—C14B | 98.96 (13) |
C10A—O1A—C11A | 116.0 (2) | C10B—O1B—C11B | 115.3 (2) |
C13A—O2A—C12A | 101.6 (2) | C12B—O2B—C13B | 101.0 (2) |
C12A—N1A—N2A | 105.9 (2) | C12B—N1B—N2B | 106.1 (2) |
C13A—N2A—N1A | 105.5 (2) | C13B—N2B—N1B | 105.2 (2) |
C15A—N3A—C16A | 119.5 (2) | C15B—N3B—C16B | 119.2 (2) |
C16A—N4A—H2NA | 119 (2) | C16B—N4B—H2NB | 125 (2) |
C16A—N4A—H1NA | 119 (2) | C16B—N4B—H1NB | 119 (3) |
H2NA—N4A—H1NA | 119 (3) | H2NB—N4B—H1NB | 115 (4) |
O3A—N6A—O4A | 124.7 (3) | O4B—N6B—O3B | 124.0 (3) |
O3A—N6A—C23A | 117.7 (3) | O4B—N6B—C23B | 118.3 (2) |
O4A—N6A—C23A | 117.6 (3) | O3B—N6B—C23B | 117.7 (3) |
C2A—C1A—C10A | 119.6 (3) | C10B—C1B—C2B | 119.6 (3) |
C2A—C1A—H1AA | 120.2 | C10B—C1B—H1BA | 120.2 |
C10A—C1A—H1AA | 120.2 | C2B—C1B—H1BA | 120.2 |
C1A—C2A—C3A | 121.5 (3) | C3B—C2B—C1B | 121.4 (3) |
C1A—C2A—H2AA | 119.2 | C3B—C2B—C7B | 118.9 (3) |
C3A—C2A—H2AA | 119.2 | C1B—C2B—C7B | 119.7 (3) |
C4A—C3A—C2A | 122.3 (3) | C4B—C3B—C2B | 121.3 (3) |
C4A—C3A—C8A | 119.5 (3) | C4B—C3B—H3BA | 119.4 |
C2A—C3A—C8A | 118.2 (3) | C2B—C3B—H3BA | 119.4 |
C5A—C4A—C3A | 120.1 (3) | C3B—C4B—C5B | 119.7 (3) |
C5A—C4A—H4AA | 120.0 | C3B—C4B—H4BA | 120.1 |
C3A—C4A—H4AA | 120.0 | C5B—C4B—H4BA | 120.1 |
C4A—C5A—C6A | 120.7 (3) | C6B—C5B—C4B | 120.2 (3) |
C4A—C5A—H5AA | 119.7 | C6B—C5B—H5BA | 119.9 |
C6A—C5A—H5AA | 119.7 | C4B—C5B—H5BA | 119.9 |
C7A—C6A—C5A | 120.5 (3) | C5B—C6B—C7B | 121.2 (3) |
C7A—C6A—H6AA | 119.8 | C5B—C6B—H6BA | 119.4 |
C5A—C6A—H6AA | 119.8 | C7B—C6B—H6BA | 119.4 |
C6A—C7A—C8A | 120.5 (3) | C8B—C7B—C6B | 123.1 (3) |
C6A—C7A—H7AA | 119.8 | C8B—C7B—C2B | 118.3 (3) |
C8A—C7A—H7AA | 119.8 | C6B—C7B—C2B | 118.6 (3) |
C7A—C8A—C9A | 121.7 (3) | C9B—C8B—C7B | 121.9 (3) |
C7A—C8A—C3A | 118.7 (3) | C9B—C8B—H8BA | 119.1 |
C9A—C8A—C3A | 119.6 (3) | C7B—C8B—H8BA | 119.1 |
C10A—C9A—C8A | 119.8 (3) | C8B—C9B—C10B | 119.5 (3) |
C10A—C9A—H9AA | 120.1 | C8B—C9B—H9BA | 120.3 |
C8A—C9A—H9AA | 120.1 | C10B—C9B—H9BA | 120.3 |
C9A—C10A—O1A | 124.5 (3) | C1B—C10B—O1B | 124.6 (3) |
C9A—C10A—C1A | 121.2 (3) | C1B—C10B—C9B | 121.0 (3) |
O1A—C10A—C1A | 114.3 (3) | O1B—C10B—C9B | 114.4 (3) |
O1A—C11A—C12A | 108.0 (2) | O1B—C11B—C12B | 108.9 (2) |
O1A—C11A—H11A | 110.1 | O1B—C11B—H11C | 109.9 |
C12A—C11A—H11A | 110.1 | C12B—C11B—H11C | 109.9 |
O1A—C11A—H11B | 110.1 | O1B—C11B—H11D | 109.9 |
C12A—C11A—H11B | 110.1 | C12B—C11B—H11D | 109.9 |
H11A—C11A—H11B | 108.4 | H11C—C11B—H11D | 108.3 |
N1A—C12A—O2A | 113.3 (3) | N1B—C12B—O2B | 113.9 (2) |
N1A—C12A—C11A | 127.7 (3) | N1B—C12B—C11B | 132.0 (3) |
O2A—C12A—C11A | 118.9 (2) | O2B—C12B—C11B | 114.1 (2) |
N2A—C13A—O2A | 113.7 (3) | N2B—C13B—O2B | 113.7 (3) |
N2A—C13A—S1A | 129.3 (2) | N2B—C13B—S1B | 130.8 (2) |
O2A—C13A—S1A | 117.1 (2) | O2B—C13B—S1B | 115.5 (2) |
C18A—C14A—C15A | 119.7 (3) | C18B—C14B—C15B | 119.3 (3) |
C18A—C14A—S1A | 120.4 (2) | C18B—C14B—S1B | 120.1 (2) |
C15A—C14A—S1A | 119.8 (2) | C15B—C14B—S1B | 120.6 (2) |
N3A—C15A—C14A | 122.1 (3) | N3B—C15B—C14B | 122.4 (3) |
N3A—C15A—C25A | 115.9 (2) | N3B—C15B—C25B | 116.2 (2) |
C14A—C15A—C25A | 122.0 (3) | C14B—C15B—C25B | 121.4 (3) |
N4A—C16A—N3A | 116.6 (2) | N4B—C16B—N3B | 116.8 (2) |
N4A—C16A—C17A | 122.3 (3) | N4B—C16B—C17B | 122.3 (3) |
N3A—C16A—C17A | 121.1 (3) | N3B—C16B—C17B | 120.8 (3) |
C18A—C17A—C16A | 119.6 (3) | C18B—C17B—C16B | 119.5 (2) |
C18A—C17A—C26A | 121.6 (2) | C18B—C17B—C26B | 120.8 (2) |
C16A—C17A—C26A | 118.7 (3) | C16B—C17B—C26B | 119.4 (2) |
C17A—C18A—C14A | 117.8 (3) | C14B—C18B—C17B | 118.3 (2) |
C17A—C18A—C19A | 119.9 (2) | C14B—C18B—C19B | 123.0 (2) |
C14A—C18A—C19A | 122.1 (3) | C17B—C18B—C19B | 118.7 (2) |
C24A—C19A—C20A | 119.4 (3) | C24B—C19B—C20B | 120.0 (3) |
C24A—C19A—C18A | 118.8 (2) | C24B—C19B—C18B | 118.5 (2) |
C20A—C19A—C18A | 121.7 (3) | C20B—C19B—C18B | 121.4 (3) |
C19A—C20A—C21A | 120.1 (3) | C21B—C20B—C19B | 120.5 (3) |
C19A—C20A—H20A | 119.9 | C21B—C20B—H20B | 119.7 |
C21A—C20A—H20A | 119.9 | C19B—C20B—H20B | 119.7 |
C22A—C21A—C20A | 120.8 (3) | C22B—C21B—C20B | 120.4 (3) |
C22A—C21A—H21A | 119.6 | C22B—C21B—H21B | 119.8 |
C20A—C21A—H21A | 119.6 | C20B—C21B—H21B | 119.8 |
C23A—C22A—C21A | 117.7 (3) | C23B—C22B—C21B | 118.1 (3) |
C23A—C22A—H22A | 121.1 | C23B—C22B—H22B | 121.0 |
C21A—C22A—H22A | 121.1 | C21B—C22B—H22B | 121.0 |
C22A—C23A—C24A | 122.9 (3) | C22B—C23B—C24B | 122.9 (3) |
C22A—C23A—N6A | 119.6 (3) | C22B—C23B—N6B | 119.3 (3) |
C24A—C23A—N6A | 117.4 (3) | C24B—C23B—N6B | 117.8 (3) |
C23A—C24A—C19A | 119.1 (3) | C19B—C24B—C23B | 118.1 (3) |
C23A—C24A—H24A | 120.5 | C19B—C24B—H24B | 120.9 |
C19A—C24A—H24A | 120.5 | C23B—C24B—H24B | 120.9 |
C15A—C25A—H25A | 109.5 | C15B—C25B—H25D | 109.5 |
C15A—C25A—H25B | 109.5 | C15B—C25B—H25E | 109.5 |
H25A—C25A—H25B | 109.5 | H25D—C25B—H25E | 109.5 |
C15A—C25A—H25C | 109.5 | C15B—C25B—H25F | 109.5 |
H25A—C25A—H25C | 109.5 | H25D—C25B—H25F | 109.5 |
H25B—C25A—H25C | 109.5 | H25E—C25B—H25F | 109.5 |
N5A—C26A—C17A | 177.2 (3) | N5B—C26B—C17B | 178.0 (3) |
C12A—N1A—N2A—C13A | −0.5 (3) | C12B—N1B—N2B—C13B | 0.4 (3) |
C10A—C1A—C2A—C3A | −1.2 (5) | C10B—C1B—C2B—C3B | 178.3 (3) |
C1A—C2A—C3A—C4A | −176.6 (3) | C10B—C1B—C2B—C7B | −0.8 (4) |
C1A—C2A—C3A—C8A | 1.1 (4) | C1B—C2B—C3B—C4B | −179.9 (3) |
C2A—C3A—C4A—C5A | 178.8 (3) | C7B—C2B—C3B—C4B | −0.8 (4) |
C8A—C3A—C4A—C5A | 1.1 (4) | C2B—C3B—C4B—C5B | −0.7 (5) |
C3A—C4A—C5A—C6A | 1.7 (5) | C3B—C4B—C5B—C6B | 1.1 (5) |
C4A—C5A—C6A—C7A | −2.5 (5) | C4B—C5B—C6B—C7B | −0.1 (5) |
C5A—C6A—C7A—C8A | 0.5 (5) | C5B—C6B—C7B—C8B | 178.8 (3) |
C6A—C7A—C8A—C9A | −178.0 (3) | C5B—C6B—C7B—C2B | −1.4 (4) |
C6A—C7A—C8A—C3A | 2.3 (4) | C3B—C2B—C7B—C8B | −178.4 (3) |
C4A—C3A—C8A—C7A | −3.1 (4) | C1B—C2B—C7B—C8B | 0.7 (4) |
C2A—C3A—C8A—C7A | 179.1 (3) | C3B—C2B—C7B—C6B | 1.9 (4) |
C4A—C3A—C8A—C9A | 177.2 (3) | C1B—C2B—C7B—C6B | −179.0 (3) |
C2A—C3A—C8A—C9A | −0.6 (4) | C6B—C7B—C8B—C9B | 179.1 (3) |
C7A—C8A—C9A—C10A | −179.5 (3) | C2B—C7B—C8B—C9B | −0.6 (4) |
C3A—C8A—C9A—C10A | 0.1 (4) | C7B—C8B—C9B—C10B | 0.5 (5) |
C8A—C9A—C10A—O1A | 179.7 (3) | C2B—C1B—C10B—O1B | 179.9 (3) |
C8A—C9A—C10A—C1A | −0.2 (4) | C2B—C1B—C10B—C9B | 0.7 (4) |
C11A—O1A—C10A—C9A | −3.9 (4) | C11B—O1B—C10B—C1B | 12.9 (4) |
C11A—O1A—C10A—C1A | 176.0 (3) | C11B—O1B—C10B—C9B | −167.9 (3) |
C2A—C1A—C10A—C9A | 0.8 (5) | C8B—C9B—C10B—C1B | −0.6 (4) |
C2A—C1A—C10A—O1A | −179.2 (3) | C8B—C9B—C10B—O1B | −179.8 (3) |
C10A—O1A—C11A—C12A | −179.1 (2) | C10B—O1B—C11B—C12B | −176.4 (2) |
N2A—N1A—C12A—O2A | 1.3 (3) | N2B—N1B—C12B—O2B | −0.3 (3) |
N2A—N1A—C12A—C11A | −174.9 (3) | N2B—N1B—C12B—C11B | 179.0 (3) |
C13A—O2A—C12A—N1A | −1.5 (3) | C13B—O2B—C12B—N1B | 0.2 (3) |
C13A—O2A—C12A—C11A | 175.1 (3) | C13B—O2B—C12B—C11B | −179.3 (2) |
O1A—C11A—C12A—N1A | −136.7 (3) | O1B—C11B—C12B—N1B | −8.7 (4) |
O1A—C11A—C12A—O2A | 47.3 (4) | O1B—C11B—C12B—O2B | 170.6 (2) |
N1A—N2A—C13A—O2A | −0.4 (3) | N1B—N2B—C13B—O2B | −0.3 (3) |
N1A—N2A—C13A—S1A | −178.7 (2) | N1B—N2B—C13B—S1B | −179.0 (2) |
C12A—O2A—C13A—N2A | 1.1 (3) | C12B—O2B—C13B—N2B | 0.1 (3) |
C12A—O2A—C13A—S1A | 179.6 (2) | C12B—O2B—C13B—S1B | 179.02 (19) |
C14A—S1A—C13A—N2A | 36.7 (3) | C14B—S1B—C13B—N2B | −2.7 (3) |
C14A—S1A—C13A—O2A | −141.5 (2) | C14B—S1B—C13B—O2B | 178.5 (2) |
C13A—S1A—C14A—C18A | 94.8 (2) | C13B—S1B—C14B—C18B | 98.0 (2) |
C13A—S1A—C14A—C15A | −89.0 (2) | C13B—S1B—C14B—C15B | −83.0 (2) |
C16A—N3A—C15A—C14A | 3.2 (4) | C16B—N3B—C15B—C14B | 2.7 (4) |
C16A—N3A—C15A—C25A | −177.4 (3) | C16B—N3B—C15B—C25B | −177.3 (3) |
C18A—C14A—C15A—N3A | −0.6 (4) | C18B—C14B—C15B—N3B | −4.4 (4) |
S1A—C14A—C15A—N3A | −176.8 (2) | S1B—C14B—C15B—N3B | 176.5 (2) |
C18A—C14A—C15A—C25A | 180.0 (3) | C18B—C14B—C15B—C25B | 175.7 (3) |
S1A—C14A—C15A—C25A | 3.8 (4) | S1B—C14B—C15B—C25B | −3.4 (4) |
C15A—N3A—C16A—N4A | 178.0 (3) | C15B—N3B—C16B—N4B | −177.0 (3) |
C15A—N3A—C16A—C17A | −2.3 (4) | C15B—N3B—C16B—C17B | 3.1 (4) |
N4A—C16A—C17A—C18A | 178.5 (3) | N4B—C16B—C17B—C18B | 172.8 (3) |
N3A—C16A—C17A—C18A | −1.2 (4) | N3B—C16B—C17B—C18B | −7.3 (4) |
N4A—C16A—C17A—C26A | −0.6 (4) | N4B—C16B—C17B—C26B | −1.8 (4) |
N3A—C16A—C17A—C26A | 179.7 (3) | N3B—C16B—C17B—C26B | 178.2 (3) |
C16A—C17A—C18A—C14A | 3.7 (4) | C15B—C14B—C18B—C17B | 0.1 (4) |
C26A—C17A—C18A—C14A | −177.2 (3) | S1B—C14B—C18B—C17B | 179.2 (2) |
C16A—C17A—C18A—C19A | −171.9 (2) | C15B—C14B—C18B—C19B | 177.7 (3) |
C26A—C17A—C18A—C19A | 7.2 (4) | S1B—C14B—C18B—C19B | −3.2 (4) |
C15A—C14A—C18A—C17A | −2.9 (4) | C16B—C17B—C18B—C14B | 5.5 (4) |
S1A—C14A—C18A—C17A | 173.3 (2) | C26B—C17B—C18B—C14B | 180.0 (3) |
C15A—C14A—C18A—C19A | 172.7 (3) | C16B—C17B—C18B—C19B | −172.3 (3) |
S1A—C14A—C18A—C19A | −11.2 (4) | C26B—C17B—C18B—C19B | 2.2 (4) |
C17A—C18A—C19A—C24A | 111.4 (3) | C14B—C18B—C19B—C24B | −86.1 (3) |
C14A—C18A—C19A—C24A | −64.0 (4) | C17B—C18B—C19B—C24B | 91.5 (3) |
C17A—C18A—C19A—C20A | −64.7 (4) | C14B—C18B—C19B—C20B | 97.7 (3) |
C14A—C18A—C19A—C20A | 119.8 (3) | C17B—C18B—C19B—C20B | −84.6 (3) |
C24A—C19A—C20A—C21A | 0.8 (4) | C24B—C19B—C20B—C21B | 0.6 (4) |
C18A—C19A—C20A—C21A | 176.9 (3) | C18B—C19B—C20B—C21B | 176.7 (3) |
C19A—C20A—C21A—C22A | −0.9 (5) | C19B—C20B—C21B—C22B | −1.2 (5) |
C20A—C21A—C22A—C23A | 0.8 (5) | C20B—C21B—C22B—C23B | 0.4 (5) |
C21A—C22A—C23A—C24A | −0.5 (5) | C21B—C22B—C23B—C24B | 1.2 (5) |
C21A—C22A—C23A—N6A | −177.4 (3) | C21B—C22B—C23B—N6B | −177.0 (3) |
O3A—N6A—C23A—C22A | −1.7 (5) | O4B—N6B—C23B—C22B | −173.0 (3) |
O4A—N6A—C23A—C22A | 177.7 (3) | O3B—N6B—C23B—C22B | 8.5 (4) |
O3A—N6A—C23A—C24A | −178.8 (3) | O4B—N6B—C23B—C24B | 8.7 (4) |
O4A—N6A—C23A—C24A | 0.6 (4) | O3B—N6B—C23B—C24B | −169.7 (3) |
C22A—C23A—C24A—C19A | 0.4 (5) | C20B—C19B—C24B—C23B | 0.8 (4) |
N6A—C23A—C24A—C19A | 177.3 (3) | C18B—C19B—C24B—C23B | −175.3 (3) |
C20A—C19A—C24A—C23A | −0.5 (4) | C22B—C23B—C24B—C19B | −1.8 (4) |
C18A—C19A—C24A—C23A | −176.7 (3) | N6B—C23B—C24B—C19B | 176.4 (3) |
Cg1, Cg2, Cg3 and Cg4 are the centroids of the C1B/C2B/C7B–C10B, C2B–C7B, C1A/C2A/C3A/C8A–C10A and O2A/C12A/N1A/N2A/C13A rings, respecively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4A—H2NA···N5Bi | 0.86 (4) | 2.21 (4) | 3.025 (4) | 158 (3) |
N4A—H1NA···N3Bii | 0.84 (4) | 2.23 (4) | 3.056 (4) | 165 (4) |
N4B—H2NB···N3Aii | 0.92 (4) | 2.08 (4) | 2.991 (4) | 174 (4) |
N4B—H1NB···N5Ai | 0.85 (5) | 2.34 (5) | 3.157 (4) | 162 (4) |
C11A—H11B···O1Biii | 0.99 | 2.36 | 3.332 (4) | 168 |
C11B—H11C···O3Biv | 0.99 | 2.60 | 3.173 (4) | 117 |
C21B—H21B···N2Av | 0.95 | 2.54 | 3.333 (4) | 142 |
C22A—H22A···N1Bvi | 0.95 | 2.60 | 3.540 (4) | 169 |
C2A—H2AA···Cg1vi | 0.95 | 2.78 | 3.492 (3) | 133 |
C4A—H4AA···Cg2vi | 0.95 | 2.62 | 3.457 (4) | 147 |
C7A—H7AA···Cg1iii | 0.95 | 2.80 | 3.557 (3) | 138 |
C3B—H3BA···Cg3vii | 0.95 | 2.67 | 3.440 (3) | 138 |
C8B—H8BA···Cg3viii | 0.95 | 2.83 | 3.599 (3) | 139 |
C24A—H24A···Cg4 | 0.95 | 2.92 | 3.652 (3) | 135 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x, −y+2, −z; (iii) x, y−1, z; (iv) x−1, y, z; (v) x+1, y, z; (vi) x+1, y−1, z; (vii) −x, −y+1, −z+1; (viii) −x, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C26H18N6O4S |
Mr | 510.52 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.6132 (9), 9.8928 (10), 25.724 (2) |
α, β, γ (°) | 83.215 (2), 84.102 (2), 72.564 (2) |
V (Å3) | 2311.8 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.23 × 0.19 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.958, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9469, 9469, 8293 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.056, 0.164, 1.20 |
No. of reflections | 9469 |
No. of parameters | 686 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.32, −0.36 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1, Cg2, Cg3 and Cg4 are the centroids of the C1B/C2B/C7B–C10B, C2B–C7B, C1A/C2A/C3A/C8A–C10A and O2A/C12A/N1A/N2A/C13A rings, respecively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4A—H2NA···N5Bi | 0.86 (4) | 2.21 (4) | 3.025 (4) | 158 (3) |
N4A—H1NA···N3Bii | 0.84 (4) | 2.23 (4) | 3.056 (4) | 165 (4) |
N4B—H2NB···N3Aii | 0.92 (4) | 2.08 (4) | 2.991 (4) | 174 (4) |
N4B—H1NB···N5Ai | 0.85 (5) | 2.34 (5) | 3.157 (4) | 162 (4) |
C11A—H11B···O1Biii | 0.99 | 2.36 | 3.332 (4) | 168 |
C11B—H11C···O3Biv | 0.99 | 2.60 | 3.173 (4) | 117 |
C21B—H21B···N2Av | 0.95 | 2.54 | 3.333 (4) | 142 |
C22A—H22A···N1Bvi | 0.95 | 2.60 | 3.540 (4) | 169 |
C2A—H2AA···Cg1vi | 0.95 | 2.78 | 3.492 (3) | 133 |
C4A—H4AA···Cg2vi | 0.95 | 2.62 | 3.457 (4) | 147 |
C7A—H7AA···Cg1iii | 0.95 | 2.80 | 3.557 (3) | 138 |
C3B—H3BA···Cg3vii | 0.95 | 2.67 | 3.440 (3) | 138 |
C8B—H8BA···Cg3viii | 0.95 | 2.83 | 3.599 (3) | 139 |
C24A—H24A···Cg4 | 0.95 | 2.92 | 3.652 (3) | 135 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x, −y+2, −z; (iii) x, y−1, z; (iv) x−1, y, z; (v) x+1, y, z; (vi) x+1, y−1, z; (vii) −x, −y+1, −z+1; (viii) −x, −y+2, −z+1. |
Acknowledgements
The authors thank Universiti Sains Malaysia (USM) for the RUC grant (Structure Determination of 50 kDa Outer Membrane Proteins From S.typhi By X-ray Protein Crystallography, No. 1001/PSKBP/8630013) and APEX DE2012 grant (No. 1002/PFIZIK/910323). CSC thanks Universiti Sains Malaysia for a postdoctoral research fellowship. PP thanks the UGC, New Delhi, for the award of a junior research fellowship.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridine and its derivatives are of commercial interest and find application in medicinal drugs and in agricultural products such as herbicides,insecticides, fungicides, and plant growth regulators (picolines, lutidines, Timoprazole, and omeprazole). Pyridine derivatives have a wide range of biological activities being used as fungicidal, antibacterial, antifungal (Youngdale, 1980, 1982; Todd, 1970a,b), antimycotic (Lohaus et al., 1968, 1970) and antidepressant agents (Gachet et al., 1995), as well as thienopyridines being used as antithrombotic agents (Yao et al., 1994; Umemura et al., 1995) against platelet aggregation. Compounds containing a 1,3,4-oxadiazole ring have been reported to possess a broad spectrum of biological activities including insecticidal, antibacterial, anticancer, and anti-inflammatory (Jin et al., 2006; Bhandari et al., 2008; Krasovskii et al., 2000) as well as antimycobacterial, analgesic, antipyretic and anticonvulsant properties (Mishra et al., 1995; Suman et al., 1979). The above observations prompted us to synthesize the title compound containing oxadiazole and amino pyridine carbonitrile groups and substituted pyridine scaffolds to determine its crystal structure.
The asymmetric unit of the title compound consists of two crystallographically independent, 5-(5-((naphthalen-6-yloxy)methyl)-1,3,4-oxadiazol-2-ylthio) -2-amino-6-methyl-4-(3-nitrophenyl)pyridine-3-carbonitrile molecules (A & B), as shown in Fig. 1. The bond lengths and angles of molecules A and B agree with each other and are within normal ranges for bond lengths (Allen et al., 1987). The dihedral angles between pyridine rings (N3A/C14A–C18A)/ (N3B/C14B–C18B) and the benzene rings (C19A–C24A)/(C19B–C24B) are 65.53 (13) and 87.67 (13) Å, respectively. The central 1,3,4-oxadiazole ring system in both the molecules is essentially planar with maximum deviations of 0.007 (3) and 0.002 (3) %A respectively.
In the crystal structure (Fig. 2), molecule A is paired with molecule B via an N4—H···N3ii hydrogen bonds (symmetry code in Table 1), involving the 4-amino group and the pyridine N1 atom and it is paired with another molecule of B through a pair N4—H···N5i hydrogen bonds (symmetry code in Table 1), involving the 4-amino group and cyano N5 atom, forming R22(8) and R22(12) (Bernstein et al., 1995) ring motifs. These hydrogen-bonded ABAB pairs lead to a extended ribbon structure. Theese ribbon are linked by weak C—H···N, C—H···O hydrogen bonds, resulting in a three-dimensional network. The crystal structure is further stabilized by C—H···π interactions (Table 1).