organic compounds
2-Amino-6-methylpyridinium 4-hydroxybenzoate
aDepartment of Physics, M.A.M. School of Engineering, Siruganur, Tiruchirappalli 621 105, India, bCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and cDepartment of Physics, Anna University, BIT Campus, Tiruchirappalli 620 024, India
*Correspondence e-mail: mnpsy2004@yahoo.com
In the title molecular salt, C6H9N2+·C7H5O3−, the dihedral angle between the benzene ring and the CO2 group in the anion is 6.1 (2)°. In the crystal, the cation and anion are linked by N—H⋯O and C—H⋯O hydrogen bonds, and the anions are connected by O—H⋯O hydrogen bonds, forming a three-dimensional network.
Related literature
For general background to methylpyridinium derivatives, see: Blessing (1986); Brahadeeswaran et al. (2006); Brown (1976); Kvenvolden et al. (1971); Tomaru et al. (1991).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813007939/lx2273sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813007939/lx2273Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813007939/lx2273Isup3.cml
Methanol solutions of 2–amino–6–methylpyridine (54 mg) and 4–hydroxybenzoic acid (69 mg) were mixed together and stirred for about 1 h to get a homogeneous mixture. The resulting solution was allowed to evaporate at 303 K slowly in a water bath which has a temperature accuracy of ± 0.01° C at ambient atmosphere. Brownish crystals with developed morphology of title compound were obtained after 15 days.
Especially about N—H & O—H according to RES. H atoms were positioned geometrically (N—H = 0.85–0.90 Å, O—H = 0.95–0.97 and C—H = 0.93–0.98Å) and allowed to ride on their parent atoms, with Uiso(H) =1.5Ueq(C) for methyl H 1.2Ueq(C) for other H atoms.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms are presented as small spheres of arbitrary radius. | |
Fig. 2. A view of the N—H···O, C—H···O and O—H···O hydrogen bonds (dotted lines) in the crystal structure of the title compound. H atoms not participating in hydrogen–bonding were omitted for clarity. [Symmetry code: (i) - x + 1, - y + 2, - z + 1; (ii) - x + 1 , y - 1/2, - z + 1/2; (iii) - x + 2, y - 1/2, - z + 3/2; (iv) - x + 2, - y + 1, - z + 1; (v) - x + 1, - y + 2, - z + 1; (vi) - x + 1, y + 1/2, - z + 1/2; (vii) - x + 2, y + 1/2, - z + 3/2.] |
C6H9N2+·C7H5O3− | F(000) = 520 |
Mr = 246.26 | Dx = 1.334 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2671 reflections |
a = 11.9488 (3) Å | θ = 1.9–28.4° |
b = 9.2952 (3) Å | µ = 0.10 mm−1 |
c = 12.4067 (3) Å | T = 293 K |
β = 117.116 (2)° | Block, white crystalline |
V = 1226.51 (6) Å3 | 0.20 × 0.18 × 0.17 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 3084 independent reflections |
Radiation source: fine-focus sealed tube | 2471 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ω and ϕ scans | θmax = 28.4°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −16→15 |
Tmin = 0.981, Tmax = 0.984 | k = −10→12 |
11403 measured reflections | l = −16→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0582P)2 + 0.2532P] where P = (Fo2 + 2Fc2)/3 |
3084 reflections | (Δ/σ)max < 0.001 |
168 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C6H9N2+·C7H5O3− | V = 1226.51 (6) Å3 |
Mr = 246.26 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.9488 (3) Å | µ = 0.10 mm−1 |
b = 9.2952 (3) Å | T = 293 K |
c = 12.4067 (3) Å | 0.20 × 0.18 × 0.17 mm |
β = 117.116 (2)° |
Bruker SMART APEXII CCD diffractometer | 3084 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2471 reflections with I > 2σ(I) |
Tmin = 0.981, Tmax = 0.984 | Rint = 0.023 |
11403 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.122 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.25 e Å−3 |
3084 reflections | Δρmin = −0.20 e Å−3 |
168 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C2 | 0.63520 (11) | 0.65353 (14) | 0.57200 (11) | 0.0399 (3) | |
C3 | 0.72343 (13) | 0.56067 (17) | 0.57177 (14) | 0.0528 (3) | |
H3 | 0.7947 | 0.5393 | 0.6434 | 0.063* | |
C4 | 0.70557 (14) | 0.49803 (16) | 0.46291 (15) | 0.0562 (4) | |
H4 | 0.7652 | 0.4342 | 0.4623 | 0.067* | |
C5 | 0.60208 (14) | 0.52912 (14) | 0.35780 (13) | 0.0486 (3) | |
H5 | 0.5912 | 0.4868 | 0.2857 | 0.058* | |
C6 | 0.51139 (12) | 0.62547 (13) | 0.35806 (11) | 0.0384 (3) | |
C7 | 0.64299 (12) | 0.72809 (17) | 0.68095 (12) | 0.0490 (3) | |
H7A | 0.5776 | 0.6934 | 0.6988 | 0.074* | |
H7B | 0.6331 | 0.8298 | 0.6660 | 0.074* | |
H7C | 0.7234 | 0.7094 | 0.7485 | 0.074* | |
C8 | 0.81847 (10) | 0.98339 (13) | 0.59471 (10) | 0.0370 (3) | |
C9 | 0.90757 (11) | 0.92379 (15) | 0.70239 (11) | 0.0415 (3) | |
H9 | 0.9070 | 0.9489 | 0.7747 | 0.050* | |
C10 | 0.99711 (12) | 0.82801 (15) | 0.70462 (11) | 0.0433 (3) | |
H10 | 1.0556 | 0.7891 | 0.7778 | 0.052* | |
C11 | 0.99954 (11) | 0.79001 (15) | 0.59772 (11) | 0.0435 (3) | |
C12 | 0.91149 (14) | 0.84879 (19) | 0.48968 (12) | 0.0592 (4) | |
H12 | 0.9124 | 0.8242 | 0.4175 | 0.071* | |
C13 | 0.82247 (13) | 0.94363 (18) | 0.48875 (12) | 0.0542 (4) | |
H13 | 0.7637 | 0.9819 | 0.4154 | 0.065* | |
C14 | 0.72117 (10) | 1.08629 (13) | 0.59372 (10) | 0.0369 (3) | |
N1 | 0.53173 (9) | 0.68267 (11) | 0.46589 (8) | 0.0359 (2) | |
H1 | 0.4763 | 0.7405 | 0.4674 | 0.043* | |
N2 | 0.40790 (11) | 0.66254 (13) | 0.26020 (9) | 0.0482 (3) | |
H2A | 0.3555 | 0.7216 | 0.2661 | 0.058* | |
H2B | 0.3930 | 0.6276 | 0.1908 | 0.058* | |
O1 | 0.63458 (8) | 1.12882 (11) | 0.49535 (8) | 0.0503 (3) | |
O2 | 0.73063 (8) | 1.12516 (11) | 0.69528 (8) | 0.0474 (2) | |
O3 | 1.08494 (10) | 0.69729 (13) | 0.59355 (10) | 0.0598 (3) | |
H3A | 1.145 (2) | 0.672 (2) | 0.675 (2) | 0.089 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0376 (6) | 0.0431 (7) | 0.0414 (6) | −0.0007 (5) | 0.0200 (5) | 0.0035 (5) |
C3 | 0.0437 (7) | 0.0584 (9) | 0.0572 (8) | 0.0125 (6) | 0.0239 (6) | 0.0110 (7) |
C4 | 0.0607 (8) | 0.0492 (8) | 0.0751 (10) | 0.0178 (7) | 0.0453 (8) | 0.0095 (7) |
C5 | 0.0657 (8) | 0.0392 (7) | 0.0571 (8) | 0.0039 (6) | 0.0422 (7) | −0.0004 (6) |
C6 | 0.0463 (6) | 0.0351 (6) | 0.0416 (6) | −0.0035 (5) | 0.0269 (5) | −0.0008 (5) |
C7 | 0.0444 (7) | 0.0597 (8) | 0.0395 (6) | −0.0010 (6) | 0.0162 (5) | −0.0015 (6) |
C8 | 0.0327 (5) | 0.0395 (6) | 0.0367 (6) | 0.0008 (5) | 0.0140 (5) | −0.0002 (5) |
C9 | 0.0417 (6) | 0.0474 (7) | 0.0345 (6) | 0.0047 (5) | 0.0165 (5) | 0.0002 (5) |
C10 | 0.0390 (6) | 0.0483 (7) | 0.0358 (6) | 0.0072 (5) | 0.0110 (5) | 0.0041 (5) |
C11 | 0.0372 (6) | 0.0472 (7) | 0.0430 (6) | 0.0062 (5) | 0.0156 (5) | −0.0027 (5) |
C12 | 0.0563 (8) | 0.0815 (11) | 0.0350 (6) | 0.0240 (8) | 0.0167 (6) | −0.0031 (7) |
C13 | 0.0485 (7) | 0.0720 (10) | 0.0339 (6) | 0.0205 (7) | 0.0117 (5) | 0.0031 (6) |
C14 | 0.0328 (5) | 0.0392 (6) | 0.0391 (6) | −0.0015 (5) | 0.0168 (5) | 0.0015 (5) |
N1 | 0.0373 (5) | 0.0366 (5) | 0.0379 (5) | 0.0027 (4) | 0.0208 (4) | 0.0000 (4) |
N2 | 0.0516 (6) | 0.0566 (7) | 0.0380 (5) | 0.0035 (5) | 0.0217 (5) | −0.0052 (5) |
O1 | 0.0431 (5) | 0.0630 (6) | 0.0413 (5) | 0.0166 (4) | 0.0162 (4) | 0.0076 (4) |
O2 | 0.0415 (5) | 0.0576 (6) | 0.0425 (5) | 0.0060 (4) | 0.0188 (4) | −0.0047 (4) |
O3 | 0.0539 (6) | 0.0729 (7) | 0.0498 (6) | 0.0261 (5) | 0.0212 (5) | 0.0006 (5) |
C2—N1 | 1.3606 (15) | C8—C14 | 1.5013 (16) |
C2—C3 | 1.3634 (18) | C9—C10 | 1.3825 (17) |
C2—C7 | 1.4837 (18) | C9—H9 | 0.9300 |
C3—C4 | 1.395 (2) | C10—C11 | 1.3855 (17) |
C3—H3 | 0.9300 | C10—H10 | 0.9300 |
C4—C5 | 1.358 (2) | C11—O3 | 1.3546 (15) |
C4—H4 | 0.9300 | C11—C12 | 1.3844 (18) |
C5—C6 | 1.4070 (17) | C12—C13 | 1.3775 (19) |
C5—H5 | 0.9300 | C12—H12 | 0.9300 |
C6—N2 | 1.3241 (16) | C13—H13 | 0.9300 |
C6—N1 | 1.3547 (15) | C14—O1 | 1.2511 (14) |
C7—H7A | 0.9600 | C14—O2 | 1.2653 (14) |
C7—H7B | 0.9600 | N1—H1 | 0.8600 |
C7—H7C | 0.9600 | N2—H2A | 0.8600 |
C8—C13 | 1.3873 (17) | N2—H2B | 0.8600 |
C8—C9 | 1.3887 (16) | O3—H3A | 0.97 (2) |
N1—C2—C3 | 119.11 (12) | C10—C9—H9 | 119.2 |
N1—C2—C7 | 116.13 (11) | C8—C9—H9 | 119.2 |
C3—C2—C7 | 124.75 (12) | C9—C10—C11 | 119.92 (11) |
C2—C3—C4 | 119.27 (13) | C9—C10—H10 | 120.0 |
C2—C3—H3 | 120.4 | C11—C10—H10 | 120.0 |
C4—C3—H3 | 120.4 | O3—C11—C12 | 117.87 (12) |
C5—C4—C3 | 120.77 (12) | O3—C11—C10 | 122.92 (11) |
C5—C4—H4 | 119.6 | C12—C11—C10 | 119.21 (12) |
C3—C4—H4 | 119.6 | C13—C12—C11 | 120.25 (12) |
C4—C5—C6 | 119.91 (12) | C13—C12—H12 | 119.9 |
C4—C5—H5 | 120.0 | C11—C12—H12 | 119.9 |
C6—C5—H5 | 120.0 | C12—C13—C8 | 121.50 (12) |
N2—C6—N1 | 118.40 (11) | C12—C13—H13 | 119.2 |
N2—C6—C5 | 124.19 (12) | C8—C13—H13 | 119.2 |
N1—C6—C5 | 117.41 (12) | O1—C14—O2 | 122.68 (11) |
C2—C7—H7A | 109.5 | O1—C14—C8 | 120.15 (11) |
C2—C7—H7B | 109.5 | O2—C14—C8 | 117.16 (10) |
H7A—C7—H7B | 109.5 | C6—N1—C2 | 123.52 (10) |
C2—C7—H7C | 109.5 | C6—N1—H1 | 118.2 |
H7A—C7—H7C | 109.5 | C2—N1—H1 | 118.2 |
H7B—C7—H7C | 109.5 | C6—N2—H2A | 120.0 |
C13—C8—C9 | 117.58 (11) | C6—N2—H2B | 120.0 |
C13—C8—C14 | 121.54 (11) | H2A—N2—H2B | 120.0 |
C9—C8—C14 | 120.88 (11) | C11—O3—H3A | 109.1 (12) |
C10—C9—C8 | 121.54 (11) | ||
N1—C2—C3—C4 | 0.1 (2) | C10—C11—C12—C13 | −0.1 (3) |
C7—C2—C3—C4 | −179.57 (13) | C11—C12—C13—C8 | 0.3 (3) |
C2—C3—C4—C5 | 0.3 (2) | C9—C8—C13—C12 | −0.1 (2) |
C3—C4—C5—C6 | 0.0 (2) | C14—C8—C13—C12 | −179.76 (14) |
C4—C5—C6—N2 | 179.79 (13) | C13—C8—C14—O1 | 6.19 (19) |
C4—C5—C6—N1 | −0.64 (19) | C9—C8—C14—O1 | −173.41 (12) |
C13—C8—C9—C10 | −0.1 (2) | C13—C8—C14—O2 | −174.60 (12) |
C14—C8—C9—C10 | 179.48 (12) | C9—C8—C14—O2 | 5.80 (18) |
C8—C9—C10—C11 | 0.3 (2) | N2—C6—N1—C2 | −179.31 (11) |
C9—C10—C11—O3 | 179.75 (13) | C5—C6—N1—C2 | 1.10 (17) |
C9—C10—C11—C12 | −0.1 (2) | C3—C2—N1—C6 | −0.82 (18) |
O3—C11—C12—C13 | 179.97 (15) | C7—C2—N1—C6 | 178.85 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 2.00 | 2.8499 (13) | 169 |
N2—H2A···O2i | 0.86 | 1.94 | 2.7879 (14) | 168 |
N2—H2B···O1ii | 0.86 | 2.18 | 2.9902 (14) | 157 |
O3—H3A···O2iii | 0.97 (2) | 1.67 (2) | 2.6281 (14) | 168.5 (19) |
C4—H4···O3iv | 0.93 | 2.51 | 3.4134 (17) | 163 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, y−1/2, −z+3/2; (iv) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C6H9N2+·C7H5O3− |
Mr | 246.26 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 11.9488 (3), 9.2952 (3), 12.4067 (3) |
β (°) | 117.116 (2) |
V (Å3) | 1226.51 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.18 × 0.17 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.981, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11403, 3084, 2471 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.670 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.122, 1.04 |
No. of reflections | 3084 |
No. of parameters | 168 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.20 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and DIAMOND (Brandenburg, 1998), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.86 | 2.00 | 2.8499 (13) | 169.2 |
N2—H2A···O2i | 0.86 | 1.94 | 2.7879 (14) | 167.8 |
N2—H2B···O1ii | 0.86 | 2.18 | 2.9902 (14) | 157.2 |
O3—H3A···O2iii | 0.97 (2) | 1.67 (2) | 2.6281 (14) | 168.5 (19) |
C4—H4···O3iv | 0.93 | 2.51 | 3.4134 (17) | 163.3 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, y−1/2, −z+3/2; (iv) −x+2, −y+1, −z+1. |
Acknowledgements
VK and SB are grateful to the Department of Science and Technology (DST), New Delhi, India, for financial support through grant SR/FTP/PS-53/2007 Dt. 22–08-08.
References
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Pyridine heterocycles and their derivatives are present in many large molecules having photo chemical, electro chemical and catalytic applications. Pyridine derivatives possess nonlinear optical (NLO) properties(Tomaru et al., 1991). 4–N,N–dimethylamino–4'–N'–methyl stilbazolium tosylate (DAST) is used in generating and detecting terahertz (THz) frequencies (Brahadeeswaran et al.,2006). Carboxylic acids are believed to have existed in the prebiotic earth (Kvenvolden et al., 1971) and form aggregation patterns. An attempt is made to solve the pyridine based crystal structures to explore the NLO behaviour.
The crystal structure of the title compound (Fig.1) consists of aminomethylpyridinium cation and hydroxybenzoate anion connected via N—H···O & C—H···O hydrogen bonds (Blessing,1986; Brown, 1976). The pyridinium ring is essentially planar, with a maximum deviation of -0.005 (1) Å for atom N1. The dihedral angle between the pyridinium ring in the cation and the benzene ring in the anion is 78.32 (7)°.
In the crystal structure (Fig. 2), the cation and anion are linked by N—H···O and C—H···O hydrogen bonds (Table 1), and the anions are connected by O—H···O hydrogen bonds (Table 1), forming a three–dimensional network.