organic compounds
2-(4-Bromoanilino)-6-(4-chlorophenyl)-5-methoxycarbonyl-4-methyl-3,6-dihydropyrimidin-1-ium chloride
aDepartment of Biotechnology and Food Technology, Durban University of Technology, Durban 4001, South Africa, and bEquipe Chimie du Solide et Matériaux, UMR 6226 Institut des Sciences, Université de Rennes 1, Campus de Beaulieu, Avenue du Général Leclerc, 35042 Rennes cedex, France
*Correspondence e-mail: katharigattav@dut.ac.za, nksusa@gmail.com
In the title molecular salt, C19H18BrClN3O2+·Cl−, the dihedral angles between the pyrimidine ring and the chlorobenzene and bromobenzene rings are 72.4 (2) and 45.5 (2)°, respectively. The dihedral angle between the chlorobenzene and bromobenzene rings is 27.5 (2)°. The conformation of the molecule is stabilized by an intramolecular C—H⋯O interaction. In the crystal, the anion and cation are linked by an N—H⋯Cl hydrogen bond. Pairs of weak C—H⋯O and C—H⋯Cl hydrogen bonds form inversion dimers. Further N—H⋯Cl hydrogen bonds form R21(6) motifs and link the dimers into chains along [101]. Br⋯Cl short contacts [3.482 (2) Å] interlink the hydrogen-bonded chains along the b-axis direction.
Related literature
For a study of chloride salts of dihydropyrimidine derivatives and their anti-tubercular activity, see: Venugopala, Nayak, Pillay et al. (2012). For the crystal structures of dihydropyrimidine derivatives, see: Venugopala, Nayak & Odhav (2012). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).
Supporting information
10.1107/S1600536813006296/pv2621sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813006296/pv2621Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813006296/pv2621Isup3.cml
A mixture of methyl-2-chloro-4-(4-chlorophenyl)-6-methyl-1,4- dihydropyrimidine-5-carboxylate (1 mmol) and 4-bromoaniline (1 mmol) in 2-propanol (5 mL) was refluxed for 16 h. The reaction was monitored by TLC. The reaction medium was cooled to room temperature and the product was filtered, washed with cold 2-propanol and dried to obtain the crude product. The product was purified by recrystallization using ethanol to yield 66% yield of product which was pale yellow amorphous solid (m.p. 500 (2) K). Crystals suitable for single-crystal X-ray analysis were obtained using acetone as a solvent using slow evaporation at room temperature.
All H atoms were positioned geometrically with N—H = 0.88 Å, C—H = 0.95–1.00 Å and refined using a riding model with Uiso(H) = 1.2 Ueq(C/N)except for the methyl group where Uiso(H) = 1.5 Ueq(C).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009) and PARST (Nardelli, 1995).C19H18BrClN3O2+·Cl− | F(000) = 952 |
Mr = 471.17 | Dx = 1.558 Mg m−3 |
Monoclinic, P21/n | Melting point: 500(2) K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 13.2691 (15) Å | Cell parameters from 650 reflections |
b = 11.0965 (12) Å | θ = 1.7–27.9° |
c = 14.9545 (17) Å | µ = 2.33 mm−1 |
β = 114.181 (3)° | T = 100 K |
V = 2008.7 (4) Å3 | Block, colorless |
Z = 4 | 0.08 × 0.05 × 0.03 mm |
Bruker Kappa DUO APEXII diffractometer | 3919 independent reflections |
Radiation source: fine-focus sealed tube | 2511 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.067 |
0.5° ϕ scans and ω scans | θmax = 26.0°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −16→16 |
Tmin = 0.835, Tmax = 0.933 | k = −13→13 |
10242 measured reflections | l = −18→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 0.95 | w = 1/[σ2(Fo2) + (0.0403P)2] where P = (Fo2 + 2Fc2)/3 |
3919 reflections | (Δ/σ)max < 0.001 |
246 parameters | Δρmax = 0.42 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
C19H18BrClN3O2+·Cl− | V = 2008.7 (4) Å3 |
Mr = 471.17 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 13.2691 (15) Å | µ = 2.33 mm−1 |
b = 11.0965 (12) Å | T = 100 K |
c = 14.9545 (17) Å | 0.08 × 0.05 × 0.03 mm |
β = 114.181 (3)° |
Bruker Kappa DUO APEXII diffractometer | 3919 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2511 reflections with I > 2σ(I) |
Tmin = 0.835, Tmax = 0.933 | Rint = 0.067 |
10242 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 0.95 | Δρmax = 0.42 e Å−3 |
3919 reflections | Δρmin = −0.40 e Å−3 |
246 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.13690 (4) | 0.30575 (4) | 0.48412 (3) | 0.03906 (15) | |
Cl1 | 0.62679 (9) | 0.43238 (11) | 0.13181 (9) | 0.0497 (3) | |
Cl2 | 0.18134 (7) | 0.73567 (10) | 0.24229 (7) | 0.0366 (3) | |
O1 | 0.4928 (2) | 1.0157 (2) | 0.21182 (19) | 0.0336 (7) | |
O2 | 0.6208 (2) | 1.1174 (3) | 0.3359 (2) | 0.0391 (7) | |
N1 | 0.4274 (2) | 0.7807 (3) | 0.3884 (2) | 0.0220 (7) | |
H1 | 0.3580 | 0.7579 | 0.3678 | 0.026* | |
N2 | 0.5907 (2) | 0.8308 (3) | 0.5160 (2) | 0.0244 (7) | |
H2 | 0.6422 | 0.8109 | 0.5736 | 0.029* | |
N3 | 0.4682 (2) | 0.7087 (3) | 0.5462 (2) | 0.0236 (7) | |
H3 | 0.5075 | 0.7251 | 0.6085 | 0.028* | |
C1 | 0.4941 (4) | 1.1104 (4) | 0.1460 (3) | 0.0420 (11) | |
H1A | 0.5703 | 1.1363 | 0.1632 | 0.063* | |
H1B | 0.4503 | 1.1788 | 0.1515 | 0.063* | |
H1C | 0.4624 | 1.0801 | 0.0785 | 0.063* | |
C2 | 0.5598 (3) | 1.0312 (3) | 0.3065 (3) | 0.0266 (9) | |
C3 | 0.5487 (3) | 0.9312 (3) | 0.3668 (3) | 0.0213 (8) | |
C4 | 0.6119 (3) | 0.9232 (3) | 0.4638 (3) | 0.0239 (9) | |
C5 | 0.7060 (3) | 1.0023 (3) | 0.5265 (3) | 0.0320 (10) | |
H5A | 0.6981 | 1.0819 | 0.4961 | 0.048* | |
H5B | 0.7760 | 0.9660 | 0.5329 | 0.048* | |
H5C | 0.7056 | 1.0105 | 0.5916 | 0.048* | |
C6 | 0.4680 (3) | 0.8309 (3) | 0.3176 (3) | 0.0217 (8) | |
H6 | 0.4033 | 0.8674 | 0.2625 | 0.026* | |
C7 | 0.5126 (3) | 0.7297 (3) | 0.2746 (2) | 0.0232 (8) | |
C8 | 0.6080 (3) | 0.7427 (4) | 0.2584 (3) | 0.0282 (9) | |
H8 | 0.6504 | 0.8145 | 0.2791 | 0.034* | |
C9 | 0.6427 (3) | 0.6536 (4) | 0.2129 (3) | 0.0308 (9) | |
H9 | 0.7070 | 0.6643 | 0.2008 | 0.037* | |
C10 | 0.5819 (3) | 0.5490 (4) | 0.1855 (3) | 0.0308 (10) | |
C11 | 0.4875 (3) | 0.5316 (4) | 0.2014 (3) | 0.0305 (10) | |
H11 | 0.4475 | 0.4581 | 0.1833 | 0.037* | |
C12 | 0.4528 (3) | 0.6233 (4) | 0.2441 (3) | 0.0268 (9) | |
H12 | 0.3863 | 0.6137 | 0.2529 | 0.032* | |
C13 | 0.4936 (3) | 0.7697 (3) | 0.4817 (3) | 0.0202 (8) | |
C14 | 0.3842 (3) | 0.6193 (3) | 0.5253 (3) | 0.0230 (8) | |
C15 | 0.3303 (3) | 0.6112 (4) | 0.5866 (3) | 0.0284 (9) | |
H15 | 0.3441 | 0.6692 | 0.6370 | 0.034* | |
C16 | 0.2553 (3) | 0.5180 (4) | 0.5747 (3) | 0.0301 (9) | |
H16 | 0.2184 | 0.5112 | 0.6170 | 0.036* | |
C17 | 0.2358 (3) | 0.4357 (3) | 0.5001 (3) | 0.0277 (9) | |
C18 | 0.2874 (3) | 0.4450 (3) | 0.4374 (3) | 0.0246 (9) | |
H18 | 0.2711 | 0.3889 | 0.3853 | 0.029* | |
C19 | 0.3625 (3) | 0.5356 (3) | 0.4501 (3) | 0.0237 (8) | |
H19 | 0.3996 | 0.5412 | 0.4078 | 0.028* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0491 (3) | 0.0302 (2) | 0.0386 (3) | −0.0145 (2) | 0.0188 (2) | −0.0051 (2) |
Cl1 | 0.0502 (7) | 0.0405 (7) | 0.0635 (8) | 0.0083 (5) | 0.0285 (6) | −0.0154 (6) |
Cl2 | 0.0226 (5) | 0.0571 (7) | 0.0259 (5) | −0.0006 (5) | 0.0058 (4) | 0.0065 (5) |
O1 | 0.0401 (16) | 0.0293 (17) | 0.0292 (16) | −0.0082 (13) | 0.0117 (13) | 0.0027 (12) |
O2 | 0.0433 (17) | 0.0265 (16) | 0.0440 (18) | −0.0114 (14) | 0.0144 (14) | −0.0019 (14) |
N1 | 0.0136 (14) | 0.0266 (19) | 0.0221 (17) | −0.0004 (12) | 0.0036 (13) | 0.0000 (13) |
N2 | 0.0169 (16) | 0.0249 (19) | 0.0239 (17) | −0.0012 (13) | 0.0007 (13) | 0.0002 (13) |
N3 | 0.0243 (16) | 0.0268 (19) | 0.0173 (16) | −0.0040 (14) | 0.0060 (13) | −0.0026 (14) |
C1 | 0.052 (3) | 0.040 (3) | 0.038 (3) | −0.009 (2) | 0.022 (2) | 0.007 (2) |
C2 | 0.027 (2) | 0.023 (2) | 0.034 (2) | −0.0016 (17) | 0.0166 (19) | −0.0060 (18) |
C3 | 0.0227 (19) | 0.017 (2) | 0.026 (2) | −0.0006 (15) | 0.0112 (17) | −0.0029 (16) |
C4 | 0.022 (2) | 0.017 (2) | 0.032 (2) | −0.0007 (15) | 0.0109 (18) | −0.0044 (16) |
C5 | 0.026 (2) | 0.024 (2) | 0.038 (2) | −0.0018 (17) | 0.0033 (18) | −0.0081 (19) |
C6 | 0.0198 (18) | 0.023 (2) | 0.0206 (19) | −0.0013 (15) | 0.0063 (16) | 0.0009 (15) |
C7 | 0.026 (2) | 0.023 (2) | 0.0172 (19) | 0.0028 (16) | 0.0063 (16) | 0.0027 (15) |
C8 | 0.024 (2) | 0.028 (2) | 0.031 (2) | −0.0029 (17) | 0.0097 (17) | −0.0013 (18) |
C9 | 0.028 (2) | 0.032 (2) | 0.038 (2) | 0.0020 (18) | 0.0194 (19) | −0.0010 (19) |
C10 | 0.033 (2) | 0.025 (2) | 0.032 (2) | 0.0083 (18) | 0.0110 (19) | −0.0031 (18) |
C11 | 0.028 (2) | 0.026 (2) | 0.031 (2) | −0.0031 (17) | 0.0042 (18) | −0.0004 (18) |
C12 | 0.024 (2) | 0.030 (2) | 0.025 (2) | 0.0034 (17) | 0.0092 (17) | 0.0019 (18) |
C13 | 0.0185 (18) | 0.019 (2) | 0.025 (2) | 0.0029 (15) | 0.0107 (17) | −0.0035 (16) |
C14 | 0.025 (2) | 0.019 (2) | 0.021 (2) | 0.0047 (15) | 0.0052 (17) | 0.0040 (16) |
C15 | 0.038 (2) | 0.024 (2) | 0.024 (2) | −0.0020 (18) | 0.0140 (19) | −0.0055 (17) |
C16 | 0.037 (2) | 0.030 (2) | 0.029 (2) | −0.0050 (18) | 0.0176 (19) | −0.0007 (18) |
C17 | 0.034 (2) | 0.018 (2) | 0.027 (2) | −0.0033 (16) | 0.0074 (18) | −0.0001 (17) |
C18 | 0.030 (2) | 0.022 (2) | 0.021 (2) | −0.0001 (16) | 0.0093 (17) | −0.0026 (16) |
C19 | 0.025 (2) | 0.022 (2) | 0.024 (2) | 0.0063 (16) | 0.0098 (17) | 0.0028 (17) |
Br1—C17 | 1.898 (4) | C5—H5C | 0.9800 |
Cl1—C10 | 1.751 (4) | C6—C7 | 1.529 (5) |
O1—C2 | 1.339 (4) | C6—H6 | 1.0000 |
O1—C1 | 1.445 (5) | C7—C8 | 1.390 (5) |
O2—C2 | 1.214 (4) | C7—C12 | 1.391 (5) |
N1—C13 | 1.315 (4) | C8—C9 | 1.382 (5) |
N1—C6 | 1.479 (4) | C8—H8 | 0.9500 |
N1—H1 | 0.8800 | C9—C10 | 1.377 (5) |
N2—C13 | 1.357 (4) | C9—H9 | 0.9500 |
N2—C4 | 1.386 (5) | C10—C11 | 1.381 (5) |
N2—H2 | 0.8800 | C11—C12 | 1.377 (5) |
N3—C13 | 1.330 (4) | C11—H11 | 0.9500 |
N3—C14 | 1.428 (4) | C12—H12 | 0.9500 |
N3—H3 | 0.8800 | C14—C15 | 1.377 (5) |
C1—H1A | 0.9800 | C14—C19 | 1.395 (5) |
C1—H1B | 0.9800 | C15—C16 | 1.395 (5) |
C1—H1C | 0.9800 | C15—H15 | 0.9500 |
C2—C3 | 1.475 (5) | C16—C17 | 1.381 (5) |
C3—C4 | 1.349 (5) | C16—H16 | 0.9500 |
C3—C6 | 1.510 (5) | C17—C18 | 1.373 (5) |
C4—C5 | 1.500 (5) | C18—C19 | 1.374 (5) |
C5—H5A | 0.9800 | C18—H18 | 0.9500 |
C5—H5B | 0.9800 | C19—H19 | 0.9500 |
C2—O1—C1 | 116.1 (3) | C8—C7—C6 | 122.3 (3) |
C13—N1—C6 | 120.9 (3) | C12—C7—C6 | 119.6 (3) |
C13—N1—H1 | 119.6 | C9—C8—C7 | 121.5 (4) |
C6—N1—H1 | 119.6 | C9—C8—H8 | 119.3 |
C13—N2—C4 | 122.4 (3) | C7—C8—H8 | 119.3 |
C13—N2—H2 | 118.8 | C10—C9—C8 | 118.5 (4) |
C4—N2—H2 | 118.8 | C10—C9—H9 | 120.7 |
C13—N3—C14 | 127.0 (3) | C8—C9—H9 | 120.7 |
C13—N3—H3 | 116.5 | C9—C10—C11 | 121.9 (4) |
C14—N3—H3 | 116.5 | C9—C10—Cl1 | 119.5 (3) |
O1—C1—H1A | 109.5 | C11—C10—Cl1 | 118.6 (3) |
O1—C1—H1B | 109.5 | C12—C11—C10 | 118.4 (4) |
H1A—C1—H1B | 109.5 | C12—C11—H11 | 120.8 |
O1—C1—H1C | 109.5 | C10—C11—H11 | 120.8 |
H1A—C1—H1C | 109.5 | C11—C12—C7 | 121.6 (4) |
H1B—C1—H1C | 109.5 | C11—C12—H12 | 119.2 |
O2—C2—O1 | 122.6 (4) | C7—C12—H12 | 119.2 |
O2—C2—C3 | 126.2 (4) | N1—C13—N3 | 124.0 (3) |
O1—C2—C3 | 111.1 (3) | N1—C13—N2 | 118.3 (3) |
C4—C3—C2 | 122.2 (3) | N3—C13—N2 | 117.6 (3) |
C4—C3—C6 | 118.7 (3) | C15—C14—C19 | 120.1 (3) |
C2—C3—C6 | 119.0 (3) | C15—C14—N3 | 118.2 (3) |
C3—C4—N2 | 118.3 (3) | C19—C14—N3 | 121.6 (3) |
C3—C4—C5 | 128.8 (4) | C14—C15—C16 | 120.1 (4) |
N2—C4—C5 | 112.9 (3) | C14—C15—H15 | 120.0 |
C4—C5—H5A | 109.5 | C16—C15—H15 | 120.0 |
C4—C5—H5B | 109.5 | C17—C16—C15 | 118.8 (4) |
H5A—C5—H5B | 109.5 | C17—C16—H16 | 120.6 |
C4—C5—H5C | 109.5 | C15—C16—H16 | 120.6 |
H5A—C5—H5C | 109.5 | C18—C17—C16 | 121.4 (4) |
H5B—C5—H5C | 109.5 | C18—C17—Br1 | 118.9 (3) |
N1—C6—C3 | 108.8 (3) | C16—C17—Br1 | 119.7 (3) |
N1—C6—C7 | 110.0 (3) | C17—C18—C19 | 119.8 (3) |
C3—C6—C7 | 115.3 (3) | C17—C18—H18 | 120.1 |
N1—C6—H6 | 107.5 | C19—C18—H18 | 120.1 |
C3—C6—H6 | 107.5 | C18—C19—C14 | 119.9 (3) |
C7—C6—H6 | 107.5 | C18—C19—H19 | 120.1 |
C8—C7—C12 | 118.0 (4) | C14—C19—H19 | 120.1 |
C1—O1—C2—O2 | −2.1 (5) | C8—C9—C10—C11 | 0.6 (6) |
C1—O1—C2—C3 | 178.1 (3) | C8—C9—C10—Cl1 | −177.6 (3) |
O2—C2—C3—C4 | −3.4 (6) | C9—C10—C11—C12 | 1.4 (6) |
O1—C2—C3—C4 | 176.4 (3) | Cl1—C10—C11—C12 | 179.7 (3) |
O2—C2—C3—C6 | 179.9 (4) | C10—C11—C12—C7 | −2.6 (6) |
O1—C2—C3—C6 | −0.3 (5) | C8—C7—C12—C11 | 1.6 (5) |
C2—C3—C4—N2 | 175.7 (3) | C6—C7—C12—C11 | 177.4 (3) |
C6—C3—C4—N2 | −7.6 (5) | C6—N1—C13—N3 | −168.9 (3) |
C2—C3—C4—C5 | −4.6 (6) | C6—N1—C13—N2 | 15.6 (5) |
C6—C3—C4—C5 | 172.2 (3) | C14—N3—C13—N1 | 18.7 (6) |
C13—N2—C4—C3 | −18.5 (5) | C14—N3—C13—N2 | −165.8 (3) |
C13—N2—C4—C5 | 161.7 (3) | C4—N2—C13—N1 | 14.7 (5) |
C13—N1—C6—C3 | −37.3 (4) | C4—N2—C13—N3 | −161.0 (3) |
C13—N1—C6—C7 | 89.8 (4) | C13—N3—C14—C15 | −146.4 (4) |
C4—C3—C6—N1 | 32.5 (4) | C13—N3—C14—C19 | 38.7 (5) |
C2—C3—C6—N1 | −150.7 (3) | C19—C14—C15—C16 | 1.2 (5) |
C4—C3—C6—C7 | −91.6 (4) | N3—C14—C15—C16 | −173.8 (3) |
C2—C3—C6—C7 | 85.3 (4) | C14—C15—C16—C17 | −0.7 (6) |
N1—C6—C7—C8 | −139.6 (3) | C15—C16—C17—C18 | −0.9 (6) |
C3—C6—C7—C8 | −16.2 (5) | C15—C16—C17—Br1 | 178.5 (3) |
N1—C6—C7—C12 | 44.8 (4) | C16—C17—C18—C19 | 1.9 (6) |
C3—C6—C7—C12 | 168.2 (3) | Br1—C17—C18—C19 | −177.4 (3) |
C12—C7—C8—C9 | 0.5 (5) | C17—C18—C19—C14 | −1.4 (5) |
C6—C7—C8—C9 | −175.2 (3) | C15—C14—C19—C18 | −0.1 (5) |
C7—C8—C9—C10 | −1.5 (6) | N3—C14—C19—C18 | 174.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl2 | 0.88 | 2.34 | 3.136 (3) | 151 |
N2—H2···Cl2i | 0.88 | 2.41 | 3.179 (3) | 146 |
N3—H3···Cl2i | 0.88 | 2.39 | 3.191 (3) | 151 |
C5—H5A···O2 | 0.98 | 2.22 | 2.897 (5) | 125 |
C15—H15···O2ii | 0.95 | 2.42 | 3.197 (5) | 139 |
C18—H18···Cl2iii | 0.95 | 2.81 | 3.702 (4) | 156 |
Symmetry codes: (i) x+1/2, −y+3/2, z+1/2; (ii) −x+1, −y+2, −z+1; (iii) −x+1/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C19H18BrClN3O2+·Cl− |
Mr | 471.17 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 100 |
a, b, c (Å) | 13.2691 (15), 11.0965 (12), 14.9545 (17) |
β (°) | 114.181 (3) |
V (Å3) | 2008.7 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 2.33 |
Crystal size (mm) | 0.08 × 0.05 × 0.03 |
Data collection | |
Diffractometer | Bruker Kappa DUO APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.835, 0.933 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10242, 3919, 2511 |
Rint | 0.067 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.096, 0.95 |
No. of reflections | 3919 |
No. of parameters | 246 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.42, −0.40 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008), PLATON (Spek, 2009) and PARST (Nardelli, 1995).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Cl2 | 0.8800 | 2.3400 | 3.136 (3) | 151.00 |
N2—H2···Cl2i | 0.8800 | 2.4100 | 3.179 (3) | 146.00 |
N3—H3···Cl2i | 0.8800 | 2.3900 | 3.191 (3) | 151.00 |
C5—H5A···O2 | 0.9800 | 2.2200 | 2.897 (5) | 125.00 |
C15—H15···O2ii | 0.9500 | 2.4200 | 3.197 (5) | 139.00 |
C18—H18···Cl2iii | 0.9500 | 2.8100 | 3.702 (4) | 156.00 |
Symmetry codes: (i) x+1/2, −y+3/2, z+1/2; (ii) −x+1, −y+2, −z+1; (iii) −x+1/2, y−1/2, −z+1/2. |
Acknowledgements
The authors thank Durban University of Technology for facilities. KNV thanks the NRF South Africa for a DST/NRF Innovation Postdoctoral Fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We have recently reported that the chloride salts of dihydropyrimidine derivatives exhibit anti-tubercular activity (Venugopala, Nayak, Pillay et al. 2012). In continuation of our work in this field and on the crystal structures of dihydropyrimidine derivatives (Venugopala, Nayak & Odhav, 2012), we now report in this article, the crystal structure of the title compound.
The bond distances and angles in the title compound (Fig. 1) agree very well with the corresponding bond distances and angles reported in a closely related compound (Venugopala, Nayak &Odhav, 2012).The dihedral angles between the planes of 4-chlorophenyl and 4-bromophenyl rings with the plane of the six-membered pyrimidine ring are 72.4 (2)° and 45.5 (2)°, respectively. The conformation of the title molecule is stabilized by intramolecular C5—H5···O2 interactions. The crystal structure is stabilized by the N—H···Cl hydrogen bonds and further consolidated by weak C—H···O and C—H···Cl hydrogen bonding interactions (Table 1 & Fig. 2).
In the crystal structure, Cl2 is hydrogen bonded to N2 and N3 forming six membered rings in R21(6) motif (Bernstein et al.,1995). This Cl2 is also involved in a hydrogen bond (C18—H18···Cl2) with a molecule lying about an inversion center thus resulting in dimers. In addition, N1—H1···Cl2 interactions link the dimers into chains in the (1 0 1) direction. C15—H15···O2 interactions also result in macrocyclic rings about inversion centers resulting in dimers. Finally, a Br1···Cl1* short contact (3.482 (2) Å, symmetry code *: x - 1/2, -y + 1/2, z + 1/2) interlinks the hydrogen bonded chains along the b axis.