metal-organic compounds
Bis{1-[(1H-benzimidazol-1-yl)methyl]-1H-imidazole-κN3}bis(3,5-dicarboxybenzoato-κ2O1,O1′)nickel(II) octahydrate
aPharmacy College, Henan University of Traditional Chinese Medicine, Zhengzhou 450008, People's Republic of China
*Correspondence e-mail: hnzyjyy@126.com
In the title complex, [Ni(C9H5O6)2(C11H10N4)2]·8H2O, the NiII ion exhibits 2. It has a distorted octahedral coordination defined by two N atoms from two symmetry-related 1-[(1H-benzimidazol-1-yl)methyl]-1H-imidazole ligands and four O atoms from two symmetry-related 3,5-dicarboxybenzoate anions. In the crystal, the complex molecules and solvent water molecules are linked via O—H⋯O, O—H⋯N and N—H⋯O hydrogen bonds, forming a three-dimensional structure. There are also a number of C—H⋯O interactions present.
Related literature
For background information to NiII complexes constructed from both aromatic carboxylates and N-heterocyclic ligands, see: Hu et al. (2011); Xu et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2004); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536813003322/su2557sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813003322/su2557Isup2.hkl
A mixture of Ni(NO3)2 (0.1 mmol), 1-((1H-benzimidazol-1-yl)methyl)-1H-imidazole (0.1 mmol), 1,3,5-benzenetricarboxylic acid (0.1 mmol) and water (10 ml) was placed in a 25 ml Teflon-lined stainless steel vessel and heated at 373 K for 72 h, then cooled to room temperature. Green crystals were obtained from the filtrate and dried in air.
The C-bound H atoms were positioned geometrically and refined as riding atom: C-H = 0.93 (aromatic) Å and 0.97 (CH2) Å. The water and NH H atoms were located in difference Fourier maps. In the final cycles of
they were included in calculated positions and refined as riding atoms: N-H = 0.86 Å and O-H = 0.82 (OH) Å and O-H = 0.85 (H2O) Å. All H atoms were refined with Uiso(H) = 1.2Ueq(C,N,O).Data collection: CrystalClear (Rigaku/MSC, 2004); cell
CrystalClear (Rigaku/MSC, 2004); data reduction: CrystalClear (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. View of the molecular structure of the title complex, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. H atoms have been omitted for clarity [symmetry code: A = -x + 1, y, -z + 1/2.]. |
[Ni(C9H5O6)2(C11H10N4)2]·8H2O | F(000) = 2120 |
Mr = 1017.56 | Dx = 1.493 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
a = 20.623 (4) Å | Cell parameters from 5823 reflections |
b = 14.626 (3) Å | θ = 1.7–27.9° |
c = 15.471 (3) Å | µ = 0.52 mm−1 |
β = 104.03 (3)° | T = 293 K |
V = 4527.2 (16) Å3 | Prism, green |
Z = 4 | 0.19 × 0.17 × 0.12 mm |
Rigaku Saturn diffractometer | 4215 independent reflections |
Radiation source: fine-focus sealed tube | 3719 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.045 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 25.5°, θmin = 2.0° |
ω scans | h = −24→24 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2004) | k = −14→17 |
Tmin = 0.908, Tmax = 0.940 | l = −18→15 |
16185 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.064 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.172 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0894P)2 + 4.146P] where P = (Fo2 + 2Fc2)/3 |
4215 reflections | (Δ/σ)max < 0.001 |
314 parameters | Δρmax = 0.67 e Å−3 |
0 restraints | Δρmin = −0.47 e Å−3 |
[Ni(C9H5O6)2(C11H10N4)2]·8H2O | V = 4527.2 (16) Å3 |
Mr = 1017.56 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 20.623 (4) Å | µ = 0.52 mm−1 |
b = 14.626 (3) Å | T = 293 K |
c = 15.471 (3) Å | 0.19 × 0.17 × 0.12 mm |
β = 104.03 (3)° |
Rigaku Saturn diffractometer | 4215 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2004) | 3719 reflections with I > 2σ(I) |
Tmin = 0.908, Tmax = 0.940 | Rint = 0.045 |
16185 measured reflections |
R[F2 > 2σ(F2)] = 0.064 | 0 restraints |
wR(F2) = 0.172 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.67 e Å−3 |
4215 reflections | Δρmin = −0.47 e Å−3 |
314 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.50000 | 0.05398 (4) | 0.25000 | 0.0263 (2) | |
O1 | 0.44973 (11) | 0.17115 (16) | 0.15907 (16) | 0.0365 (8) | |
O2 | 0.40111 (11) | 0.07735 (16) | 0.23391 (16) | 0.0338 (8) | |
O3 | 0.15958 (15) | 0.0697 (2) | 0.1857 (2) | 0.0608 (13) | |
O4 | 0.09844 (14) | 0.1905 (2) | 0.1294 (3) | 0.0686 (13) | |
O5 | 0.20784 (14) | 0.46292 (18) | 0.0447 (2) | 0.0522 (10) | |
O6 | 0.31803 (15) | 0.46684 (19) | 0.0667 (2) | 0.0568 (10) | |
N1 | 0.51386 (13) | −0.03683 (19) | 0.35162 (18) | 0.0300 (9) | |
N2 | 0.54931 (13) | −0.09621 (19) | 0.48450 (18) | 0.0293 (8) | |
N3 | 0.65040 (14) | −0.2528 (2) | 0.61442 (19) | 0.0340 (9) | |
N4 | 0.70616 (14) | −0.13469 (19) | 0.58371 (19) | 0.0327 (9) | |
C1 | 0.55815 (16) | −0.0300 (2) | 0.4289 (2) | 0.0277 (10) | |
C2 | 0.47484 (17) | −0.1117 (2) | 0.3587 (2) | 0.0377 (11) | |
C3 | 0.49601 (18) | −0.1488 (3) | 0.4409 (2) | 0.0390 (12) | |
C4 | 0.58605 (17) | −0.1066 (2) | 0.5776 (2) | 0.0335 (11) | |
C5 | 0.64692 (16) | −0.1648 (2) | 0.5901 (2) | 0.0292 (10) | |
C6 | 0.75139 (17) | −0.2070 (2) | 0.6066 (2) | 0.0326 (10) | |
C7 | 0.81932 (18) | −0.2116 (3) | 0.6135 (2) | 0.0413 (11) | |
C8 | 0.8498 (2) | −0.2936 (3) | 0.6411 (3) | 0.0488 (14) | |
C9 | 0.8142 (2) | −0.3693 (3) | 0.6597 (3) | 0.0491 (14) | |
C10 | 0.7470 (2) | −0.3652 (3) | 0.6525 (3) | 0.0473 (14) | |
C11 | 0.71606 (17) | −0.2822 (2) | 0.6260 (2) | 0.0329 (11) | |
C12 | 0.39819 (16) | 0.1458 (2) | 0.1831 (2) | 0.0305 (10) | |
C13 | 0.33326 (16) | 0.1947 (2) | 0.1540 (2) | 0.0298 (10) | |
C14 | 0.27601 (17) | 0.1527 (2) | 0.1660 (2) | 0.0338 (11) | |
C15 | 0.21442 (16) | 0.1966 (2) | 0.1419 (2) | 0.0330 (11) | |
C16 | 0.21099 (17) | 0.2849 (2) | 0.1080 (2) | 0.0352 (11) | |
C17 | 0.26850 (17) | 0.3292 (2) | 0.0971 (2) | 0.0331 (11) | |
C18 | 0.32924 (17) | 0.2827 (2) | 0.1189 (2) | 0.0325 (10) | |
C19 | 0.15416 (19) | 0.1473 (3) | 0.1539 (3) | 0.0441 (14) | |
C20 | 0.26497 (19) | 0.4268 (2) | 0.0666 (3) | 0.0403 (11) | |
O7 | −0.07964 (17) | −0.0247 (2) | 0.2232 (2) | 0.0719 (11) | |
O8 | −0.03597 (17) | −0.1763 (2) | 0.3458 (3) | 0.0795 (14) | |
O9 | 0.5992 (2) | 0.5579 (3) | 0.5235 (3) | 0.107 (2) | |
O10 | −0.0070 (3) | 0.0946 (5) | 0.1264 (4) | 0.183 (3) | |
H1A | 0.59100 | 0.01480 | 0.44280 | 0.0330* | |
H2A | 0.43950 | −0.13330 | 0.31400 | 0.0450* | |
H3 | 0.12890 | 0.06020 | 0.20980 | 0.0730* | |
H3A | 0.47820 | −0.19940 | 0.46330 | 0.0470* | |
H3B | 0.61750 | −0.28560 | 0.62170 | 0.0410* | |
H4A | 0.55640 | −0.13310 | 0.61090 | 0.0400* | |
H4B | 0.59910 | −0.04650 | 0.60230 | 0.0400* | |
H5 | 0.21090 | 0.51760 | 0.05690 | 0.0630* | |
H7A | 0.84320 | −0.16180 | 0.60010 | 0.0500* | |
H8A | 0.89570 | −0.29890 | 0.64760 | 0.0580* | |
H9A | 0.83670 | −0.42380 | 0.67730 | 0.0590* | |
H10A | 0.72310 | −0.41550 | 0.66490 | 0.0570* | |
H14A | 0.27870 | 0.09430 | 0.19040 | 0.0410* | |
H16A | 0.17000 | 0.31480 | 0.09230 | 0.0420* | |
H18A | 0.36750 | 0.31080 | 0.11000 | 0.0390* | |
H1W | −0.06060 | 0.01530 | 0.19800 | 0.0860* | |
H2W | −0.11320 | −0.02630 | 0.17870 | 0.0860* | |
H3W | −0.00440 | −0.21200 | 0.34160 | 0.0950* | |
H4W | −0.04180 | −0.14410 | 0.29870 | 0.0950* | |
H5W | 0.61540 | 0.52330 | 0.56760 | 0.1280* | |
H6W | 0.63240 | 0.55220 | 0.50050 | 0.1280* | |
H7W | 0.02720 | 0.12840 | 0.13100 | 0.2200* | |
H8W | −0.03660 | 0.09890 | 0.07760 | 0.2200* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.0205 (3) | 0.0263 (4) | 0.0307 (4) | 0.0000 | 0.0033 (2) | 0.0000 |
O1 | 0.0243 (12) | 0.0331 (14) | 0.0513 (15) | 0.0031 (10) | 0.0077 (11) | 0.0034 (11) |
O2 | 0.0270 (12) | 0.0347 (14) | 0.0377 (13) | 0.0067 (10) | 0.0042 (10) | 0.0067 (11) |
O3 | 0.0446 (18) | 0.0437 (18) | 0.102 (3) | 0.0041 (13) | 0.0330 (17) | 0.0223 (16) |
O4 | 0.0281 (15) | 0.0512 (19) | 0.124 (3) | 0.0069 (13) | 0.0135 (16) | 0.0257 (18) |
O5 | 0.0395 (16) | 0.0236 (13) | 0.087 (2) | 0.0071 (11) | 0.0026 (14) | 0.0013 (14) |
O6 | 0.0411 (17) | 0.0366 (16) | 0.091 (2) | −0.0024 (13) | 0.0129 (15) | 0.0155 (15) |
N1 | 0.0242 (14) | 0.0300 (15) | 0.0347 (16) | 0.0026 (11) | 0.0048 (12) | 0.0012 (12) |
N2 | 0.0243 (14) | 0.0289 (15) | 0.0332 (15) | 0.0024 (11) | 0.0039 (11) | 0.0034 (12) |
N3 | 0.0287 (15) | 0.0293 (16) | 0.0445 (17) | −0.0005 (12) | 0.0101 (13) | 0.0083 (13) |
N4 | 0.0280 (15) | 0.0285 (15) | 0.0395 (16) | 0.0000 (12) | 0.0044 (12) | 0.0006 (12) |
C1 | 0.0224 (15) | 0.0256 (17) | 0.0349 (18) | 0.0017 (13) | 0.0067 (13) | 0.0007 (13) |
C2 | 0.0286 (18) | 0.037 (2) | 0.043 (2) | −0.0081 (15) | 0.0002 (15) | 0.0003 (16) |
C3 | 0.036 (2) | 0.032 (2) | 0.047 (2) | −0.0066 (15) | 0.0064 (16) | 0.0048 (16) |
C4 | 0.0305 (18) | 0.037 (2) | 0.0316 (18) | 0.0079 (15) | 0.0049 (14) | 0.0020 (15) |
C5 | 0.0297 (17) | 0.0279 (18) | 0.0280 (17) | 0.0025 (13) | 0.0029 (13) | 0.0005 (13) |
C6 | 0.0335 (18) | 0.0285 (18) | 0.0341 (18) | 0.0037 (14) | 0.0048 (14) | −0.0005 (14) |
C7 | 0.0310 (19) | 0.045 (2) | 0.047 (2) | 0.0018 (16) | 0.0079 (16) | −0.0029 (17) |
C8 | 0.034 (2) | 0.056 (3) | 0.055 (2) | 0.0137 (18) | 0.0083 (17) | −0.003 (2) |
C9 | 0.044 (2) | 0.040 (2) | 0.060 (3) | 0.0183 (18) | 0.0065 (19) | 0.0026 (19) |
C10 | 0.045 (2) | 0.035 (2) | 0.061 (3) | 0.0074 (17) | 0.0112 (19) | 0.0092 (19) |
C11 | 0.0298 (18) | 0.0283 (18) | 0.0387 (19) | 0.0059 (14) | 0.0044 (14) | 0.0016 (14) |
C12 | 0.0264 (17) | 0.0296 (18) | 0.0324 (18) | 0.0049 (14) | 0.0012 (13) | −0.0053 (14) |
C13 | 0.0272 (17) | 0.0275 (18) | 0.0325 (18) | 0.0050 (13) | 0.0030 (13) | −0.0008 (14) |
C14 | 0.0286 (17) | 0.0263 (18) | 0.045 (2) | 0.0036 (14) | 0.0061 (15) | 0.0034 (15) |
C15 | 0.0262 (17) | 0.0280 (18) | 0.044 (2) | 0.0009 (14) | 0.0067 (15) | 0.0008 (15) |
C16 | 0.0262 (17) | 0.0310 (19) | 0.047 (2) | 0.0073 (14) | 0.0062 (15) | 0.0017 (15) |
C17 | 0.0269 (17) | 0.0274 (18) | 0.042 (2) | 0.0052 (13) | 0.0023 (14) | −0.0004 (14) |
C18 | 0.0278 (17) | 0.0298 (18) | 0.0400 (19) | 0.0018 (13) | 0.0082 (14) | −0.0026 (15) |
C19 | 0.034 (2) | 0.036 (2) | 0.061 (3) | 0.0022 (16) | 0.0092 (17) | 0.0035 (18) |
C20 | 0.038 (2) | 0.0285 (19) | 0.053 (2) | 0.0036 (15) | 0.0081 (17) | 0.0001 (16) |
O7 | 0.0484 (19) | 0.075 (2) | 0.090 (2) | −0.0035 (17) | 0.0122 (17) | −0.0016 (19) |
O8 | 0.074 (2) | 0.059 (2) | 0.125 (3) | 0.0071 (18) | 0.062 (2) | 0.008 (2) |
O9 | 0.114 (4) | 0.104 (4) | 0.106 (3) | 0.019 (3) | 0.034 (3) | 0.002 (3) |
O10 | 0.087 (4) | 0.270 (8) | 0.165 (5) | −0.095 (5) | −0.024 (4) | 0.106 (5) |
Ni1—O1 | 2.299 (2) | N3—H3B | 0.8600 |
Ni1—O2 | 2.023 (2) | C2—C3 | 1.354 (4) |
Ni1—N1 | 2.025 (3) | C4—C5 | 1.490 (5) |
Ni1—O1i | 2.299 (2) | C6—C11 | 1.392 (4) |
Ni1—O2i | 2.023 (2) | C6—C7 | 1.381 (5) |
Ni1—N1i | 2.025 (3) | C7—C8 | 1.373 (6) |
O1—C12 | 1.264 (4) | C8—C9 | 1.397 (6) |
O2—C12 | 1.265 (4) | C9—C10 | 1.365 (6) |
O3—C19 | 1.231 (5) | C10—C11 | 1.386 (5) |
O4—C19 | 1.285 (5) | C12—C13 | 1.488 (5) |
O5—C20 | 1.260 (5) | C13—C18 | 1.392 (4) |
O6—C20 | 1.241 (5) | C13—C14 | 1.383 (5) |
O3—H3 | 0.8200 | C14—C15 | 1.391 (5) |
O5—H5 | 0.8200 | C15—C16 | 1.389 (4) |
O7—H1W | 0.8500 | C15—C19 | 1.487 (5) |
O7—H2W | 0.8500 | C16—C17 | 1.397 (5) |
O8—H3W | 0.8500 | C17—C18 | 1.393 (5) |
O8—H4W | 0.8500 | C17—C20 | 1.500 (4) |
O9—H5W | 0.8500 | C1—H1A | 0.9300 |
O9—H6W | 0.8500 | C2—H2A | 0.9300 |
O10—H8W | 0.8500 | C3—H3A | 0.9300 |
O10—H7W | 0.8500 | C4—H4A | 0.9700 |
N1—C1 | 1.321 (4) | C4—H4B | 0.9700 |
N1—C2 | 1.379 (4) | C7—H7A | 0.9300 |
N2—C4 | 1.464 (4) | C8—H8A | 0.9300 |
N2—C3 | 1.377 (5) | C9—H9A | 0.9300 |
N2—C1 | 1.337 (4) | C10—H10A | 0.9300 |
N3—C5 | 1.338 (4) | C14—H14A | 0.9300 |
N3—C11 | 1.390 (5) | C16—H16A | 0.9300 |
N4—C6 | 1.398 (4) | C18—H18A | 0.9300 |
N4—C5 | 1.325 (4) | ||
O1—Ni1—O2 | 60.46 (9) | C6—C11—C10 | 121.9 (3) |
O1—Ni1—N1 | 157.24 (10) | N3—C11—C10 | 132.3 (3) |
O1—Ni1—O1i | 83.59 (9) | O1—C12—O2 | 119.9 (3) |
O1—Ni1—O2i | 103.95 (10) | O1—C12—C13 | 122.0 (3) |
O1—Ni1—N1i | 93.21 (10) | O2—C12—C13 | 118.2 (3) |
O2—Ni1—N1 | 98.90 (11) | C12—C13—C14 | 118.7 (3) |
O1i—Ni1—O2 | 103.95 (10) | C14—C13—C18 | 119.4 (3) |
O2—Ni1—O2i | 160.54 (10) | C12—C13—C18 | 121.8 (3) |
O2—Ni1—N1i | 93.84 (11) | C13—C14—C15 | 120.9 (3) |
O1i—Ni1—N1 | 93.21 (10) | C14—C15—C19 | 118.6 (3) |
O2i—Ni1—N1 | 93.84 (11) | C16—C15—C19 | 122.0 (3) |
N1—Ni1—N1i | 98.01 (12) | C14—C15—C16 | 119.3 (3) |
O1i—Ni1—O2i | 60.46 (9) | C15—C16—C17 | 120.6 (3) |
O1i—Ni1—N1i | 157.24 (10) | C16—C17—C20 | 120.1 (3) |
O2i—Ni1—N1i | 98.90 (11) | C16—C17—C18 | 119.0 (3) |
Ni1—O1—C12 | 83.57 (18) | C18—C17—C20 | 120.9 (3) |
Ni1—O2—C12 | 96.0 (2) | C13—C18—C17 | 120.7 (3) |
C19—O3—H3 | 109.00 | O3—C19—O4 | 124.0 (4) |
C20—O5—H5 | 109.00 | O3—C19—C15 | 120.0 (4) |
H1W—O7—H2W | 91.00 | O4—C19—C15 | 116.1 (4) |
H3W—O8—H4W | 103.00 | O6—C20—C17 | 118.3 (3) |
H5W—O9—H6W | 94.00 | O5—C20—O6 | 124.7 (3) |
H7W—O10—H8W | 116.00 | O5—C20—C17 | 117.0 (3) |
Ni1—N1—C2 | 127.4 (2) | N2—C1—H1A | 125.00 |
Ni1—N1—C1 | 126.1 (2) | N1—C1—H1A | 125.00 |
C1—N1—C2 | 106.1 (3) | N1—C2—H2A | 125.00 |
C1—N2—C4 | 126.1 (3) | C3—C2—H2A | 125.00 |
C1—N2—C3 | 107.9 (3) | N2—C3—H3A | 127.00 |
C3—N2—C4 | 125.8 (3) | C2—C3—H3A | 127.00 |
C5—N3—C11 | 108.5 (3) | N2—C4—H4B | 109.00 |
C5—N4—C6 | 107.5 (3) | C5—C4—H4A | 109.00 |
C11—N3—H3B | 126.00 | C5—C4—H4B | 109.00 |
C5—N3—H3B | 126.00 | N2—C4—H4A | 109.00 |
N1—C1—N2 | 110.8 (3) | H4A—C4—H4B | 108.00 |
N1—C2—C3 | 109.4 (3) | C8—C7—H7A | 122.00 |
N2—C3—C2 | 105.9 (3) | C6—C7—H7A | 122.00 |
N2—C4—C5 | 113.9 (3) | C9—C8—H8A | 119.00 |
N3—C5—N4 | 110.7 (3) | C7—C8—H8A | 119.00 |
N3—C5—C4 | 124.9 (3) | C10—C9—H9A | 119.00 |
N4—C5—C4 | 124.3 (3) | C8—C9—H9A | 119.00 |
N4—C6—C7 | 131.2 (3) | C9—C10—H10A | 122.00 |
C7—C6—C11 | 121.3 (3) | C11—C10—H10A | 122.00 |
N4—C6—C11 | 107.5 (3) | C13—C14—H14A | 120.00 |
C6—C7—C8 | 116.5 (4) | C15—C14—H14A | 120.00 |
C7—C8—C9 | 122.2 (4) | C17—C16—H16A | 120.00 |
C8—C9—C10 | 121.5 (4) | C15—C16—H16A | 120.00 |
C9—C10—C11 | 116.6 (4) | C13—C18—H18A | 120.00 |
N3—C11—C6 | 105.8 (3) | C17—C18—H18A | 120.00 |
O2—Ni1—O1—C12 | 1.55 (17) | C5—N4—C6—C11 | 0.7 (3) |
N1—Ni1—O1—C12 | −25.5 (3) | N1—C2—C3—N2 | −0.6 (4) |
O1i—Ni1—O1—C12 | −108.47 (18) | N2—C4—C5—N3 | −99.5 (4) |
O2i—Ni1—O1—C12 | −165.85 (18) | N2—C4—C5—N4 | 84.7 (4) |
N1i—Ni1—O1—C12 | 94.15 (19) | N4—C6—C7—C8 | 177.7 (4) |
O1—Ni1—O2—C12 | −1.55 (17) | C11—C6—C7—C8 | −0.6 (5) |
N1—Ni1—O2—C12 | 168.19 (19) | N4—C6—C11—N3 | −0.2 (3) |
O1i—Ni1—O2—C12 | 72.61 (19) | N4—C6—C11—C10 | −179.1 (3) |
N1i—Ni1—O2—C12 | −93.1 (2) | C7—C6—C11—N3 | 178.5 (3) |
O1—Ni1—N1—C1 | −101.9 (3) | C7—C6—C11—C10 | −0.4 (5) |
O1—Ni1—N1—C2 | 70.1 (4) | C6—C7—C8—C9 | 1.2 (6) |
O2—Ni1—N1—C1 | −125.5 (3) | C7—C8—C9—C10 | −0.9 (7) |
O2—Ni1—N1—C2 | 46.5 (3) | C8—C9—C10—C11 | −0.1 (6) |
O1i—Ni1—N1—C1 | −20.8 (3) | C9—C10—C11—N3 | −177.8 (4) |
O1i—Ni1—N1—C2 | 151.2 (3) | C9—C10—C11—C6 | 0.8 (6) |
O2i—Ni1—N1—C1 | 39.8 (3) | O1—C12—C13—C14 | 166.0 (3) |
O2i—Ni1—N1—C2 | −148.3 (3) | O1—C12—C13—C18 | −16.9 (5) |
N1i—Ni1—N1—C1 | 139.4 (3) | O2—C12—C13—C14 | −14.5 (4) |
N1i—Ni1—N1—C2 | −48.7 (3) | O2—C12—C13—C18 | 162.6 (3) |
Ni1—O1—C12—O2 | −2.5 (3) | C12—C13—C14—C15 | 178.4 (3) |
Ni1—O1—C12—C13 | 177.0 (3) | C18—C13—C14—C15 | 1.2 (5) |
Ni1—O2—C12—O1 | 2.8 (3) | C12—C13—C18—C17 | −176.1 (3) |
Ni1—O2—C12—C13 | −176.7 (2) | C14—C13—C18—C17 | 1.0 (5) |
Ni1—N1—C1—N2 | 173.3 (2) | C13—C14—C15—C16 | −2.1 (5) |
C2—N1—C1—N2 | −0.1 (4) | C13—C14—C15—C19 | 178.3 (3) |
Ni1—N1—C2—C3 | −172.8 (2) | C14—C15—C16—C17 | 0.7 (5) |
C1—N1—C2—C3 | 0.4 (4) | C19—C15—C16—C17 | −179.7 (3) |
C3—N2—C1—N1 | −0.3 (4) | C14—C15—C19—O3 | 0.9 (6) |
C4—N2—C1—N1 | −175.6 (3) | C14—C15—C19—O4 | −179.1 (4) |
C1—N2—C3—C2 | 0.5 (4) | C16—C15—C19—O3 | −178.7 (4) |
C4—N2—C3—C2 | 175.9 (3) | C16—C15—C19—O4 | 1.3 (6) |
C1—N2—C4—C5 | −91.3 (4) | C15—C16—C17—C18 | 1.4 (4) |
C3—N2—C4—C5 | 94.2 (4) | C15—C16—C17—C20 | −175.7 (3) |
C11—N3—C5—N4 | 0.9 (4) | C16—C17—C18—C13 | −2.3 (4) |
C11—N3—C5—C4 | −175.4 (3) | C20—C17—C18—C13 | 174.8 (3) |
C5—N3—C11—C6 | −0.4 (3) | C16—C17—C20—O5 | −5.8 (5) |
C5—N3—C11—C10 | 178.3 (4) | C16—C17—C20—O6 | 172.5 (3) |
C6—N4—C5—N3 | −1.0 (4) | C18—C17—C20—O5 | 177.2 (3) |
C6—N4—C5—C4 | 175.3 (3) | C18—C17—C20—O6 | −4.5 (5) |
C5—N4—C6—C7 | −177.7 (3) |
Symmetry code: (i) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H1W···O10 | 0.85 | 2.09 | 2.936 (7) | 170 |
O7—H2W···O6ii | 0.85 | 1.96 | 2.802 (4) | 172 |
O3—H3···O7iii | 0.82 | 2.04 | 2.782 (5) | 150 |
N3—H3B···O8iv | 0.86 | 1.95 | 2.780 (5) | 162 |
O8—H3W···O1v | 0.85 | 2.05 | 2.866 (4) | 161 |
O8—H4W···O7 | 0.85 | 2.14 | 2.915 (5) | 151 |
O5—H5···N4vi | 0.82 | 1.77 | 2.586 (4) | 172 |
O9—H5W···O3vii | 0.85 | 2.28 | 3.133 (5) | 180 |
O9—H6W···O6i | 0.85 | 2.05 | 2.791 (5) | 146 |
O10—H7W···O4 | 0.85 | 1.73 | 2.579 (7) | 173 |
C1—H1A···O5vii | 0.93 | 2.56 | 3.320 (4) | 139 |
C3—H3A···O4v | 0.93 | 2.46 | 3.078 (5) | 124 |
C4—H4A···O2viii | 0.97 | 2.49 | 2.895 (4) | 105 |
C4—H4A···O1ix | 0.97 | 2.55 | 3.479 (4) | 160 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) x−1/2, y−1/2, z; (iii) −x, y, −z+1/2; (iv) −x+1/2, −y−1/2, −z+1; (v) −x+1/2, y−1/2, −z+1/2; (vi) x−1/2, −y+1/2, z−1/2; (vii) x+1/2, −y+1/2, z+1/2; (viii) −x+1, −y, −z+1; (ix) x, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(C9H5O6)2(C11H10N4)2]·8H2O |
Mr | 1017.56 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 20.623 (4), 14.626 (3), 15.471 (3) |
β (°) | 104.03 (3) |
V (Å3) | 4527.2 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.52 |
Crystal size (mm) | 0.19 × 0.17 × 0.12 |
Data collection | |
Diffractometer | Rigaku Saturn diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2004) |
Tmin, Tmax | 0.908, 0.940 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16185, 4215, 3719 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.064, 0.172, 1.13 |
No. of reflections | 4215 |
No. of parameters | 314 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.67, −0.47 |
Computer programs: CrystalClear (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2010).
Ni1—O1 | 2.299 (2) | O1—C12 | 1.264 (4) |
Ni1—O2 | 2.023 (2) | O2—C12 | 1.265 (4) |
Ni1—N1 | 2.025 (3) | O3—C19 | 1.231 (5) |
Ni1—O1i | 2.299 (2) | O4—C19 | 1.285 (5) |
Ni1—O2i | 2.023 (2) | O5—C20 | 1.260 (5) |
Ni1—N1i | 2.025 (3) | O6—C20 | 1.241 (5) |
Symmetry code: (i) −x+1, y, −z+1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
O7—H1W···O10 | 0.85 | 2.09 | 2.936 (7) | 170 |
O7—H2W···O6ii | 0.85 | 1.96 | 2.802 (4) | 172 |
O3—H3···O7iii | 0.82 | 2.04 | 2.782 (5) | 150 |
N3—H3B···O8iv | 0.86 | 1.95 | 2.780 (5) | 162 |
O8—H3W···O1v | 0.85 | 2.05 | 2.866 (4) | 161 |
O8—H4W···O7 | 0.85 | 2.14 | 2.915 (5) | 151 |
O5—H5···N4vi | 0.82 | 1.77 | 2.586 (4) | 172 |
O9—H5W···O3vii | 0.85 | 2.28 | 3.133 (5) | 180 |
O9—H6W···O6i | 0.85 | 2.05 | 2.791 (5) | 146 |
O10—H7W···O4 | 0.85 | 1.73 | 2.579 (7) | 173 |
C1—H1A···O5vii | 0.93 | 2.56 | 3.320 (4) | 139 |
C3—H3A···O4v | 0.93 | 2.46 | 3.078 (5) | 124 |
C4—H4A···O1viii | 0.97 | 2.55 | 3.479 (4) | 160 |
Symmetry codes: (i) −x+1, y, −z+1/2; (ii) x−1/2, y−1/2, z; (iii) −x, y, −z+1/2; (iv) −x+1/2, −y−1/2, −z+1; (v) −x+1/2, y−1/2, −z+1/2; (vi) x−1/2, −y+1/2, z−1/2; (vii) x+1/2, −y+1/2, z+1/2; (viii) x, −y, z+1/2. |
Acknowledgements
This study was supported by the Science and Technology Department of Henan Province (082102330003).
References
Hu, J.-S., Huang, L.-F., Yao, X.-Q., Qin, L., Li, Y.-Z., Guo, Z.-J., Zheng, H.-G. & Xue, Z.-L. (2011). Inorg. Chem. 50, 2404–2414. Web of Science CSD CrossRef CAS PubMed Google Scholar
Rigaku/MSC (2004). CrystalClear. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Xu, J., Pan, Z.-R., Wang, T.-W., Li, Y.-Z., Guo, Z.-J., Batten, S. R. & Zheng, H.-G. (2010). CrystEngComm, 12, 612–619. Web of Science CSD CrossRef CAS Google Scholar
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Since NiII ions are able to coordinate simultaneously to both oxygen and nitrogen containing ligands the final products can exhibit attractive structures and useful functional properties. A great number of NiII complexes containing both aromatic carboxylates and N-heterocyclic ligands have been reported (Hu et al., 2011; Xu et al., 2010). In order to further explore such compounds with possibly new structures, we selected 1-((1H-benzimidazol-1-yl)methyl)-1H-imidazole and 1,3,5-benzenetricarboxylic acid as ligands to self-assemble with Ni(NO3)2 and obtained the title complex. The crystal structure of which is reported on herein.
As shown in Fig. 1, the NiII ion is located on a two-fold rotation axis. Each NiII ion features a distorted octahedral geometry and is hexacoordinated by four O atoms from two symmetry related 1,3,5-dicarboxybenzoate anions, in which carboxylate groups coordinate to the NiII ion in the chelating mode, and by two N atoms from two symmetry related 1-((1H-benzimidazol-1-yl)methyl)- 1H-imidazole ligands, which coordinate to NiII ion in a monodentate mode. Atoms O2, O2A, O1A, N1A, and Ni1 are nearly co-planar (the mean deviation from the plane is 0.0726 (12) Å), while atom O1 and N1 are located in the apical positions.
In the crystal, a series of O—H···O, O—H···N, and N—H···O hydrogen bonds linking, solvent water to water molecules, solvent water molecules and carboxylate O atoms, carboxyl groups and benzimidazole N atoms, and benzimidazole units and solvent water molecules, consolidate the crystal packing forming a three-dimensional structure (Table 1). There are also a number of C-H···O interactions present (Table 1).