organic compounds
(Z)-3-(2,4-Dichlorobenzyl)-1,5-benzothiazepin-4(5H)-one
aDepartment of Physics, Thanthai Periyar Government Institute of Technology, Vellore 632 002, India, bDepartment of Physics, Bharathidasan Engineering College, Nattrampalli, Vellore 635 854, India, and cDepartment of Organic Chemistry, University of Madras, Maraimalai Campus, Chennai 600 025, India
*Correspondence e-mail: smurugavel27@gmail.com
In the title compound, C16H11Cl2NOS, the seven-membered thiazepine ring adopts a distorted twist-boat conformation. The dihedral angle between the mean plane of the benzothiazepine ring system and the benzene ring is 78.6 (1)°. The molecular conformation is stabilized by a weak intramolecular C—H⋯Cl hydrogen bond, which generates an S(5) ring motif. In the crystal, pairs of N—H⋯O hydrogen bonds link inversion-related molecules into dimers, generating R22(8) ring motifs. The crystal packing also features alternating π–π interactions between benzothiazepine benzene rings [inter-centroid distance = 3.740 (3) Å] and dichlorobenzene rings [inter-centroid distance = 3.882 (3) Å] to consolidate a three-dimensional architecture.
Related literature
For background to the biology and related structures of thiazepin derivatives, see: Bakthadoss et al. (2013). For ring-puckering parameters, see: Cremer & Pople (1975). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2004); cell APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813007435/tk5208sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813007435/tk5208Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813007435/tk5208Isup3.cml
A mixture of (Z)-methyl 2-(bromomethyl)-3-(2,4-dichlorophenyl)acrylate 2 mmol) and o-aminothiophenol (2 mmol) in the presence of potassium tert-butoxide (4.8 mmol) in dry THF (10 ml) was stirred at room temperature for 1 h. After the completion of the reaction as indicated by TLC, the reaction mixture was concentrated and the resulting crude mass was diluted with water (20 ml) and extracted with ethyl acetate (3 x 20 ml). The organic layer was washed with brine (2 x 20 ml) and dried over anhydrous sodium sulfate. The organic layer was concentrated, which successfully provide the crude final product ((Z)-3-(2,4dichlorobenzyl)benzo[b][1,4]thiazepin-4(5H)-one). The final product was purified by
on silica gel to afford the title compound in good yield (42%). Single crystals suitable for X-ray diffraction were obtained by slow evaporation of its ethylacetate solution at room temperature.All the H atoms were positioned geometrically and constrained to ride on their parent atom with C—H = 0.93–0.97 Å and N—H = 0.86 Å, and with Uiso(H)=1.5Ueq for methyl H atoms and 1.2Ueq(C) for other H atoms.
Data collection: APEX2 (Bruker, 2004); cell
APEX2 and SAINT (Bruker, 2004); data reduction: SAINT and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C16H11Cl2NOS | Z = 2 |
Mr = 336.22 | F(000) = 344 |
Triclinic, P1 | Dx = 1.510 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.879 (5) Å | Cell parameters from 5914 reflections |
b = 9.667 (5) Å | θ = 2.1–33.7° |
c = 9.979 (5) Å | µ = 0.58 mm−1 |
α = 89.052 (5)° | T = 293 K |
β = 78.161 (4)° | Block, colourless |
γ = 83.647 (5)° | 0.24 × 0.21 × 0.15 mm |
V = 739.3 (7) Å3 |
Bruker APEXII CCD diffractometer | 5225 independent reflections |
Radiation source: fine-focus sealed tube | 4013 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
Detector resolution: 10.0 pixels mm-1 | θmax = 33.7°, θmin = 2.1° |
ω scans | h = −12→11 |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | k = −14→14 |
Tmin = 0.871, Tmax = 0.917 | l = −14→15 |
18415 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.123 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0583P)2 + 0.2157P] where P = (Fo2 + 2Fc2)/3 |
5225 reflections | (Δ/σ)max = 0.001 |
190 parameters | Δρmax = 0.55 e Å−3 |
0 restraints | Δρmin = −0.44 e Å−3 |
C16H11Cl2NOS | γ = 83.647 (5)° |
Mr = 336.22 | V = 739.3 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.879 (5) Å | Mo Kα radiation |
b = 9.667 (5) Å | µ = 0.58 mm−1 |
c = 9.979 (5) Å | T = 293 K |
α = 89.052 (5)° | 0.24 × 0.21 × 0.15 mm |
β = 78.161 (4)° |
Bruker APEXII CCD diffractometer | 5225 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4013 reflections with I > 2σ(I) |
Tmin = 0.871, Tmax = 0.917 | Rint = 0.026 |
18415 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.123 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.55 e Å−3 |
5225 reflections | Δρmin = −0.44 e Å−3 |
190 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.53450 (18) | 0.28937 (15) | 0.94205 (15) | 0.0366 (3) | |
H1 | 0.4546 | 0.2673 | 0.8911 | 0.044* | |
C2 | 0.6952 (2) | 0.14986 (15) | 1.12880 (14) | 0.0371 (3) | |
C3 | 0.6971 (3) | 0.01550 (17) | 1.18247 (17) | 0.0510 (4) | |
H3 | 0.5951 | −0.0277 | 1.1996 | 0.061* | |
C4 | 0.8473 (3) | −0.05324 (19) | 1.21016 (19) | 0.0622 (5) | |
H4 | 0.8466 | −0.1424 | 1.2467 | 0.075* | |
C5 | 0.9993 (3) | 0.0092 (2) | 1.18406 (19) | 0.0600 (5) | |
H5 | 1.1010 | −0.0374 | 1.2038 | 0.072* | |
C6 | 1.0008 (2) | 0.14161 (19) | 1.12835 (17) | 0.0469 (3) | |
H6 | 1.1037 | 0.1836 | 1.1106 | 0.056* | |
C7 | 0.84959 (19) | 0.21138 (14) | 1.09904 (14) | 0.0352 (3) | |
C8 | 0.79730 (18) | 0.41136 (14) | 0.94238 (15) | 0.0349 (3) | |
C9 | 0.66727 (17) | 0.35381 (13) | 0.87569 (14) | 0.0321 (2) | |
C10 | 0.6884 (2) | 0.39317 (17) | 0.72620 (15) | 0.0423 (3) | |
H10A | 0.6968 | 0.4924 | 0.7186 | 0.051* | |
H10B | 0.7978 | 0.3460 | 0.6767 | 0.051* | |
C11 | 0.5449 (2) | 0.35964 (15) | 0.65712 (14) | 0.0371 (3) | |
C12 | 0.55727 (19) | 0.24270 (15) | 0.57559 (15) | 0.0359 (3) | |
C13 | 0.42879 (19) | 0.21821 (15) | 0.50589 (15) | 0.0388 (3) | |
H13 | 0.4419 | 0.1402 | 0.4499 | 0.047* | |
C14 | 0.28122 (19) | 0.31163 (16) | 0.52118 (14) | 0.0390 (3) | |
C15 | 0.2600 (2) | 0.42737 (18) | 0.60401 (18) | 0.0477 (4) | |
H15 | 0.1583 | 0.4886 | 0.6158 | 0.057* | |
C16 | 0.3933 (2) | 0.45071 (17) | 0.66928 (17) | 0.0469 (4) | |
H16 | 0.3808 | 0.5302 | 0.7232 | 0.056* | |
N1 | 0.85975 (16) | 0.34776 (12) | 1.04633 (13) | 0.0375 (3) | |
H1A | 0.9155 | 0.3990 | 1.0879 | 0.045* | |
O1 | 0.84965 (17) | 0.52292 (12) | 0.89978 (14) | 0.0545 (3) | |
Cl1 | 0.73749 (6) | 0.11906 (5) | 0.55837 (6) | 0.06427 (15) | |
Cl2 | 0.11969 (6) | 0.27905 (6) | 0.43563 (5) | 0.05837 (14) | |
S1 | 0.49323 (5) | 0.24136 (4) | 1.11466 (4) | 0.04389 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0354 (7) | 0.0435 (7) | 0.0355 (7) | −0.0151 (5) | −0.0122 (5) | 0.0003 (5) |
C2 | 0.0443 (7) | 0.0377 (6) | 0.0304 (6) | −0.0118 (5) | −0.0059 (5) | 0.0013 (5) |
C3 | 0.0692 (11) | 0.0425 (8) | 0.0405 (8) | −0.0178 (8) | −0.0032 (7) | 0.0067 (6) |
C4 | 0.0933 (16) | 0.0444 (9) | 0.0444 (9) | −0.0023 (9) | −0.0077 (9) | 0.0139 (7) |
C5 | 0.0720 (13) | 0.0603 (11) | 0.0463 (9) | 0.0113 (9) | −0.0196 (9) | 0.0086 (8) |
C6 | 0.0460 (8) | 0.0559 (9) | 0.0417 (8) | −0.0047 (7) | −0.0169 (7) | 0.0046 (7) |
C7 | 0.0413 (7) | 0.0372 (6) | 0.0298 (6) | −0.0090 (5) | −0.0111 (5) | 0.0016 (5) |
C8 | 0.0351 (6) | 0.0342 (6) | 0.0405 (7) | −0.0127 (5) | −0.0153 (5) | 0.0023 (5) |
C9 | 0.0344 (6) | 0.0322 (6) | 0.0339 (6) | −0.0106 (5) | −0.0129 (5) | −0.0001 (5) |
C10 | 0.0475 (8) | 0.0506 (8) | 0.0355 (7) | −0.0246 (7) | −0.0142 (6) | 0.0037 (6) |
C11 | 0.0453 (7) | 0.0411 (7) | 0.0295 (6) | −0.0162 (6) | −0.0121 (5) | 0.0028 (5) |
C12 | 0.0359 (7) | 0.0376 (6) | 0.0369 (7) | −0.0105 (5) | −0.0103 (5) | 0.0015 (5) |
C13 | 0.0416 (7) | 0.0419 (7) | 0.0367 (7) | −0.0144 (6) | −0.0114 (6) | −0.0024 (5) |
C14 | 0.0392 (7) | 0.0492 (8) | 0.0328 (6) | −0.0151 (6) | −0.0121 (5) | 0.0086 (5) |
C15 | 0.0457 (8) | 0.0507 (9) | 0.0466 (8) | 0.0005 (7) | −0.0122 (7) | −0.0001 (7) |
C16 | 0.0563 (10) | 0.0449 (8) | 0.0416 (8) | −0.0057 (7) | −0.0144 (7) | −0.0072 (6) |
N1 | 0.0406 (6) | 0.0388 (6) | 0.0405 (6) | −0.0169 (5) | −0.0194 (5) | 0.0046 (5) |
O1 | 0.0638 (8) | 0.0471 (6) | 0.0703 (8) | −0.0323 (6) | −0.0422 (6) | 0.0212 (5) |
Cl1 | 0.0451 (2) | 0.0557 (3) | 0.0965 (4) | 0.00095 (18) | −0.0269 (2) | −0.0159 (2) |
Cl2 | 0.0465 (2) | 0.0776 (3) | 0.0608 (3) | −0.0192 (2) | −0.0275 (2) | 0.0075 (2) |
S1 | 0.03570 (19) | 0.0574 (2) | 0.0392 (2) | −0.01553 (16) | −0.00402 (14) | 0.00582 (15) |
C1—C9 | 1.3294 (19) | C8—C9 | 1.4901 (18) |
C1—S1 | 1.7508 (17) | C9—C10 | 1.514 (2) |
C1—H1 | 0.9300 | C10—C11 | 1.505 (2) |
C2—C7 | 1.388 (2) | C10—H10A | 0.9700 |
C2—C3 | 1.396 (2) | C10—H10B | 0.9700 |
C2—S1 | 1.7642 (18) | C11—C12 | 1.387 (2) |
C3—C4 | 1.368 (3) | C11—C16 | 1.389 (2) |
C3—H3 | 0.9300 | C12—C13 | 1.383 (2) |
C4—C5 | 1.376 (3) | C12—Cl1 | 1.7336 (17) |
C4—H4 | 0.9300 | C13—C14 | 1.375 (2) |
C5—C6 | 1.387 (3) | C13—H13 | 0.9300 |
C5—H5 | 0.9300 | C14—C15 | 1.377 (2) |
C6—C7 | 1.385 (2) | C14—Cl2 | 1.7295 (16) |
C6—H6 | 0.9300 | C15—C16 | 1.384 (2) |
C7—N1 | 1.4158 (19) | C15—H15 | 0.9300 |
C8—O1 | 1.2350 (17) | C16—H16 | 0.9300 |
C8—N1 | 1.3481 (19) | N1—H1A | 0.8600 |
C9—C1—S1 | 127.26 (11) | C11—C10—H10A | 108.3 |
C9—C1—H1 | 116.4 | C9—C10—H10A | 108.3 |
S1—C1—H1 | 116.4 | C11—C10—H10B | 108.3 |
C7—C2—C3 | 119.11 (15) | C9—C10—H10B | 108.3 |
C7—C2—S1 | 121.99 (12) | H10A—C10—H10B | 107.4 |
C3—C2—S1 | 118.67 (13) | C12—C11—C16 | 116.63 (14) |
C4—C3—C2 | 120.73 (17) | C12—C11—C10 | 123.35 (15) |
C4—C3—H3 | 119.6 | C16—C11—C10 | 119.97 (14) |
C2—C3—H3 | 119.6 | C13—C12—C11 | 122.51 (14) |
C3—C4—C5 | 120.14 (17) | C13—C12—Cl1 | 117.07 (12) |
C3—C4—H4 | 119.9 | C11—C12—Cl1 | 120.42 (12) |
C5—C4—H4 | 119.9 | C14—C13—C12 | 118.59 (14) |
C4—C5—C6 | 119.97 (18) | C14—C13—H13 | 120.7 |
C4—C5—H5 | 120.0 | C12—C13—H13 | 120.7 |
C6—C5—H5 | 120.0 | C13—C14—C15 | 121.28 (14) |
C7—C6—C5 | 120.20 (17) | C13—C14—Cl2 | 118.34 (12) |
C7—C6—H6 | 119.9 | C15—C14—Cl2 | 120.38 (13) |
C5—C6—H6 | 119.9 | C14—C15—C16 | 118.61 (16) |
C6—C7—C2 | 119.78 (14) | C14—C15—H15 | 120.7 |
C6—C7—N1 | 117.04 (13) | C16—C15—H15 | 120.7 |
C2—C7—N1 | 123.08 (13) | C15—C16—C11 | 122.33 (15) |
O1—C8—N1 | 118.83 (12) | C15—C16—H16 | 118.8 |
O1—C8—C9 | 117.93 (12) | C11—C16—H16 | 118.8 |
N1—C8—C9 | 123.23 (12) | C8—N1—C7 | 131.25 (11) |
C1—C9—C8 | 124.33 (13) | C8—N1—H1A | 114.4 |
C1—C9—C10 | 122.86 (12) | C7—N1—H1A | 114.4 |
C8—C9—C10 | 112.36 (11) | C1—S1—C2 | 101.45 (7) |
C11—C10—C9 | 115.75 (12) | ||
C7—C2—C3—C4 | 2.3 (2) | C16—C11—C12—C13 | 1.8 (2) |
S1—C2—C3—C4 | −172.38 (14) | C10—C11—C12—C13 | −175.75 (13) |
C2—C3—C4—C5 | −0.6 (3) | C16—C11—C12—Cl1 | −177.66 (12) |
C3—C4—C5—C6 | −0.6 (3) | C10—C11—C12—Cl1 | 4.7 (2) |
C4—C5—C6—C7 | 0.1 (3) | C11—C12—C13—C14 | −1.8 (2) |
C5—C6—C7—C2 | 1.6 (2) | Cl1—C12—C13—C14 | 177.71 (11) |
C5—C6—C7—N1 | 178.10 (15) | C12—C13—C14—C15 | −0.1 (2) |
C3—C2—C7—C6 | −2.8 (2) | C12—C13—C14—Cl2 | −179.09 (11) |
S1—C2—C7—C6 | 171.71 (12) | C13—C14—C15—C16 | 1.9 (2) |
C3—C2—C7—N1 | −179.04 (14) | Cl2—C14—C15—C16 | −179.17 (13) |
S1—C2—C7—N1 | −4.5 (2) | C14—C15—C16—C11 | −1.8 (3) |
S1—C1—C9—C8 | −7.0 (2) | C12—C11—C16—C15 | 0.0 (2) |
S1—C1—C9—C10 | −178.71 (12) | C10—C11—C16—C15 | 177.70 (15) |
O1—C8—C9—C1 | −141.76 (16) | O1—C8—N1—C7 | −167.01 (16) |
N1—C8—C9—C1 | 38.2 (2) | C9—C8—N1—C7 | 13.1 (2) |
O1—C8—C9—C10 | 30.69 (19) | C6—C7—N1—C8 | 135.73 (17) |
N1—C8—C9—C10 | −149.37 (15) | C2—C7—N1—C8 | −47.9 (2) |
C1—C9—C10—C11 | 2.2 (2) | C9—C1—S1—C2 | −51.65 (16) |
C8—C9—C10—C11 | −170.34 (13) | C7—C2—S1—C1 | 58.57 (13) |
C9—C10—C11—C12 | −98.99 (18) | C3—C2—S1—C1 | −126.89 (13) |
C9—C10—C11—C16 | 83.49 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···Cl1 | 0.97 | 2.64 | 3.103 (3) | 109 |
N1—H1A···O1i | 0.86 | 2.10 | 2.873 (2) | 149 |
Symmetry code: (i) −x+2, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C16H11Cl2NOS |
Mr | 336.22 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 7.879 (5), 9.667 (5), 9.979 (5) |
α, β, γ (°) | 89.052 (5), 78.161 (4), 83.647 (5) |
V (Å3) | 739.3 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.58 |
Crystal size (mm) | 0.24 × 0.21 × 0.15 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.871, 0.917 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 18415, 5225, 4013 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.781 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.123, 1.04 |
No. of reflections | 5225 |
No. of parameters | 190 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.55, −0.44 |
Computer programs: APEX2 (Bruker, 2004), APEX2 and SAINT (Bruker, 2004), SAINT and XPREP (Bruker, 2004), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10B···Cl1 | 0.97 | 2.64 | 3.103 (3) | 109 |
N1—H1A···O1i | 0.86 | 2.10 | 2.873 (2) | 149 |
Symmetry code: (i) −x+2, −y+1, −z+2. |
Footnotes
‡Additional correspondence author, e-mail: bhakthadoss@yahoo.com.
Acknowledgements
The authors thank Dr Babu Vargheese, SAIF, IIT, Madras, India, for the data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The background to the biology and related structures of thiazepin derivatives, has been described recently (Bakthadoss et al., 2013). In view of this biological importance, the crystal structure of the title compound has been carried out and the results are presented here.
Fig. 1. shows a displacement ellipsoid plot of (I), with the atom numbering scheme. The seven membered thiazepine ring (N1/S1/C1/C2/C7/C8/C9) adopts distorted twist-boat conformation as indicated by puckering parameters (Cremer & Pople, 1975): QT = 0.8962 (12) Å, ϕ2 = 353.2 (1)° and ϕ3 = 358.9 (3)°. The atom O1 deviates by 0.667 (1) Å from the least-squares plane of the thiazepin ring. The dihedral angle between the benzothiazepin ring system and the benzene ring is 78.6 (1)°. The atoms Cl1 and Cl2 deviate by 0.075 (1) and -0.006 (1) Å, respectively, from the plane of the attached benzene ring (C11–C16). The sum of angles at N1 atom of the thiazepin ring (360.0°) is in accordance with sp2 hybridization. The geometric parameters of the title molecule agree well with those reported for similar structures (Bakthadoss et al., 2013).
The molecular conformation is stabilized by a weak intramolecular C10—H10B···Cl1 hydrogen bond, which generates an S(5) ring motif (Bernstein et al., 1995). In the crystal packing, molecules are linked by N1—H1A···O1 hydrogen bonds into cyclic centrosymmetric R22(8) dimers (Fig. 2 and Table 1). The crystal packing is further stabilized by alternating π–π interactions with Cg1···Cg1ii = 3.740 (3) Å (symmetry code: (ii) = 2-x, -y, 2-z) and Cg2···Cg2iii = 3.882 (3) Å (symmetry code: (iii) = 1-x, 1-y, 1-z) forming supramolecular stacks along the a axis (Fig. 3; Cg1 and Cg2 are the centroids of the C2–C7 and C11–C16 benzene rings, respectively).