metal-organic compounds
Bromido(1,4,7,10,13-pentaazacyclohexadecane)cobalt(III) dibromide dihydrate
aDepartment of Chemistry, Faculty of Science, Fukuoka University, Nanakuma, Jonan-ku, Fukuoka 814-0180, Japan
*Correspondence e-mail: kurisaki@fukuoka-u.ac.jp
The title salt, [CoBr(C11H27N5)]Br2·2H2O, contains a complex cation with mirror symmetry and two Br− counter-anions that are likewise located on the mirror plane. The central CoIII atom of the complex cation has one Br− ion in an axial position, one N atom of the pentadentate macrocyclic ligand in the other axial position and four N atoms of the ligand in equatorial positions, defining a distorted octahedral coordination geometry. The macrocyclic ligand is coordinated to the CoIII atom within a 5, 6, 5 arrangement of chelate rings in the equatorial plane of the four N atoms. Due to symmetry, the configuration of the chiral N atoms is 1RS, 4SR, 10RS, 13SR. In the crystal, N—H⋯Br, O—H⋯Br and N—H⋯O hydrogen bonds between the complex cation, anions and lattice water molecules generate a three-dimensional network.
Related literature
For background to metal complexes with azamacrocycles, see: Mewis & Archida (2010). For related structures, see: Curtis et al. (1987a,b); Eigenbrot et al. (1988); Tahirov et al. (1993); Bombieri et al. (1982). For the synthesis of the macrocyclic ligand, see: Richman & Atkins (1974).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2008); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
10.1107/S1600536813004947/wm2723sup1.cif
contains datablocks I, global. DOI:Supporting information file. DOI: 10.1107/S1600536813004947/wm2723Isup2.tif
Structure factors: contains datablock I. DOI: 10.1107/S1600536813004947/wm2723Isup3.hkl
Supporting information file. DOI: 10.1107/S1600536813004947/wm2723Isup4.cdx
The ligand 1,4,7,10,13-pentaazacyclohexadecane pentahydrobromide was prepared according to the literature method (Richman & Atkins, 1974). The ligand (1.26 g, 2 mmol) was dissolved in water and treated with freshly prepared Na3[Co(CO3)3].3H2O (0.72 g, 2 mmol). The mixture was refluxed for 1 h and filtered. To the filtrate was added NH4Br in excess and the solution allowed to stand for several days whereupon dark violet crystals of the title compound were formed.
All H atoms attached to C and N atoms were placed geometrically (C—H = 0.97 and N—H = 0.91 Å) and were refined as riding with Uiso(H) = 1.2Ueq(C,N). The water H atoms were located in difference Fourier maps and were refined initially with restrains O—H = 0.85 (2) Å. In the last cycles of
they were eventually refined as riding, with Uiso(H) = 1.5Ueq(O).Data collection: CrystalClear (Rigaku, 2008); cell
CrystalClear (Rigaku, 2008); data reduction: CrystalClear (Rigaku, 2008); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: WinGX (Farrugia, 2012).[CoBr(C11H27N5)]Br2·2H2O | F(000) = 1120 |
Mr = 564.07 | Dx = 1.916 Mg m−3 |
Orthorhombic, Pnma | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2n | Cell parameters from 4654 reflections |
a = 13.139 (3) Å | θ = 3.1–27.5° |
b = 9.6674 (18) Å | µ = 7.02 mm−1 |
c = 15.393 (3) Å | T = 296 K |
V = 1955.2 (7) Å3 | Prism, dark violet |
Z = 4 | 0.40 × 0.22 × 0.14 mm |
Rigaku Saturn724+ diffractometer | 2370 independent reflections |
Radiation source: rotating anode | 1964 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.075 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
dtprofit.ref scans | h = −17→17 |
Absorption correction: numerical (NUMABS; Rigaku, 1999) | k = −12→12 |
Tmin = 0.189, Tmax = 0.501 | l = −19→19 |
28744 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.031 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.076 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0392P)2] where P = (Fo2 + 2Fc2)/3 |
2370 reflections | (Δ/σ)max = 0.001 |
109 parameters | Δρmax = 0.89 e Å−3 |
4 restraints | Δρmin = −0.88 e Å−3 |
[CoBr(C11H27N5)]Br2·2H2O | V = 1955.2 (7) Å3 |
Mr = 564.07 | Z = 4 |
Orthorhombic, Pnma | Mo Kα radiation |
a = 13.139 (3) Å | µ = 7.02 mm−1 |
b = 9.6674 (18) Å | T = 296 K |
c = 15.393 (3) Å | 0.40 × 0.22 × 0.14 mm |
Rigaku Saturn724+ diffractometer | 2370 independent reflections |
Absorption correction: numerical (NUMABS; Rigaku, 1999) | 1964 reflections with I > 2σ(I) |
Tmin = 0.189, Tmax = 0.501 | Rint = 0.075 |
28744 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 4 restraints |
wR(F2) = 0.076 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.89 e Å−3 |
2370 reflections | Δρmin = −0.88 e Å−3 |
109 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.97038 (3) | 0.25 | 0.51348 (3) | 0.04287 (14) | |
Br2 | 0.44795 (3) | 0.25 | 0.38291 (3) | 0.04299 (14) | |
Br3 | 0.89341 (4) | 0.25 | 0.77417 (3) | 0.04833 (15) | |
Co | 0.78735 (4) | 0.25 | 0.50953 (3) | 0.02053 (13) | |
OW | 0.4692 (2) | 0.0362 (3) | 0.20106 (17) | 0.0743 (9) | |
HW1 | 0.5085 | −0.0263 | 0.2156 | 0.111* | |
HW2 | 0.4701 | 0.0986 | 0.2416 | 0.111* | |
N1 | 0.6374 (2) | 0.25 | 0.5240 (2) | 0.0227 (7) | |
H1 | 0.6083 | 0.25 | 0.4703 | 0.027* | |
N2 | 0.78844 (16) | 0.0990 (2) | 0.59473 (15) | 0.0272 (5) | |
H2 | 0.8333 | 0.1219 | 0.6374 | 0.033* | |
N3 | 0.79176 (17) | 0.1035 (2) | 0.42054 (15) | 0.0298 (5) | |
H3 | 0.8556 | 0.1076 | 0.3977 | 0.036* | |
C1 | 0.60554 (19) | 0.1226 (3) | 0.57002 (19) | 0.0309 (6) | |
H1A | 0.5957 | 0.0482 | 0.5286 | 0.037* | |
H1B | 0.5416 | 0.1385 | 0.5998 | 0.037* | |
C2 | 0.6869 (2) | 0.0825 (3) | 0.63512 (19) | 0.0344 (7) | |
H2A | 0.6818 | 0.1408 | 0.6862 | 0.041* | |
H2B | 0.6773 | −0.0129 | 0.653 | 0.041* | |
C3 | 0.8268 (2) | −0.0279 (3) | 0.5511 (2) | 0.0395 (7) | |
H3A | 0.8063 | −0.109 | 0.5838 | 0.047* | |
H3B | 0.9006 | −0.0258 | 0.5488 | 0.047* | |
C4 | 0.7838 (2) | −0.0351 (3) | 0.4602 (2) | 0.0396 (7) | |
H4A | 0.8217 | −0.1018 | 0.4259 | 0.047* | |
H4B | 0.7132 | −0.0641 | 0.4621 | 0.047* | |
C5 | 0.7214 (2) | 0.1176 (3) | 0.34490 (19) | 0.0369 (7) | |
H5A | 0.6517 | 0.1154 | 0.3656 | 0.044* | |
H5B | 0.7309 | 0.0392 | 0.3064 | 0.044* | |
C6 | 0.7384 (4) | 0.25 | 0.2943 (3) | 0.0452 (12) | |
H6A | 0.6932 | 0.25 | 0.2445 | 0.054* | |
H6B | 0.8076 | 0.25 | 0.2724 | 0.054* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0225 (2) | 0.0483 (3) | 0.0578 (3) | 0 | 0.00093 (19) | 0 |
Br2 | 0.0392 (3) | 0.0353 (3) | 0.0546 (3) | 0 | −0.0198 (2) | 0 |
Br3 | 0.0605 (3) | 0.0443 (3) | 0.0402 (3) | 0 | −0.0220 (2) | 0 |
Co | 0.0186 (3) | 0.0205 (3) | 0.0225 (3) | 0 | 0.00025 (19) | 0 |
OW | 0.082 (2) | 0.087 (2) | 0.0533 (17) | 0.0336 (16) | −0.0023 (14) | 0.0002 (15) |
N1 | 0.0247 (16) | 0.0235 (16) | 0.0198 (16) | 0 | 0.0005 (13) | 0 |
N2 | 0.0270 (12) | 0.0243 (12) | 0.0301 (13) | −0.0013 (9) | −0.0066 (10) | 0.0031 (10) |
N3 | 0.0284 (12) | 0.0313 (13) | 0.0297 (13) | 0.0026 (10) | 0.0031 (10) | −0.0055 (11) |
C1 | 0.0261 (14) | 0.0318 (16) | 0.0349 (16) | −0.0057 (11) | 0.0035 (12) | 0.0017 (12) |
C2 | 0.0421 (17) | 0.0318 (16) | 0.0293 (16) | −0.0035 (13) | 0.0006 (13) | 0.0094 (13) |
C3 | 0.0450 (18) | 0.0248 (15) | 0.049 (2) | 0.0108 (13) | −0.0048 (15) | 0.0010 (14) |
C4 | 0.0480 (19) | 0.0256 (16) | 0.0451 (18) | 0.0056 (13) | 0.0024 (16) | −0.0090 (14) |
C5 | 0.0392 (17) | 0.0436 (18) | 0.0280 (15) | 0.0022 (14) | 0.0001 (13) | −0.0145 (14) |
C6 | 0.049 (3) | 0.062 (3) | 0.025 (2) | 0 | 0.000 (2) | 0 |
Br1—Co | 2.4056 (8) | C1—C2 | 1.516 (4) |
Co—N2i | 1.962 (2) | C1—H1A | 0.97 |
Co—N2 | 1.962 (2) | C1—H1B | 0.97 |
Co—N3 | 1.971 (2) | C2—H2A | 0.97 |
Co—N3i | 1.971 (2) | C2—H2B | 0.97 |
Co—N1 | 1.982 (3) | C3—C4 | 1.512 (4) |
OW—HW1 | 0.8249 | C3—H3A | 0.97 |
OW—HW2 | 0.8682 | C3—H3B | 0.97 |
N1—C1i | 1.482 (3) | C4—H4A | 0.97 |
N1—C1 | 1.482 (3) | C4—H4B | 0.97 |
N1—H1 | 0.91 | C5—C6 | 1.516 (4) |
N2—C2 | 1.481 (3) | C5—H5A | 0.97 |
N2—C3 | 1.486 (3) | C5—H5B | 0.97 |
N2—H2 | 0.91 | C6—C5i | 1.516 (4) |
N3—C4 | 1.476 (4) | C6—H6A | 0.97 |
N3—C5 | 1.493 (4) | C6—H6B | 0.97 |
N3—H3 | 0.91 | ||
N2i—Co—N2 | 96.11 (14) | N1—C1—H1A | 109.8 |
N2i—Co—N3 | 177.03 (10) | C2—C1—H1A | 109.8 |
N2—Co—N3 | 85.97 (10) | N1—C1—H1B | 109.8 |
N2i—Co—N3i | 85.97 (10) | C2—C1—H1B | 109.8 |
N2—Co—N3i | 177.03 (10) | H1A—C1—H1B | 108.3 |
N3—Co—N3i | 91.87 (14) | N2—C2—C1 | 109.3 (2) |
N2i—Co—N1 | 86.12 (9) | N2—C2—H2A | 109.8 |
N2—Co—N1 | 86.12 (9) | C1—C2—H2A | 109.8 |
N3—Co—N1 | 96.15 (9) | N2—C2—H2B | 109.8 |
N3i—Co—N1 | 96.15 (9) | C1—C2—H2B | 109.8 |
N2i—Co—Br1 | 88.61 (6) | H2A—C2—H2B | 108.3 |
N2—Co—Br1 | 88.61 (6) | N2—C3—C4 | 109.3 (2) |
N3—Co—Br1 | 89.32 (7) | N2—C3—H3A | 109.8 |
N3i—Co—Br1 | 89.32 (7) | C4—C3—H3A | 109.8 |
N1—Co—Br1 | 172.11 (9) | N2—C3—H3B | 109.8 |
HW1—OW—HW2 | 107.8 | C4—C3—H3B | 109.8 |
C1i—N1—C1 | 112.5 (3) | H3A—C3—H3B | 108.3 |
C1i—N1—Co | 109.54 (16) | N3—C4—C3 | 108.3 (2) |
C1—N1—Co | 109.54 (16) | N3—C4—H4A | 110 |
C1i—N1—H1 | 108.4 | C3—C4—H4A | 110 |
C1—N1—H1 | 108.4 | N3—C4—H4B | 110 |
Co—N1—H1 | 108.4 | C3—C4—H4B | 110 |
C2—N2—C3 | 113.9 (2) | H4A—C4—H4B | 108.4 |
C2—N2—Co | 110.77 (16) | N3—C5—C6 | 112.8 (3) |
C3—N2—Co | 108.34 (18) | N3—C5—H5A | 109 |
C2—N2—H2 | 107.9 | C6—C5—H5A | 109 |
C3—N2—H2 | 107.9 | N3—C5—H5B | 109 |
Co—N2—H2 | 107.9 | C6—C5—H5B | 109 |
C4—N3—C5 | 111.2 (2) | H5A—C5—H5B | 107.8 |
C4—N3—Co | 111.29 (18) | C5—C6—C5i | 115.3 (4) |
C5—N3—Co | 117.28 (17) | C5—C6—H6A | 108.4 |
C4—N3—H3 | 105.3 | C5i—C6—H6A | 108.4 |
C5—N3—H3 | 105.3 | C5—C6—H6B | 108.4 |
Co—N3—H3 | 105.3 | C5i—C6—H6B | 108.4 |
N1—C1—C2 | 109.2 (2) | H6A—C6—H6B | 107.5 |
Symmetry code: (i) x, −y+1/2, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br2 | 0.91 | 2.5 | 3.303 (3) | 147 |
N2—H2···Br3 | 0.91 | 2.57 | 3.415 (2) | 155 |
N3—H3···OWii | 0.91 | 2.24 | 3.060 (4) | 150 |
OW—HW2···Br2 | 0.87 | 2.64 | 3.491 (3) | 168 |
OW—HW1···Br3iii | 0.82 | 2.67 | 3.489 (3) | 170 |
Symmetry codes: (ii) x+1/2, y, −z+1/2; (iii) −x+3/2, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | [CoBr(C11H27N5)]Br2·2H2O |
Mr | 564.07 |
Crystal system, space group | Orthorhombic, Pnma |
Temperature (K) | 296 |
a, b, c (Å) | 13.139 (3), 9.6674 (18), 15.393 (3) |
V (Å3) | 1955.2 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 7.02 |
Crystal size (mm) | 0.40 × 0.22 × 0.14 |
Data collection | |
Diffractometer | Rigaku Saturn724+ diffractometer |
Absorption correction | Numerical (NUMABS; Rigaku, 1999) |
Tmin, Tmax | 0.189, 0.501 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 28744, 2370, 1964 |
Rint | 0.075 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.076, 1.02 |
No. of reflections | 2370 |
No. of parameters | 109 |
No. of restraints | 4 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.89, −0.88 |
Computer programs: CrystalClear (Rigaku, 2008), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), WinGX (Farrugia, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···Br2 | 0.91 | 2.5 | 3.303 (3) | 147.4 |
N2—H2···Br3 | 0.91 | 2.57 | 3.415 (2) | 155.3 |
N3—H3···OWi | 0.91 | 2.24 | 3.060 (4) | 149.7 |
OW—HW2···Br2 | 0.87 | 2.64 | 3.491 (3) | 167.7 |
OW—HW1···Br3ii | 0.82 | 2.67 | 3.489 (3) | 169.9 |
Symmetry codes: (i) x+1/2, y, −z+1/2; (ii) −x+3/2, −y, z−1/2. |
Acknowledgements
This work was partially supported by Grants-in-Aid for Scientific Research (C) 22550088 and (B) 23300319 from the Japan Society for the Promotion of Science.
References
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Azamacrocycles are popular ligands for the preparation of metal complexes because of their stability and defined geometry. These ligands often possess enough conformational freedom for their intended functionalities (Mewis & Archida, 2010). The coordination of pentaaza macrocycles to the cobalt(III) ion can result in a number of isomeric forms. The complexes formed between cobalt(III) and a series of eight pentaaza macrocycles with ring sizes varying from 15- to 20-membered rings have been investigated (Curtis et al., 1987a,b). These cobalt(III) complexes may exist as three diastereoisomers, i.e. meso-syn, meso-anti, and the racemic isomer. For the cobalt(III) complex of 1,4,7,11,14-pentaazacycloheptadecane ([17]aneN5) it has been reported that two isomeric forms could be isolated. The crystal structures of these two isomers, [CoBr([17]aneN5)][ZnBr4] (Eigenbrot et al., 1988) and [CoCl([17]aneN5)]Cl(ClO4) (Tahirov et al., 1993), have been determined as the racemic and the meso-anti isomer, respectively. Furthermore, the cobalt(III) complex of 1,4,7,11,14-pentaazacyclohexadecane ([16]aneN5), [CoCl([16]aneN5)](ClO4)2, crystallized as the meso-syn isomer (Bombieri et al., 1982).
In the title complex, [CoBr(C11H27N5)]Br2.2H2O, the CoIII atom is surrounded by one Br- anion and N atoms of the macrocyclic ligand to form a distorted octahedral environment (Fig.1). The Co—N(axial) bond in the complex is longer than the Co—N(equatorial) bonds, presumably caused by the trans effect of the Br atom. The average Co—N(equatorial) distance of 1.967 Å is shorter than that in cobalt(III) complexes of 1,4,7,11,14-pentaazacycloheptadecane (Eigenbrot et al., 1988) and 1,4,7,11,15-pentaazacyclooctadecane (Curtis et al., 1987a). The macrocyclic ligand adopts a stable conformation with the one six-membered chelate ring in chair form and four five-membered chelate rings in gauche forms. The macrocyclic ligand is coordinated in a configuration with five-, six-, and five-membered chelate rings in the equatorial plane. The deviation of the CoIII atom from the equatorial plane is 0.03 A. The N3 and N3* atoms have opposite chirality giving the meso-syn diastereoisomer. The macrocyclic ligand coordinates in the meso-syn configuration with hydrogen atoms on N2, N2*, N3, and N3* on the same side of the equatorial plane relative to the axially coordinating bromide anion. Due to mirror symmetry of the entire complec cation, the configurations of the four chiral amine N atoms are 1RS, 4SR, 10RS, and 13SR. Hydrogen bonds between N atoms of the macrocyclic ligand, water molecules and bromide counter anions exists (Fig. 2; Table 1), stabilizing the crystal packing within a three-dimensional network.