organic compounds
6-(3,5-Dimethoxybenzylamino)-9-(oxan-2-yl)-9H-purine
aDepartment of Inorganic Chemistry, Faculty of Science, Palacký University, 17. listopadu 12, CZ-771 46 Olomouc, Czech Republic, and bDepartment of Cell Biology and Genetics, Faculty of Science, Palacký University, Šlechtitelů 11, CZ-783 71 Olomouc, Czech Republic
*Correspondence e-mail: zdenek.travnicek@upol.cz
The molecule of the title compound, C19H23N5O3, contains six-membered pyrimidine and five-membered imidazole rings merged into the essentially planar purine skeleton (r.m.s. deviation = 0.01 Å). In the crystal, pairs of N—H⋯N hydrogen bonds link molecules into inversion dimers. The dimers are linked via C—H⋯O hydrogen bonds, forming double-stranded chains propagating along [001]. These chains are linked via C—H⋯π and parallel slipped π–π interactions [centroid–centroid distance = 3.467 (1) Å; slippage 0.519 Å], forming a three-dimensional network.
Related literature
For the alternative synthetic procedure and biological activity of the title compound, see: Szüčová et al. (2009). For the structures of similar compounds, see: Soriano-Garcia et al. (2003); Taddei et al. (2004). For puckering parameters, see: Cremer & Pople (1975).
Experimental
Crystal data
|
Refinement
|
Data collection: CrysAlis PRO (Agilent, 2012); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2011); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536813006697/zq2196sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813006697/zq2196Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813006697/zq2196Isup3.cml
The title compound, synthesized with the aim of its possible utilization as a suitable ligand in coordination chemistry of transition metals, was prepared by a slightly modified method reported by Szüčová et al., 2009. The starting compounds 6-chloropurine and 3,4-dihydro-2H-pyrane (a molar ratio of 1:2) were stirred in a minimum volume of ethanol (15 min, laboratory temperature) and then CF3COOH (1.30 molar equivalent of 6-chloropurine) was slowly poured. The reaction mixture was neutralized by 10% NH4OH after 24 h of stirring at laboratory temperature. The solvents were evaporated and yellowish product was washed (distilled water, methanol, diethyl ether) and dried in desiccator over P4O10. The obtained 6-chloro-9-(tetrahydropyran-2-yl)-9H-purine was dissolved in a minimum volume of N,N`-dimethylformamide and 3,5-dimethoxybenzylamine (1.33 molar equivalent) and triethylamine (1.67 molar equivalent) were poured in. The reaction mixture was stirred at 90 °C for 150 min and then it was evaporated to dryness. The solid was suspended in cold distilled water, filtered off, washed (distilled water, methanol, diethyl ether) and dried in desiccator over P4O10. The powder product was recrystallized from ethanol and the obtained microcrystals, suitable for single-crystal X-ray analysis, were collected by filtration. Analysis calculated for C19H23N5O3: C 61.8, H 6.3, N 19.0%; found: C 61.7, H 6.4, N 18.8%. Elemental analysis (C, H, N) was performed on a Thermo Scientific Flash 2000 CHNO-S Analyzer.
Non-hydrogen atoms were refined anisotropically and hydrogen atoms were located in difference maps and refined using the riding model with C—H = 0.95 (CH), C—H = 0.99 (CH2), C—H = 0.98 (CH3) Å, and N—H = 0.88 Å, with Uiso(H) = 1.2Ueq(CH, CH2, NH) and 1.5Ueq(CH3). The maximum and minimum residual electron density peaks of 0.45 and -0.22 e Å-3, respectively, were located 0.93 Å and 0.74 Å from the C21 and C19 atoms, respectively.
Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis PRO (Agilent, 2012); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2011); software used to prepare material for publication: publCIF (Westrip, 2010).C19H23N5O3 | Z = 2 |
Mr = 369.42 | F(000) = 392 |
Triclinic, P1 | Dx = 1.356 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.6978 (3) Å | Cell parameters from 6498 reflections |
b = 8.8318 (3) Å | θ = 3.0–31.7° |
c = 12.1517 (4) Å | µ = 0.10 mm−1 |
α = 84.808 (3)° | T = 110 K |
β = 78.674 (3)° | Prism, colourless |
γ = 82.039 (3)° | 0.40 × 0.40 × 0.35 mm |
V = 904.53 (5) Å3 |
Agilent Xcalibur Sapphire2 diffractometer | 3177 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2784 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.010 |
Detector resolution: 8.3611 pixels mm-1 | θmax = 25.0°, θmin = 3.0° |
ω scans | h = −8→10 |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012). | k = −10→9 |
Tmin = 0.963, Tmax = 0.968 | l = −14→14 |
6684 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.116 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0525P)2 + 0.5406P] where P = (Fo2 + 2Fc2)/3 |
3177 reflections | (Δ/σ)max < 0.001 |
246 parameters | Δρmax = 0.45 e Å−3 |
0 restraints | Δρmin = −0.22 e Å−3 |
C19H23N5O3 | γ = 82.039 (3)° |
Mr = 369.42 | V = 904.53 (5) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.6978 (3) Å | Mo Kα radiation |
b = 8.8318 (3) Å | µ = 0.10 mm−1 |
c = 12.1517 (4) Å | T = 110 K |
α = 84.808 (3)° | 0.40 × 0.40 × 0.35 mm |
β = 78.674 (3)° |
Agilent Xcalibur Sapphire2 diffractometer | 3177 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012). | 2784 reflections with I > 2σ(I) |
Tmin = 0.963, Tmax = 0.968 | Rint = 0.010 |
6684 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 0 restraints |
wR(F2) = 0.116 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.45 e Å−3 |
3177 reflections | Δρmin = −0.22 e Å−3 |
246 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.34333 (13) | 0.54945 (15) | 0.18751 (10) | 0.0325 (3) | |
N1 | 0.74662 (17) | 0.93176 (17) | 0.56497 (14) | 0.0343 (4) | |
O2 | 0.86794 (14) | 0.66871 (15) | 0.06254 (11) | 0.0348 (3) | |
C2 | 0.7939 (2) | 1.0254 (2) | 0.62854 (19) | 0.0393 (5) | |
H2 | 0.7252 | 1.1178 | 0.6431 | 0.047* | |
N3 | 0.92245 (18) | 1.00924 (17) | 0.67466 (14) | 0.0347 (4) | |
O3 | 1.14994 (17) | 0.82537 (18) | 0.87030 (12) | 0.0457 (4) | |
C4 | 1.01114 (19) | 0.87587 (19) | 0.64793 (14) | 0.0253 (4) | |
C5 | 0.98030 (19) | 0.76782 (18) | 0.58273 (14) | 0.0240 (4) | |
N6 | 0.79042 (16) | 0.70162 (17) | 0.47898 (12) | 0.0289 (3) | |
H6 | 0.8574 | 0.6235 | 0.4525 | 0.035* | |
C6 | 0.83853 (19) | 0.79912 (19) | 0.54048 (14) | 0.0260 (4) | |
N7 | 1.09793 (16) | 0.64320 (16) | 0.57585 (12) | 0.0269 (3) | |
C8 | 1.19489 (19) | 0.67977 (19) | 0.63655 (15) | 0.0265 (4) | |
H8 | 1.2878 | 0.6148 | 0.6480 | 0.032* | |
N9 | 1.15153 (16) | 0.81862 (15) | 0.68192 (12) | 0.0250 (3) | |
C9 | 0.6313 (2) | 0.7216 (2) | 0.45512 (15) | 0.0302 (4) | |
H9A | 0.5858 | 0.8299 | 0.4635 | 0.036* | |
H9B | 0.5652 | 0.6577 | 0.5113 | 0.036* | |
C10 | 0.62444 (19) | 0.67918 (18) | 0.33892 (14) | 0.0245 (4) | |
C11 | 0.48482 (19) | 0.63085 (18) | 0.32182 (14) | 0.0244 (4) | |
H11 | 0.3985 | 0.6226 | 0.3826 | 0.029* | |
C12 | 0.47421 (19) | 0.59515 (18) | 0.21484 (15) | 0.0251 (4) | |
C13 | 0.6021 (2) | 0.60276 (19) | 0.12598 (15) | 0.0270 (4) | |
H13 | 0.5954 | 0.5746 | 0.0536 | 0.032* | |
C14 | 0.73869 (19) | 0.65179 (19) | 0.14429 (15) | 0.0262 (4) | |
C15 | 0.75085 (19) | 0.69009 (18) | 0.25110 (14) | 0.0255 (4) | |
H15 | 0.8452 | 0.7233 | 0.2632 | 0.031* | |
C16 | 0.2009 (2) | 0.5642 (2) | 0.26940 (16) | 0.0374 (5) | |
H16A | 0.1155 | 0.5309 | 0.2391 | 0.056* | |
H16B | 0.1729 | 0.6716 | 0.2877 | 0.056* | |
H16C | 0.2164 | 0.5004 | 0.3375 | 0.056* | |
C17 | 0.8598 (2) | 0.6274 (3) | −0.04723 (16) | 0.0421 (5) | |
H17A | 0.9599 | 0.6404 | −0.0984 | 0.063* | |
H17B | 0.7734 | 0.6933 | −0.0751 | 0.063* | |
H17C | 0.8403 | 0.5202 | −0.0433 | 0.063* | |
C18 | 1.2218 (2) | 0.88515 (19) | 0.76217 (15) | 0.0278 (4) | |
H18 | 1.1926 | 0.9988 | 0.7569 | 0.033* | |
C19 | 1.2010 (3) | 0.8915 (3) | 0.95875 (19) | 0.0599 (7) | |
H19A | 1.1479 | 0.8498 | 1.0327 | 0.072* | |
H19B | 1.1712 | 1.0039 | 0.9541 | 0.072* | |
C20 | 1.3771 (3) | 0.8561 (3) | 0.9489 (2) | 0.0600 (7) | |
H20A | 1.4064 | 0.7439 | 0.9578 | 0.072* | |
H20B | 1.4112 | 0.9037 | 1.0093 | 0.072* | |
C21 | 1.4591 (3) | 0.9167 (3) | 0.8360 (2) | 0.0486 (6) | |
H21A | 1.5746 | 0.8868 | 0.8279 | 0.058* | |
H21B | 1.4389 | 1.0300 | 0.8302 | 0.058* | |
C22 | 1.3974 (2) | 0.8509 (2) | 0.74142 (18) | 0.0381 (5) | |
H22A | 1.4431 | 0.8983 | 0.6674 | 0.046* | |
H22B | 1.4289 | 0.7388 | 0.7412 | 0.046* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0209 (6) | 0.0443 (8) | 0.0359 (7) | −0.0083 (5) | −0.0071 (5) | −0.0122 (6) |
N1 | 0.0259 (8) | 0.0266 (8) | 0.0536 (10) | 0.0034 (6) | −0.0173 (7) | −0.0084 (7) |
O2 | 0.0270 (7) | 0.0448 (8) | 0.0353 (7) | −0.0124 (6) | −0.0040 (5) | −0.0088 (6) |
C2 | 0.0283 (10) | 0.0256 (9) | 0.0678 (14) | 0.0061 (7) | −0.0193 (9) | −0.0143 (9) |
N3 | 0.0269 (8) | 0.0245 (8) | 0.0561 (10) | 0.0023 (6) | −0.0157 (7) | −0.0123 (7) |
O3 | 0.0487 (9) | 0.0562 (9) | 0.0373 (8) | −0.0194 (7) | −0.0102 (6) | −0.0057 (7) |
C4 | 0.0207 (8) | 0.0224 (8) | 0.0341 (9) | −0.0019 (6) | −0.0082 (7) | −0.0033 (7) |
C5 | 0.0209 (8) | 0.0224 (8) | 0.0295 (9) | −0.0012 (6) | −0.0070 (7) | −0.0029 (7) |
N6 | 0.0231 (7) | 0.0306 (8) | 0.0360 (8) | 0.0043 (6) | −0.0145 (6) | −0.0101 (6) |
C6 | 0.0225 (8) | 0.0257 (9) | 0.0310 (9) | −0.0008 (7) | −0.0084 (7) | −0.0031 (7) |
N7 | 0.0221 (7) | 0.0256 (7) | 0.0347 (8) | 0.0019 (6) | −0.0109 (6) | −0.0068 (6) |
C8 | 0.0227 (8) | 0.0219 (8) | 0.0367 (9) | 0.0018 (6) | −0.0115 (7) | −0.0054 (7) |
N9 | 0.0221 (7) | 0.0213 (7) | 0.0344 (8) | −0.0014 (5) | −0.0118 (6) | −0.0046 (6) |
C9 | 0.0217 (8) | 0.0357 (10) | 0.0352 (10) | 0.0016 (7) | −0.0116 (7) | −0.0069 (8) |
C10 | 0.0233 (8) | 0.0177 (8) | 0.0340 (9) | 0.0040 (6) | −0.0132 (7) | −0.0034 (7) |
C11 | 0.0214 (8) | 0.0205 (8) | 0.0316 (9) | 0.0022 (6) | −0.0078 (7) | −0.0039 (7) |
C12 | 0.0215 (8) | 0.0202 (8) | 0.0363 (9) | −0.0013 (6) | −0.0119 (7) | −0.0044 (7) |
C13 | 0.0264 (9) | 0.0259 (9) | 0.0312 (9) | −0.0017 (7) | −0.0104 (7) | −0.0059 (7) |
C14 | 0.0224 (8) | 0.0223 (8) | 0.0341 (9) | −0.0014 (6) | −0.0064 (7) | −0.0026 (7) |
C15 | 0.0214 (8) | 0.0200 (8) | 0.0378 (10) | −0.0006 (6) | −0.0131 (7) | −0.0027 (7) |
C16 | 0.0238 (9) | 0.0543 (12) | 0.0373 (10) | −0.0112 (8) | −0.0048 (8) | −0.0116 (9) |
C17 | 0.0347 (10) | 0.0602 (13) | 0.0348 (10) | −0.0167 (9) | −0.0037 (8) | −0.0096 (9) |
C18 | 0.0311 (9) | 0.0207 (8) | 0.0360 (10) | −0.0055 (7) | −0.0144 (8) | −0.0031 (7) |
C19 | 0.0812 (18) | 0.0688 (16) | 0.0379 (12) | −0.0238 (14) | −0.0180 (12) | −0.0101 (11) |
C20 | 0.0923 (19) | 0.0450 (13) | 0.0620 (15) | −0.0279 (13) | −0.0523 (14) | 0.0076 (11) |
C21 | 0.0400 (12) | 0.0424 (12) | 0.0728 (16) | −0.0082 (9) | −0.0319 (11) | −0.0014 (11) |
C22 | 0.0238 (9) | 0.0453 (11) | 0.0477 (12) | −0.0038 (8) | −0.0140 (8) | −0.0015 (9) |
O1—C12 | 1.3672 (19) | C11—C12 | 1.388 (2) |
O1—C16 | 1.427 (2) | C11—H11 | 0.9500 |
N1—C2 | 1.336 (2) | C12—C13 | 1.394 (2) |
N1—C6 | 1.345 (2) | C13—C14 | 1.383 (2) |
O2—C14 | 1.362 (2) | C13—H13 | 0.9500 |
O2—C17 | 1.432 (2) | C14—C15 | 1.398 (2) |
C2—N3 | 1.331 (2) | C15—H15 | 0.9500 |
C2—H2 | 0.9500 | C16—H16A | 0.9800 |
N3—C4 | 1.344 (2) | C16—H16B | 0.9800 |
O3—C18 | 1.428 (2) | C16—H16C | 0.9800 |
O3—C19 | 1.438 (2) | C17—H17A | 0.9800 |
C4—C5 | 1.379 (2) | C17—H17B | 0.9800 |
C4—N9 | 1.381 (2) | C17—H17C | 0.9800 |
C5—N7 | 1.392 (2) | C18—C22 | 1.491 (2) |
C5—C6 | 1.410 (2) | C18—H18 | 1.0000 |
N6—C6 | 1.347 (2) | C19—C20 | 1.503 (4) |
N6—C9 | 1.453 (2) | C19—H19A | 0.9900 |
N6—H6 | 0.8800 | C19—H19B | 0.9900 |
N7—C8 | 1.312 (2) | C20—C21 | 1.504 (3) |
C8—N9 | 1.365 (2) | C20—H20A | 0.9900 |
C8—H8 | 0.9500 | C20—H20B | 0.9900 |
N9—C18 | 1.451 (2) | C21—C22 | 1.548 (3) |
C9—C10 | 1.508 (2) | C21—H21A | 0.9900 |
C9—H9A | 0.9900 | C21—H21B | 0.9900 |
C9—H9B | 0.9900 | C22—H22A | 0.9900 |
C10—C15 | 1.381 (2) | C22—H22B | 0.9900 |
C10—C11 | 1.400 (2) | ||
C12—O1—C16 | 117.27 (13) | C13—C14—C15 | 120.74 (16) |
C2—N1—C6 | 118.32 (15) | C10—C15—C14 | 119.37 (15) |
C14—O2—C17 | 116.38 (13) | C10—C15—H15 | 120.3 |
N3—C2—N1 | 129.90 (16) | C14—C15—H15 | 120.3 |
N3—C2—H2 | 115.0 | O1—C16—H16A | 109.5 |
N1—C2—H2 | 115.0 | O1—C16—H16B | 109.5 |
C2—N3—C4 | 109.91 (15) | H16A—C16—H16B | 109.5 |
C18—O3—C19 | 111.26 (15) | O1—C16—H16C | 109.5 |
N3—C4—C5 | 127.40 (15) | H16A—C16—H16C | 109.5 |
N3—C4—N9 | 126.56 (15) | H16B—C16—H16C | 109.5 |
C5—C4—N9 | 106.04 (14) | O2—C17—H17A | 109.5 |
C4—C5—N7 | 110.73 (14) | O2—C17—H17B | 109.5 |
C4—C5—C6 | 116.57 (15) | H17A—C17—H17B | 109.5 |
N7—C5—C6 | 132.65 (15) | O2—C17—H17C | 109.5 |
C6—N6—C9 | 121.98 (14) | H17A—C17—H17C | 109.5 |
C6—N6—H6 | 119.0 | H17B—C17—H17C | 109.5 |
C9—N6—H6 | 119.0 | O3—C18—N9 | 105.55 (13) |
N1—C6—N6 | 119.01 (15) | O3—C18—C22 | 112.37 (15) |
N1—C6—C5 | 117.88 (15) | N9—C18—C22 | 112.58 (15) |
N6—C6—C5 | 123.10 (15) | O3—C18—H18 | 108.7 |
C8—N7—C5 | 103.34 (14) | N9—C18—H18 | 108.7 |
N7—C8—N9 | 114.60 (14) | C22—C18—H18 | 108.7 |
N7—C8—H8 | 122.7 | O3—C19—C20 | 110.3 (2) |
N9—C8—H8 | 122.7 | O3—C19—H19A | 109.6 |
C8—N9—C4 | 105.29 (13) | C20—C19—H19A | 109.6 |
C8—N9—C18 | 128.47 (14) | O3—C19—H19B | 109.6 |
C4—N9—C18 | 125.68 (14) | C20—C19—H19B | 109.6 |
N6—C9—C10 | 113.44 (14) | H19A—C19—H19B | 108.1 |
N6—C9—H9A | 108.9 | C19—C20—C21 | 110.10 (18) |
C10—C9—H9A | 108.9 | C19—C20—H20A | 109.6 |
N6—C9—H9B | 108.9 | C21—C20—H20A | 109.6 |
C10—C9—H9B | 108.9 | C19—C20—H20B | 109.6 |
H9A—C9—H9B | 107.7 | C21—C20—H20B | 109.6 |
C15—C10—C11 | 120.70 (15) | H20A—C20—H20B | 108.2 |
C15—C10—C9 | 121.21 (15) | C20—C21—C22 | 109.71 (17) |
C11—C10—C9 | 118.08 (15) | C20—C21—H21A | 109.7 |
C12—C11—C10 | 119.11 (16) | C22—C21—H21A | 109.7 |
C12—C11—H11 | 120.4 | C20—C21—H21B | 109.7 |
C10—C11—H11 | 120.4 | C22—C21—H21B | 109.7 |
O1—C12—C11 | 124.41 (15) | H21A—C21—H21B | 108.2 |
O1—C12—C13 | 114.85 (15) | C18—C22—C21 | 108.40 (16) |
C11—C12—C13 | 120.74 (15) | C18—C22—H22A | 110.0 |
C14—C13—C12 | 119.31 (16) | C21—C22—H22A | 110.0 |
C14—C13—H13 | 120.3 | C18—C22—H22B | 110.0 |
C12—C13—H13 | 120.3 | C21—C22—H22B | 110.0 |
O2—C14—C13 | 124.00 (16) | H22A—C22—H22B | 108.4 |
O2—C14—C15 | 115.25 (14) |
Cg is the centroid of the C10–C15 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6···N7i | 0.88 | 2.38 | 3.155 (2) | 147 |
C17—H17A···O3ii | 0.98 | 2.44 | 3.216 (3) | 136 |
C8—H8···Cgi | 0.95 | 2.72 | 3.506 (2) | 142 |
C21—H21B···Cgiii | 0.99 | 2.93 | 3.904 (3) | 169 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, y, z−1; (iii) −x+2, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H23N5O3 |
Mr | 369.42 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 110 |
a, b, c (Å) | 8.6978 (3), 8.8318 (3), 12.1517 (4) |
α, β, γ (°) | 84.808 (3), 78.674 (3), 82.039 (3) |
V (Å3) | 904.53 (5) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.40 × 0.40 × 0.35 |
Data collection | |
Diffractometer | Agilent Xcalibur Sapphire2 diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Agilent, 2012). |
Tmin, Tmax | 0.963, 0.968 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6684, 3177, 2784 |
Rint | 0.010 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.116, 1.07 |
No. of reflections | 3177 |
No. of parameters | 246 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.45, −0.22 |
Computer programs: CrysAlis PRO (Agilent, 2012), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2011), publCIF (Westrip, 2010).
Cg is the centroid of the C10–C15 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6···N7i | 0.88 | 2.38 | 3.155 (2) | 147 |
C17—H17A···O3ii | 0.98 | 2.44 | 3.216 (3) | 136 |
C8—H8···Cgi | 0.95 | 2.72 | 3.506 (2) | 142 |
C21—H21B···Cgiii | 0.99 | 2.93 | 3.904 (3) | 169 |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) x, y, z−1; (iii) −x+2, −y+2, −z+1. |
Acknowledgements
This work was supported by Palacký University (grant No. PrF_2012_009). The authors thank Mr Tomáš Šilha for performing the CHN elemental analyses.
References
Agilent (2012). CrysAlis PRO. Agilent Technologies Ltd, Yarnton, Oxfordshire, England. Google Scholar
Brandenburg, K. (2011). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Soriano-Garcia, M., Avellaneda, C. R. & Aguirre-Hernandez, G. (2003). Anal. Sci. 19, 1343–1344. Web of Science PubMed CAS Google Scholar
Szüčová, L., Spíchal, L., Doležal, K., Zatloukal, M., Greplová, J., Galuszka, P., Kryštof, V., Voller, J., Popa, I., Massino, F. J., Jørgensen, J. E. & Strnad, M. (2009). Bioorg. Med. Chem. 17, 1938–1947. Web of Science PubMed Google Scholar
Taddei, D., Kilian, P., Slawin, A. M. Z. & Woollins, J. D. (2004). Org. Biomol. Chem. 2, 665–670. Web of Science CSD CrossRef PubMed CAS Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, 6-(3,5-dimethoxybenzylamino)-9-(tetrahydropyran-2-yl)-9H-purine (Fig. 1), is formed by the essentially planar purine moiety substituted by 3,5-dimethoxybenzylamine and tetrahydropyran-2-yl at the C6, and N9 position, respectively (for related structures, see: Soriano-Garcia et al., 2003; Taddei et al., 2004). The six-membered pyrimidine and five-membered imidazole rings of the purine moiety form the dihedral angle of 1.50 (6)° (Fig. 2), while the planes fitted through all the non-hydrogen atoms of purine and benzene rings form the dihedral angle of 63.87 (4)° (Fig. 3). The most deviated atoms from the planes created through the pyrimidine, imidazole, purine and benzene rings are C5 (0.006 (2) Å), C8 (-0.005 (2) Å), C5 (0.021 (2) Å), and C12 (0.011 (2) Å), respectively. The crystal structure is stabilized by the N6—H6···N7 hydrogen bonds (see Table 1 for parameters) and C—H···O, C—H···π and parallel slipped π–π interactions [centroid–centroid distance = 3.467 (1) Å; slippage 0.519 Å] (Fig. 4 and Fig. 5). The tetrahydropyranyl ring adopts a chair conformation. The Cremer-Pople puckering parameters (Cremer & Pople, 1975) are QT = 0.691 (2) Å, Θ2 = 89.4 (2)°, q2 = 0.691 (2)°, q3 = 0.007 (2)° and ϕ2 = 148.8 (2)°.