organic compounds
tert-Butyl 4-{5-[3-(trifluoromethoxy)phenyl]-1,2,4-oxadiazol-3-yl}piperazine-1-carboxylate
aDepartment of Studies and Research in Chemistry, Tumkur University, Tumkur, Karnataka 572 103, India, bDepartment of Physics, Governament First Grade College K.R. Pete, Karnataka 571 426, India, cDepartment of Studies and Research in Chemistry, U.C.S., Tumkur University, Tumkur, Karnataka 572 103, India, and dDepartment of Studies and Research in Physics, U.C.S., Tumkur University, Tumkur, Karnataka 572 103, India
*Correspondence e-mail: palaksha.bspm@gmail.com
In the title compound, C18H21F3N4O4, the piperazine ring adopts a chair conformation and the dihedral angle between the oxadiazole and benzene rings is 6.45 (14)°. The C atoms and their attached H atoms in the piperazine ring are disordered, with site-occupation factors of 0.576 (12) and 0.424 (12). In the crystal, molecules are linked through weak C—H⋯O interactions, generating an R22(12) motif. Further, secondary C—H⋯O intermolecular interactions link the molecules into C(6) chains along [100].
Related literature
For the synthesis and biological activity of 1,2,4-oxadiazoles, see: Chimirri et al. (1996); Nicolaides et al. (1998); Kemnitzer et al. (2009).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell APEX2 and SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536813010131/bt6899sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813010131/bt6899Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536813010131/bt6899Isup3.cml
To a solution of 1-N-carbidamide (2.14 mmol) in 5 ml N,N-dimethylformamide was added 3-trifluoromethoxy benzoic acid (2.36 mmol) and propylphosphonic anhydride (4.72 mmol). The reaction mixture was heated at 150°C for 12 h (reaction was monitored by TLC). The reaction mixture was poured to ice cold water. The solid obtained was filtered and washed with water. The crude product was purified by
using pet ether-ethyl acetate as the eluent.Colourless prisms were obtained from slow evaporation of the solution of the compound in a mixture of pet ether and ethyl acetate (1:2).
All H atoms were positioned geometrically, with C—H = 0.93 Å for aromatic H, C—H = 0.97 Å for methylene H and C —H = 0.96 Å for methyl H, and refined using a riding model with Uiso(H) = 1.5Ueq(C) for methyl H and Uiso(H) = 1.2Ueq(C) for all other H.
The C10, C11 C12 and C13 carbon atoms of a piperazine ring in the molecules were disordered over two sites and refined with site occupancy factors 0.576 (12):0.424 (12).
1,2,4-Oxadiazoles exhibit diverse biological activities (Chimirri et al., 1996). They have been described as bio-isosteres for
and Due to increased hydrolytic and metabolic stabilities of the oxadiazole ring, improved pharmacokinetic and in vivo performance are often observed, which makes these heterocycles an important structural moiety for the pharmaceutical industry (Nicolaides et al., 1998). As a consequence of these, oxadiazoles have often been the target of numerous drug discovery programs as anti-inflammatory agents, anti-tumor agents, potential anticancer agents, Histamine H3 receptor antagonists as potent inhibitors of MIF biological function, and bell-tryptase inhibitors, In addition to these, 1,2,4-oxadiazoles are widely used as hydrolysis resisting amide bioisosteres in the development of peptidomimetics (Kemnitzer et al.,2009). Also, oxadiazoles exhibit wide range of antibacterial, antifungal and activities against Gram-positive and Gram-negative bacteria. Keeping this in mind, the of the title compound was determined.In the
of the title compound, C18H21F3N4O4, the piperazine ring adopts chair conformation, and the molecule is almost planar with the dihedral angle between the oxadiazole and the benzene ring is 6.45 (14)o. In the structure, the molecules are linked through weak C10A—H10C···O4 interactions generating a R22(12) motif. Further, C17—H17A···O4 intermolecular interactions link the molecules into C(6) chains along [100].For the synthesis and biological activity of 1,2,4-oxadiazoles, see: Chimirri et al. (1996); Nicolaides et al. (1998); Kemnitzer et al. (2009).
Data collection: APEX2 (Bruker, 2009); cell
APEX2 and SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. Packing of molecules in the crystal structure along a axis. |
C18H21F3N4O4 | F(000) = 432 |
Mr = 414.39 | prism |
Triclinic, P1 | Dx = 1.366 Mg m−3 |
Hall symbol: -P 1 | Melting point: 435 K |
a = 5.773 (2) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 11.168 (5) Å | Cell parameters from 3543 reflections |
c = 15.991 (7) Å | θ = 1.8–25° |
α = 96.092 (16)° | µ = 0.12 mm−1 |
β = 100.316 (14)° | T = 300 K |
γ = 91.333 (14)° | Prism, colourless |
V = 1007.7 (8) Å3 | 0.28 × 0.24 × 0.18 mm |
Z = 2 |
Bruker SMART X2S diffractometer | 3521 independent reflections |
Radiation source: fine-focus sealed tube | 2233 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Detector resolution: 1.20 pixels mm-1 | θmax = 25.0°, θmin = 1.8° |
phi and ω scans | h = −6→6 |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | k = −13→13 |
Tmin = 0.968, Tmax = 0.980 | l = −17→18 |
7493 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.062 | H-atom parameters constrained |
wR(F2) = 0.207 | w = 1/[σ2(Fo2) + (0.1182P)2 + 0.0138P] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
3521 reflections | Δρmax = 0.40 e Å−3 |
303 parameters | Δρmin = −0.23 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 constraints | Extinction coefficient: 0.183 (18) |
Primary atom site location: structure-invariant direct methods |
C18H21F3N4O4 | γ = 91.333 (14)° |
Mr = 414.39 | V = 1007.7 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.773 (2) Å | Mo Kα radiation |
b = 11.168 (5) Å | µ = 0.12 mm−1 |
c = 15.991 (7) Å | T = 300 K |
α = 96.092 (16)° | 0.28 × 0.24 × 0.18 mm |
β = 100.316 (14)° |
Bruker SMART X2S diffractometer | 3521 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2233 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.980 | Rint = 0.040 |
7493 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | 0 restraints |
wR(F2) = 0.207 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.40 e Å−3 |
3521 reflections | Δρmin = −0.23 e Å−3 |
303 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
F1 | 0.1439 (5) | −0.1754 (2) | 0.02278 (16) | 0.1429 (9) | |
F2 | −0.1943 (5) | −0.1403 (2) | −0.03649 (15) | 0.1536 (11) | |
F3 | −0.1037 (5) | −0.31943 (19) | −0.01851 (15) | 0.1365 (9) | |
O3 | 1.2946 (3) | 0.41202 (15) | 0.72076 (12) | 0.0732 (6) | |
N1 | 0.3871 (4) | 0.16222 (17) | 0.37686 (14) | 0.0639 (6) | |
O1 | −0.1462 (4) | −0.20090 (16) | 0.09264 (14) | 0.0872 (7) | |
O4 | 1.0601 (3) | 0.56341 (15) | 0.68027 (12) | 0.0729 (6) | |
N4 | 0.9956 (4) | 0.37620 (18) | 0.61086 (15) | 0.0775 (8) | |
N3 | 0.7139 (4) | 0.20950 (18) | 0.49149 (15) | 0.0748 (7) | |
C8 | 0.3252 (4) | 0.0647 (2) | 0.32603 (17) | 0.0626 (7) | |
O2 | 0.4744 (3) | −0.02502 (15) | 0.33963 (13) | 0.0842 (7) | |
C17 | 1.5616 (5) | 0.5904 (3) | 0.7642 (2) | 0.0842 (9) | |
H17A | 1.6533 | 0.5603 | 0.7226 | 0.126* | |
H17B | 1.6630 | 0.6351 | 0.8120 | 0.126* | |
H17C | 1.4451 | 0.6421 | 0.7387 | 0.126* | |
C15 | 1.4403 (4) | 0.4856 (2) | 0.79455 (18) | 0.0675 (8) | |
C14 | 1.1144 (4) | 0.4601 (2) | 0.67156 (17) | 0.0598 (7) | |
C13B | 0.926 (4) | 0.1677 (18) | 0.5545 (17) | 0.120 (9) | 0.424 (12) |
H13A | 0.8738 | 0.1465 | 0.6056 | 0.144* | 0.424 (12) |
H13B | 0.9903 | 0.0971 | 0.5279 | 0.144* | 0.424 (12) |
C12B | 1.099 (2) | 0.2613 (8) | 0.5762 (10) | 0.086 (4) | 0.424 (12) |
H12A | 1.1640 | 0.2757 | 0.5261 | 0.103* | 0.424 (12) |
H12B | 1.2261 | 0.2381 | 0.6191 | 0.103* | 0.424 (12) |
C10B | 0.630 (2) | 0.3260 (9) | 0.5233 (12) | 0.088 (4) | 0.424 (12) |
H10A | 0.5704 | 0.3662 | 0.4734 | 0.105* | 0.424 (12) |
H10B | 0.4948 | 0.3079 | 0.5490 | 0.105* | 0.424 (12) |
C11B | 0.752 (2) | 0.3985 (9) | 0.5728 (7) | 0.058 (3) | 0.424 (12) |
H11A | 0.6698 | 0.4182 | 0.6199 | 0.070* | 0.424 (12) |
H11B | 0.7584 | 0.4709 | 0.5445 | 0.070* | 0.424 (12) |
C12A | 1.0048 (16) | 0.2456 (4) | 0.6218 (5) | 0.069 (2) | 0.576 (12) |
H12C | 0.8964 | 0.2242 | 0.6582 | 0.083* | 0.576 (12) |
H12D | 1.1626 | 0.2261 | 0.6476 | 0.083* | 0.576 (12) |
C10A | 0.7026 (16) | 0.3384 (6) | 0.4823 (4) | 0.064 (2) | 0.576 (12) |
H10C | 0.7741 | 0.3522 | 0.4335 | 0.076* | 0.576 (12) |
H10D | 0.5374 | 0.3557 | 0.4674 | 0.076* | 0.576 (12) |
C11A | 0.798 (3) | 0.4188 (9) | 0.5456 (10) | 0.118 (5) | 0.576 (12) |
H11C | 0.6745 | 0.4481 | 0.5754 | 0.142* | 0.576 (12) |
H11D | 0.8589 | 0.4866 | 0.5216 | 0.142* | 0.576 (12) |
C13A | 0.935 (2) | 0.1786 (10) | 0.5329 (10) | 0.079 (3) | 0.576 (12) |
H13C | 1.0519 | 0.1964 | 0.4990 | 0.095* | 0.576 (12) |
H13D | 0.9323 | 0.0925 | 0.5371 | 0.095* | 0.576 (12) |
C9 | 0.5908 (4) | 0.1308 (2) | 0.42731 (17) | 0.0650 (7) | |
C7 | 0.1175 (4) | 0.0417 (2) | 0.25840 (16) | 0.0602 (7) | |
C2 | 0.0872 (5) | −0.0670 (2) | 0.20452 (17) | 0.0643 (7) | |
H2 | 0.2013 | −0.1244 | 0.2102 | 0.077* | |
C3 | −0.1129 (5) | −0.0876 (2) | 0.14335 (17) | 0.0680 (7) | |
C1 | −0.0818 (7) | −0.2073 (3) | 0.0164 (2) | 0.0931 (10) | |
C16 | 1.2901 (5) | 0.5271 (3) | 0.8599 (2) | 0.0908 (10) | |
H16A | 1.1790 | 0.5829 | 0.8365 | 0.136* | |
H16B | 1.3893 | 0.5660 | 0.9106 | 0.136* | |
H16C | 1.2069 | 0.4588 | 0.8739 | 0.136* | |
C18 | 1.6170 (5) | 0.3967 (3) | 0.8286 (2) | 0.1016 (11) | |
H18A | 1.5353 | 0.3288 | 0.8440 | 0.152* | |
H18B | 1.7219 | 0.4349 | 0.8782 | 0.152* | |
H18C | 1.7059 | 0.3698 | 0.7854 | 0.152* | |
N2 | 0.6565 (4) | 0.02094 (19) | 0.40855 (17) | 0.0873 (8) | |
C6 | −0.0521 (5) | 0.1271 (2) | 0.24771 (19) | 0.0719 (8) | |
H6 | −0.0305 | 0.2007 | 0.2818 | 0.086* | |
C5 | −0.2519 (5) | 0.1028 (3) | 0.1868 (2) | 0.0873 (9) | |
H5 | −0.3673 | 0.1597 | 0.1813 | 0.105* | |
C4 | −0.2857 (5) | −0.0051 (3) | 0.13307 (19) | 0.0802 (9) | |
H4 | −0.4209 | −0.0208 | 0.0915 | 0.096* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.1346 (19) | 0.166 (2) | 0.1214 (19) | −0.0219 (17) | 0.0325 (16) | −0.0246 (16) |
F2 | 0.213 (3) | 0.157 (2) | 0.0844 (15) | 0.064 (2) | −0.0016 (16) | 0.0215 (14) |
F3 | 0.176 (2) | 0.0978 (15) | 0.1147 (18) | −0.0047 (14) | 0.0031 (15) | −0.0393 (12) |
O3 | 0.0603 (10) | 0.0590 (10) | 0.0896 (14) | 0.0103 (8) | −0.0093 (10) | −0.0032 (9) |
N1 | 0.0682 (13) | 0.0509 (11) | 0.0667 (14) | 0.0126 (9) | −0.0016 (11) | 0.0007 (9) |
O1 | 0.1116 (16) | 0.0655 (12) | 0.0754 (15) | −0.0164 (11) | 0.0025 (12) | −0.0052 (10) |
O4 | 0.0692 (11) | 0.0581 (11) | 0.0865 (14) | 0.0138 (9) | 0.0067 (10) | −0.0043 (9) |
N4 | 0.0780 (14) | 0.0522 (12) | 0.0861 (17) | 0.0204 (10) | −0.0215 (12) | −0.0078 (11) |
N3 | 0.0790 (14) | 0.0505 (12) | 0.0815 (16) | 0.0204 (10) | −0.0169 (12) | −0.0041 (10) |
C8 | 0.0711 (16) | 0.0492 (13) | 0.0654 (16) | 0.0117 (11) | 0.0056 (13) | 0.0056 (11) |
O2 | 0.0890 (13) | 0.0546 (10) | 0.0924 (15) | 0.0194 (9) | −0.0193 (11) | −0.0095 (9) |
C17 | 0.0629 (16) | 0.087 (2) | 0.101 (2) | −0.0115 (15) | 0.0223 (16) | −0.0084 (17) |
C15 | 0.0530 (13) | 0.0693 (16) | 0.0728 (18) | 0.0025 (12) | −0.0011 (13) | −0.0046 (13) |
C14 | 0.0553 (14) | 0.0519 (14) | 0.0706 (17) | 0.0082 (11) | 0.0102 (12) | 0.0006 (11) |
C13B | 0.091 (9) | 0.085 (9) | 0.16 (2) | 0.005 (6) | −0.064 (10) | 0.038 (9) |
C12B | 0.089 (6) | 0.061 (4) | 0.095 (8) | 0.033 (4) | −0.008 (6) | −0.013 (5) |
C10B | 0.074 (6) | 0.074 (6) | 0.104 (10) | 0.032 (5) | −0.013 (6) | 0.000 (7) |
C11B | 0.077 (5) | 0.030 (4) | 0.059 (5) | 0.024 (4) | −0.005 (4) | −0.007 (4) |
C12A | 0.089 (4) | 0.053 (3) | 0.056 (4) | 0.014 (3) | −0.011 (3) | 0.004 (3) |
C10A | 0.080 (5) | 0.053 (3) | 0.051 (4) | 0.023 (3) | −0.008 (3) | 0.000 (3) |
C11A | 0.108 (7) | 0.062 (4) | 0.160 (11) | −0.005 (4) | −0.056 (7) | 0.048 (6) |
C13A | 0.098 (6) | 0.045 (4) | 0.077 (5) | 0.037 (4) | −0.024 (4) | −0.014 (4) |
C9 | 0.0667 (15) | 0.0521 (13) | 0.0700 (17) | 0.0135 (11) | −0.0035 (13) | 0.0037 (11) |
C7 | 0.0646 (14) | 0.0509 (13) | 0.0630 (16) | 0.0045 (11) | 0.0064 (13) | 0.0047 (11) |
C2 | 0.0717 (16) | 0.0513 (13) | 0.0677 (17) | 0.0062 (11) | 0.0052 (14) | 0.0081 (11) |
C3 | 0.0798 (17) | 0.0557 (14) | 0.0625 (17) | −0.0042 (12) | 0.0012 (14) | 0.0009 (11) |
C1 | 0.105 (3) | 0.079 (2) | 0.080 (2) | 0.0066 (18) | −0.012 (2) | −0.0086 (17) |
C16 | 0.0748 (18) | 0.122 (3) | 0.076 (2) | −0.0063 (17) | 0.0193 (16) | 0.0046 (18) |
C18 | 0.0774 (19) | 0.094 (2) | 0.120 (3) | 0.0150 (16) | −0.0166 (19) | 0.007 (2) |
N2 | 0.0873 (15) | 0.0587 (13) | 0.0973 (19) | 0.0220 (11) | −0.0248 (14) | −0.0095 (12) |
C6 | 0.0728 (17) | 0.0633 (15) | 0.0734 (18) | 0.0102 (13) | 0.0005 (14) | −0.0005 (13) |
C5 | 0.0749 (18) | 0.0794 (19) | 0.100 (2) | 0.0201 (15) | −0.0017 (18) | 0.0023 (17) |
C4 | 0.0660 (16) | 0.086 (2) | 0.080 (2) | −0.0004 (15) | −0.0055 (15) | 0.0018 (15) |
F1—C1 | 1.326 (4) | C12B—H12B | 0.9700 |
F2—C1 | 1.287 (4) | C10B—C11B | 1.192 (16) |
F3—C1 | 1.309 (3) | C10B—H10A | 0.9700 |
O3—C14 | 1.346 (3) | C10B—H10B | 0.9700 |
O3—C15 | 1.477 (3) | C11B—H11A | 0.9700 |
N1—C8 | 1.290 (3) | C11B—H11B | 0.9700 |
N1—C9 | 1.377 (3) | C12A—C13A | 1.517 (15) |
O1—C1 | 1.333 (4) | C12A—H12C | 0.9700 |
O1—C3 | 1.418 (3) | C12A—H12D | 0.9700 |
O4—C14 | 1.203 (3) | C10A—C11A | 1.311 (14) |
N4—C14 | 1.352 (3) | C10A—H10C | 0.9700 |
N4—C11B | 1.466 (13) | C10A—H10D | 0.9700 |
N4—C12A | 1.488 (5) | C11A—H11C | 0.9700 |
N4—C12B | 1.522 (8) | C11A—H11D | 0.9700 |
N4—C11A | 1.525 (12) | C13A—H13C | 0.9700 |
N3—C9 | 1.360 (3) | C13A—H13D | 0.9700 |
N3—C13A | 1.396 (13) | C9—N2 | 1.313 (3) |
N3—C10A | 1.464 (6) | C7—C6 | 1.384 (3) |
N3—C10B | 1.471 (10) | C7—C2 | 1.400 (3) |
N3—C13B | 1.55 (2) | C2—C3 | 1.371 (4) |
C8—O2 | 1.346 (3) | C2—H2 | 0.9300 |
C8—C7 | 1.461 (4) | C3—C4 | 1.374 (4) |
O2—N2 | 1.423 (3) | C16—H16A | 0.9600 |
C17—C15 | 1.517 (4) | C16—H16B | 0.9600 |
C17—H17A | 0.9600 | C16—H16C | 0.9600 |
C17—H17B | 0.9600 | C18—H18A | 0.9600 |
C17—H17C | 0.9600 | C18—H18B | 0.9600 |
C15—C18 | 1.513 (4) | C18—H18C | 0.9600 |
C15—C16 | 1.516 (4) | C6—C5 | 1.371 (4) |
C13B—C12B | 1.40 (2) | C6—H6 | 0.9300 |
C13B—H13A | 0.9700 | C5—C4 | 1.392 (4) |
C13B—H13B | 0.9700 | C5—H5 | 0.9300 |
C12B—H12A | 0.9700 | C4—H4 | 0.9300 |
C14—O3—C15 | 120.64 (19) | H11A—C11B—H11B | 106.6 |
C8—N1—C9 | 102.38 (19) | N4—C12A—C13A | 106.2 (7) |
C1—O1—C3 | 117.1 (2) | N4—C12A—H12C | 110.5 |
C14—N4—C11B | 118.3 (4) | C13A—C12A—H12C | 110.5 |
C14—N4—C12A | 121.0 (3) | N4—C12A—H12D | 110.5 |
C11B—N4—C12A | 107.1 (5) | C13A—C12A—H12D | 110.5 |
C14—N4—C12B | 124.7 (4) | H12C—C12A—H12D | 108.7 |
C11B—N4—C12B | 116.9 (5) | C11A—C10A—N3 | 120.6 (6) |
C12A—N4—C12B | 39.3 (4) | C11A—C10A—H10C | 107.2 |
C14—N4—C11A | 117.5 (5) | N3—C10A—H10C | 107.2 |
C11B—N4—C11A | 23.3 (7) | C11A—C10A—H10D | 107.2 |
C12A—N4—C11A | 119.0 (5) | N3—C10A—H10D | 107.2 |
C12B—N4—C11A | 112.1 (6) | H10C—C10A—H10D | 106.8 |
C9—N3—C13A | 119.0 (4) | C10A—C11A—N4 | 116.1 (7) |
C9—N3—C10A | 117.9 (3) | C10A—C11A—H11C | 108.3 |
C13A—N3—C10A | 112.6 (7) | N4—C11A—H11C | 108.3 |
C9—N3—C10B | 124.8 (5) | C10A—C11A—H11D | 108.3 |
C13A—N3—C10B | 116.2 (6) | N4—C11A—H11D | 108.3 |
C10A—N3—C10B | 34.1 (5) | H11C—C11A—H11D | 107.4 |
C9—N3—C13B | 120.7 (8) | N3—C13A—C12A | 112.4 (7) |
C13A—N3—C13B | 13.8 (16) | N3—C13A—H13C | 109.1 |
C10A—N3—C13B | 117.7 (8) | C12A—C13A—H13C | 109.1 |
C10B—N3—C13B | 112.4 (10) | N3—C13A—H13D | 109.1 |
N1—C8—O2 | 113.7 (2) | C12A—C13A—H13D | 109.1 |
N1—C8—C7 | 128.1 (2) | H13C—C13A—H13D | 107.9 |
O2—C8—C7 | 118.2 (2) | N2—C9—N3 | 123.0 (2) |
C8—O2—N2 | 106.38 (18) | N2—C9—N1 | 115.3 (2) |
C15—C17—H17A | 109.5 | N3—C9—N1 | 121.6 (2) |
C15—C17—H17B | 109.5 | C6—C7—C2 | 119.5 (2) |
H17A—C17—H17B | 109.5 | C6—C7—C8 | 120.1 (2) |
C15—C17—H17C | 109.5 | C2—C7—C8 | 120.4 (2) |
H17A—C17—H17C | 109.5 | C3—C2—C7 | 119.2 (2) |
H17B—C17—H17C | 109.5 | C3—C2—H2 | 120.4 |
O3—C15—C18 | 102.0 (2) | C7—C2—H2 | 120.4 |
O3—C15—C16 | 110.1 (2) | C2—C3—C4 | 122.2 (2) |
C18—C15—C16 | 111.2 (3) | C2—C3—O1 | 118.2 (2) |
O3—C15—C17 | 109.9 (2) | C4—C3—O1 | 119.5 (2) |
C18—C15—C17 | 111.0 (2) | F2—C1—F3 | 109.1 (3) |
C16—C15—C17 | 112.2 (2) | F2—C1—F1 | 105.3 (4) |
O4—C14—O3 | 125.4 (2) | F3—C1—F1 | 105.4 (3) |
O4—C14—N4 | 123.3 (2) | F2—C1—O1 | 115.3 (3) |
O3—C14—N4 | 111.3 (2) | F3—C1—O1 | 109.3 (3) |
C12B—C13B—N3 | 109.2 (16) | F1—C1—O1 | 111.8 (3) |
C12B—C13B—H13A | 109.8 | C15—C16—H16A | 109.5 |
N3—C13B—H13A | 109.8 | C15—C16—H16B | 109.5 |
C12B—C13B—H13B | 109.8 | H16A—C16—H16B | 109.5 |
N3—C13B—H13B | 109.8 | C15—C16—H16C | 109.5 |
H13A—C13B—H13B | 108.3 | H16A—C16—H16C | 109.5 |
C13B—C12B—N4 | 110.6 (13) | H16B—C16—H16C | 109.5 |
C13B—C12B—H12A | 109.5 | C15—C18—H18A | 109.5 |
N4—C12B—H12A | 109.5 | C15—C18—H18B | 109.5 |
C13B—C12B—H12B | 109.5 | H18A—C18—H18B | 109.5 |
N4—C12B—H12B | 109.5 | C15—C18—H18C | 109.5 |
H12A—C12B—H12B | 108.1 | H18A—C18—H18C | 109.5 |
C11B—C10B—N3 | 122.9 (9) | H18B—C18—H18C | 109.5 |
C11B—C10B—H10A | 106.6 | C9—N2—O2 | 102.18 (19) |
N3—C10B—H10A | 106.6 | C5—C6—C7 | 119.9 (2) |
C11B—C10B—H10B | 106.6 | C5—C6—H6 | 120.1 |
N3—C10B—H10B | 106.6 | C7—C6—H6 | 120.1 |
H10A—C10B—H10B | 106.6 | C6—C5—C4 | 121.4 (3) |
C10B—C11B—N4 | 122.7 (7) | C6—C5—H5 | 119.3 |
C10B—C11B—H11A | 106.7 | C4—C5—H5 | 119.3 |
N4—C11B—H11A | 106.7 | C3—C4—C5 | 117.9 (3) |
C10B—C11B—H11B | 106.7 | C3—C4—H4 | 121.0 |
N4—C11B—H11B | 106.7 | C5—C4—H4 | 121.0 |
C9—N1—C8—O2 | −0.7 (3) | N3—C10A—C11A—N4 | 23.9 (15) |
C9—N1—C8—C7 | 178.7 (3) | C14—N4—C11A—C10A | 173.0 (8) |
N1—C8—O2—N2 | 0.1 (3) | C11B—N4—C11A—C10A | −88.8 (19) |
C7—C8—O2—N2 | −179.4 (2) | C12A—N4—C11A—C10A | −24.8 (13) |
C14—O3—C15—C18 | −179.3 (2) | C12B—N4—C11A—C10A | 18.3 (13) |
C14—O3—C15—C16 | 62.6 (3) | C9—N3—C13A—C12A | −156.9 (8) |
C14—O3—C15—C17 | −61.5 (3) | C10A—N3—C13A—C12A | 59.0 (15) |
C15—O3—C14—O4 | 2.3 (4) | C10B—N3—C13A—C12A | 21.6 (19) |
C15—O3—C14—N4 | −176.4 (2) | C13B—N3—C13A—C12A | −56 (4) |
C11B—N4—C14—O4 | −20.6 (7) | N4—C12A—C13A—N3 | −56.6 (15) |
C12A—N4—C14—O4 | −156.0 (6) | C13A—N3—C9—N2 | 8.0 (10) |
C12B—N4—C14—O4 | 157.0 (9) | C10A—N3—C9—N2 | 150.3 (5) |
C11A—N4—C14—O4 | 5.9 (8) | C10B—N3—C9—N2 | −170.3 (9) |
C11B—N4—C14—O3 | 158.2 (6) | C13B—N3—C9—N2 | −7.8 (12) |
C12A—N4—C14—O3 | 22.7 (6) | C13A—N3—C9—N1 | −171.5 (9) |
C12B—N4—C14—O3 | −24.3 (10) | C10A—N3—C9—N1 | −29.2 (6) |
C11A—N4—C14—O3 | −175.4 (7) | C10B—N3—C9—N1 | 10.2 (10) |
C9—N3—C13B—C12B | 144.2 (13) | C13B—N3—C9—N1 | 172.6 (12) |
C13A—N3—C13B—C12B | 58 (4) | C8—N1—C9—N2 | 1.2 (3) |
C10A—N3—C13B—C12B | −14 (2) | C8—N1—C9—N3 | −179.2 (3) |
C10B—N3—C13B—C12B | −51 (2) | N1—C8—C7—C6 | −5.7 (4) |
N3—C13B—C12B—N4 | 55 (2) | O2—C8—C7—C6 | 173.7 (2) |
C14—N4—C12B—C13B | 147.2 (14) | N1—C8—C7—C2 | 174.9 (3) |
C11B—N4—C12B—C13B | −35.2 (19) | O2—C8—C7—C2 | −5.7 (4) |
C12A—N4—C12B—C13B | 49.1 (16) | C6—C7—C2—C3 | −1.4 (4) |
C11A—N4—C12B—C13B | −60.3 (18) | C8—C7—C2—C3 | 178.0 (2) |
C9—N3—C10B—C11B | −171.3 (12) | C7—C2—C3—C4 | 0.0 (4) |
C13A—N3—C10B—C11B | 10 (2) | C7—C2—C3—O1 | −176.6 (2) |
C10A—N3—C10B—C11B | −81.8 (16) | C1—O1—C3—C2 | −96.5 (3) |
C13B—N3—C10B—C11B | 25 (2) | C1—O1—C3—C4 | 86.9 (3) |
N3—C10B—C11B—N4 | −4 (2) | C3—O1—C1—F2 | −62.4 (4) |
C14—N4—C11B—C10B | −174.7 (12) | C3—O1—C1—F3 | 174.2 (2) |
C12A—N4—C11B—C10B | −33.7 (15) | C3—O1—C1—F1 | 57.9 (4) |
C12B—N4—C11B—C10B | 7.5 (18) | N3—C9—N2—O2 | 179.3 (3) |
C11A—N4—C11B—C10B | 91 (2) | N1—C9—N2—O2 | −1.1 (3) |
C14—N4—C12A—C13A | −159.4 (7) | C8—O2—N2—C9 | 0.6 (3) |
C11B—N4—C12A—C13A | 60.8 (9) | C2—C7—C6—C5 | 2.4 (4) |
C12B—N4—C12A—C13A | −51.0 (9) | C8—C7—C6—C5 | −177.0 (3) |
C11A—N4—C12A—C13A | 38.9 (11) | C7—C6—C5—C4 | −2.0 (5) |
C9—N3—C10A—C11A | 173.1 (9) | C2—C3—C4—C5 | 0.5 (4) |
C13A—N3—C10A—C11A | −42.4 (13) | O1—C3—C4—C5 | 177.0 (3) |
C10B—N3—C10A—C11A | 61.3 (11) | C6—C5—C4—C3 | 0.6 (5) |
C13B—N3—C10A—C11A | −28.1 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
C17—H17A···O4i | 0.96 | 2.56 | 3.393 (3) | 145 |
C10A—H10C···O4ii | 0.97 | 2.46 | 3.413 (10) | 167 |
Symmetry codes: (i) x+1, y, z; (ii) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C18H21F3N4O4 |
Mr | 414.39 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 300 |
a, b, c (Å) | 5.773 (2), 11.168 (5), 15.991 (7) |
α, β, γ (°) | 96.092 (16), 100.316 (14), 91.333 (14) |
V (Å3) | 1007.7 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.28 × 0.24 × 0.18 |
Data collection | |
Diffractometer | Bruker SMART X2S |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.968, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7493, 3521, 2233 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.207, 1.10 |
No. of reflections | 3521 |
No. of parameters | 303 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.40, −0.23 |
Computer programs: APEX2 (Bruker, 2009), APEX2 and SAINT-Plus (Bruker, 2009), SAINT-Plus and XPREP (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C17—H17A···O4i | 0.96 | 2.56 | 3.393 (3) | 145.4 |
C10A—H10C···O4ii | 0.97 | 2.46 | 3.413 (10) | 166.7 |
Symmetry codes: (i) x+1, y, z; (ii) −x+2, −y+1, −z+1. |
Acknowledgements
The authors thank Dr S. C. Sharma, Vice Chancellor, Tumkur University, for his constant encouragement and Professor T. N. Guru Row and Vijith Kumar, Solid State and Structural Chemistry Unit, Indian Institute of Science, Bangalore, for their help and valuable suggestions. BSPM thanks Dr H. C. Devarajegowda, Department of Physics, Yuvarajas College (constituent), University of Mysore, for his guidance.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
1,2,4-Oxadiazoles exhibit diverse biological activities (Chimirri et al., 1996). They have been described as bio-isosteres for amides and esters. Due to increased hydrolytic and metabolic stabilities of the oxadiazole ring, improved pharmacokinetic and in vivo performance are often observed, which makes these heterocycles an important structural moiety for the pharmaceutical industry (Nicolaides et al., 1998). As a consequence of these, oxadiazoles have often been the target of numerous drug discovery programs as anti-inflammatory agents, anti-tumor agents, potential anticancer agents, Histamine H3 receptor antagonists as potent inhibitors of MIF biological function, and bell-tryptase inhibitors, In addition to these, 1,2,4-oxadiazoles are widely used as hydrolysis resisting amide bioisosteres in the development of peptidomimetics (Kemnitzer et al.,2009). Also, oxadiazoles exhibit wide range of antibacterial, antifungal and activities against Gram-positive and Gram-negative bacteria. Keeping this in mind, the crystal structure of the title compound was determined.
In the crystal structure of the title compound, C18H21F3N4O4, the piperazine ring adopts chair conformation, and the molecule is almost planar with the dihedral angle between the oxadiazole and the benzene ring is 6.45 (14)o. In the structure, the molecules are linked through weak C10A—H10C···O4 interactions generating a R22(12) motif. Further, C17—H17A···O4 intermolecular interactions link the molecules into C(6) chains along [100].