organic compounds
[(2S,3aR,6aR)-5-Oxohexahydrofuro[3,2-b]furan-2-yl]methyl acetate
aDepartamento Quimica Organica, Facultade de Quimica, Universidade de Vigo, E-36310 Vigo, Spain, and bDepartamento Quimica Organica, Facultade de Farmacia, Universidade de Santiago de Compostela, 15782 Santiago de Compostela, Spain
*Correspondence e-mail: mariacmatos@gmail.com
The title compound, C9H12O5, is a bicyclic lactone, presenting a 2,6-dioxabicyclo[3.3.0]octan-3-one skeleton, which was obtained through an intramolecular lactonization. The bicyclic lactone presents a cis ring-junction and a 1,5-trans-substituted tetrahydrofuran. Both five-membered rings are in twisted envelope conformations with one of the fused C atoms as the flap. The dihedral angle between the mean planes of the bicyclic lactone residue, defined by the dihydrofuran-2(3H)-one and the tetrahydrofuran rings, is 69.5 (2)°. The atoms of the ester chain are coplanar [maximum deviation = 0.013 (2) Å]. The was not determined.
Related literature
For the et al. (2006); Banda & Chakravarthy (2006); Paddon-Jones et al. (2001). For the biological activity of target compounds, see: Hayes et al. (2003). For the synthesis of chiral tetrahydrofurans using L-malic acid, see: Álvarez et al. (2010). For pseudorotation parameters, see: Rao et al. (1981).
applications and structures of related 2,6-dioxabicyclo[3.3.0]octan-3-ones, see: AgrawalExperimental
Crystal data
|
Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536813010313/go2086sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813010313/go2086Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536813010313/go2086Isup3.cml
To a solution of (1R, 5R,7S)-7-hydroxymethyl-2,6-dioxabicyclo[3.3.0]octan-3-one (0.158 mmol) in pyridine (226 mL) was added Ac2O (149 mL) and the mixture was stirred at r.t. for 2 h. MeOH (3 mL) as added and the stirring continued for 20 min. The solvent was evaporated and EtOAc (5 mL) was added. The organic layer was washed with aq Cu2SO4 (3 x 5 mL), dried and the solvent was removed by rotary evaporation affording the title compound. It was then recrystallized using EtOAc. [mp: 87.1 – 89.9 °C; IR (NaCl, neat): 2917, 2849, 1771, 1740, 1462, 1370 cm-1; 1H-NMR (CDCl3): δ: 5.14 (t, 1H, J=3.7 Hz), 4.86 (s, 1H), 4.40 (d, 1H, J=5.5 Hz), 4.27 (d, 1H, J=11.9 Hz), 4.06 (dd, 1H, J=6.0 Hz, J=11.8 Hz), 2.76 (m, 2H), 2.44 (dd, 2H, J=5.3 Hz, J=13.9 Hz), 2.11 (s, 3H); 13C-NMR (CDCl3): δ: 175.53 (C=O), 170.85 (C=O), 84.34 (CH), 78.56 (CH), 76.41 (CH), 65.28 (CH2), 36.62 (CH2), 34.99 (CH2), 20.85 (CH3); HRMS: calcd for C9H12NaO5: 223.0577; found: 223.0575].
In all compounds H atoms were treated as riding atoms with C—H(primary), 0.97Å, C—H(secondary), 0.98Å with Uiso = 1.2Ueq(C)and C—H(methyl), 0.96Å. The positions of the methyl hydrogens was checked on a difference map. Since only C,H and O atoms were present in the molecule the quoted
is meaningless and hence the could not be determined.The 2,6-dioxabicyclo[3.3.0]octan-3-one skeleton is present in a number of natural products possessing diverse biological activities (Agrawal et al., 2006; Banda et al., 2006; Paddon-Jones et al., 2001). We have described a new methodology for the synthesis of chiral tetrahydrofurans using L-malic acid (Álvarez et al., 2010) as starting material. Using this strategy, a formal synthesis of (7S)-Hagen's gland τ(M), (Rao et al., 1981), for the 5-membered ring containing O2 are P = 334.4 (4)°, τ(M) = 24.3 (2)°, for reference bond C5–C4, the closest pucker descriptor for this is an Envelope on C(5). The pseudorotation parameters P and τ(M) for the 5-membered ring containing O6 are P = 345.0 (4)°, τ(M) = 26.1 (2)°, for the reference bond C1–C8, the closest pucker descriptor for this is an Envelope on C1. The dihedral angle between the main planes of the bicyclic lactone residue is 69.52°. The dihedral angle between the tetrahydrofuran plane and the plane of the ester residue (defined as the C1'-O2'-C3'-C4' atoms) is 55.94°. The C1'-O2'-C3'-C4' atoms of the lateral chain are co-planar.
was achieved by an intramolecular lactonization protocol. These bicyclic can be considered as potential bio-control agents for fruit-fly populations in different countries (Hayes et al., 2003). Analyzing the crystallographic data, it is observed that both five-membered rings are in twisted envelope conformations Fig.1. The pseudorotation parameters P andFor the
applications and structures of related 2,6-dioxabicyclo[3.3.0]octan-3-ones, see: Agrawal et al. (2006); Banda & Chakravarthy (2006); Paddon-Jones et al. (2001). For the biological activity of target compounds, see: Hayes et al. (2003). For the synthesis of chiral tetrahydrofurans using L-malic acid, see: Álvarez et al. (2010). For pseudorotation parameters, see: Rao et al. (1981).Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound with the atom-numbering scheme. Displacement ellipsoids are drawn at the 30% probability level. |
C9H12O5 | Dx = 1.392 Mg m−3 |
Mr = 200.19 | Melting point: 360.15(4) K |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.015 (5) Å | Cell parameters from 1040 reflections |
b = 4.647 (3) Å | θ = 2.4–24.1° |
c = 10.904 (5) Å | µ = 0.12 mm−1 |
β = 109.755 (7)° | T = 293 K |
V = 477.6 (4) Å3 | Needle, colourless |
Z = 2 | 0.49 × 0.11 × 0.10 mm |
F(000) = 212 |
Bruker APEXII CCD diffractometer | 1530 independent reflections |
Radiation source: fine-focus sealed tube | 1313 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.028 |
φ and ω scans | θmax = 25.1°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = −11→11 |
Tmin = 0.602, Tmax = 0.745 | k = −5→5 |
2551 measured reflections | l = −13→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0377P)2 + 0.1292P] where P = (Fo2 + 2Fc2)/3 |
1530 reflections | (Δ/σ)max < 0.001 |
128 parameters | Δρmax = 0.14 e Å−3 |
1 restraint | Δρmin = −0.16 e Å−3 |
C9H12O5 | V = 477.6 (4) Å3 |
Mr = 200.19 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.015 (5) Å | µ = 0.12 mm−1 |
b = 4.647 (3) Å | T = 293 K |
c = 10.904 (5) Å | 0.49 × 0.11 × 0.10 mm |
β = 109.755 (7)° |
Bruker APEXII CCD diffractometer | 1530 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 1313 reflections with I > 2σ(I) |
Tmin = 0.602, Tmax = 0.745 | Rint = 0.028 |
2551 measured reflections |
R[F2 > 2σ(F2)] = 0.044 | 1 restraint |
wR(F2) = 0.097 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.14 e Å−3 |
1530 reflections | Δρmin = −0.16 e Å−3 |
128 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.3092 (3) | 0.6053 (7) | 0.9619 (3) | 0.0455 (7) | |
H1 | 0.3648 | 0.4273 | 0.9825 | 0.055* | |
O2 | 0.38327 (19) | 0.8441 (5) | 1.04241 (19) | 0.0546 (6) | |
C3 | 0.3280 (3) | 0.9021 (7) | 1.1363 (3) | 0.0518 (8) | |
O3 | 0.3786 (3) | 1.0867 (6) | 1.2155 (2) | 0.0788 (7) | |
C4 | 0.2033 (3) | 0.7134 (8) | 1.1221 (2) | 0.0522 (8) | |
H4A | 0.1233 | 0.8252 | 1.1265 | 0.063* | |
H4B | 0.2263 | 0.5674 | 1.1896 | 0.063* | |
O6 | 0.07106 (19) | 0.7479 (6) | 0.89421 (18) | 0.0656 (7) | |
C5 | 0.1713 (3) | 0.5796 (7) | 0.9901 (3) | 0.0459 (7) | |
H5 | 0.1407 | 0.3790 | 0.9887 | 0.055* | |
C7 | 0.1203 (3) | 0.8206 (7) | 0.7894 (3) | 0.0452 (7) | |
H7 | 0.1309 | 1.0299 | 0.7865 | 0.054* | |
C8 | 0.2656 (3) | 0.6782 (8) | 0.8200 (3) | 0.0530 (8) | |
H8A | 0.2589 | 0.5060 | 0.7679 | 0.064* | |
H8B | 0.3329 | 0.8095 | 0.8034 | 0.064* | |
C1' | 0.0167 (3) | 0.7196 (8) | 0.6629 (3) | 0.0487 (7) | |
H1A | 0.0550 | 0.7489 | 0.5932 | 0.058* | |
H1B | −0.0025 | 0.5161 | 0.6677 | 0.058* | |
O2' | −0.1124 (2) | 0.8846 (5) | 0.63829 (18) | 0.0533 (5) | |
C3' | −0.2165 (3) | 0.8315 (7) | 0.5261 (3) | 0.0504 (7) | |
O3' | −0.2036 (3) | 0.6670 (6) | 0.4477 (2) | 0.0807 (8) | |
C4' | −0.3452 (3) | 1.0036 (8) | 0.5127 (3) | 0.0659 (10) | |
H4E | −0.3893 | 0.9331 | 0.5725 | 0.099* | |
H4D | −0.4104 | 0.9876 | 0.4252 | 0.099* | |
H4C | −0.3192 | 1.2017 | 0.5318 | 0.099* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0348 (13) | 0.0492 (18) | 0.0516 (16) | 0.0035 (14) | 0.0136 (12) | 0.0035 (14) |
O2 | 0.0410 (10) | 0.0622 (14) | 0.0599 (12) | −0.0120 (11) | 0.0162 (9) | −0.0041 (11) |
C3 | 0.0467 (17) | 0.057 (2) | 0.0405 (16) | 0.0046 (16) | 0.0004 (13) | 0.0065 (15) |
O3 | 0.0824 (16) | 0.0760 (18) | 0.0616 (14) | −0.0014 (15) | 0.0029 (12) | −0.0152 (14) |
C4 | 0.0471 (16) | 0.067 (2) | 0.0430 (15) | 0.0067 (15) | 0.0164 (12) | 0.0106 (14) |
O6 | 0.0410 (11) | 0.116 (2) | 0.0426 (11) | 0.0232 (12) | 0.0172 (9) | 0.0155 (12) |
C5 | 0.0432 (15) | 0.0489 (17) | 0.0472 (15) | −0.0005 (14) | 0.0173 (12) | 0.0039 (14) |
C7 | 0.0463 (15) | 0.0496 (19) | 0.0414 (14) | −0.0019 (14) | 0.0173 (12) | −0.0020 (14) |
C8 | 0.0455 (16) | 0.067 (2) | 0.0514 (17) | 0.0022 (15) | 0.0227 (13) | −0.0015 (15) |
C1' | 0.0545 (17) | 0.0462 (16) | 0.0460 (15) | 0.0030 (15) | 0.0179 (13) | −0.0009 (14) |
O2' | 0.0481 (11) | 0.0631 (14) | 0.0418 (11) | 0.0103 (11) | 0.0062 (9) | −0.0075 (10) |
C3' | 0.0558 (17) | 0.0529 (19) | 0.0402 (16) | −0.0051 (15) | 0.0131 (14) | 0.0017 (15) |
O3' | 0.0845 (17) | 0.088 (2) | 0.0559 (13) | 0.0072 (14) | 0.0055 (12) | −0.0251 (15) |
C4' | 0.0491 (18) | 0.084 (3) | 0.054 (2) | 0.0063 (16) | 0.0039 (15) | 0.0061 (17) |
C1—O2 | 1.453 (3) | C7—C8 | 1.530 (4) |
C1—C8 | 1.498 (4) | C7—H7 | 0.9800 |
C1—C5 | 1.518 (4) | C8—H8A | 0.9700 |
C1—H1 | 0.9800 | C8—H8B | 0.9700 |
O2—C3 | 1.345 (4) | C1'—O2' | 1.448 (3) |
C3—O3 | 1.201 (4) | C1'—H1A | 0.9700 |
C3—C4 | 1.490 (4) | C1'—H1B | 0.9700 |
C4—C5 | 1.500 (4) | O2'—C3' | 1.335 (3) |
C4—H4A | 0.9700 | C3'—O3' | 1.186 (4) |
C4—H4B | 0.9700 | C3'—C4' | 1.481 (4) |
O6—C5 | 1.415 (3) | C4'—H4E | 0.9600 |
O6—C7 | 1.430 (3) | C4'—H4D | 0.9600 |
C5—H5 | 0.9800 | C4'—H4C | 0.9600 |
C7—C1' | 1.494 (4) | ||
O2—C1—C8 | 111.3 (2) | O6—C7—H7 | 109.3 |
O2—C1—C5 | 104.6 (2) | C1'—C7—H7 | 109.3 |
C8—C1—C5 | 105.0 (2) | C8—C7—H7 | 109.3 |
O2—C1—H1 | 111.8 | C1—C8—C7 | 104.3 (2) |
C8—C1—H1 | 111.8 | C1—C8—H8A | 110.9 |
C5—C1—H1 | 111.8 | C7—C8—H8A | 110.9 |
C3—O2—C1 | 110.8 (2) | C1—C8—H8B | 110.9 |
O3—C3—O2 | 120.5 (3) | C7—C8—H8B | 110.9 |
O3—C3—C4 | 129.1 (3) | H8A—C8—H8B | 108.9 |
O2—C3—C4 | 110.4 (3) | O2'—C1'—C7 | 107.6 (2) |
C3—C4—C5 | 104.1 (2) | O2'—C1'—H1A | 110.2 |
C3—C4—H4A | 110.9 | C7—C1'—H1A | 110.2 |
C5—C4—H4A | 110.9 | O2'—C1'—H1B | 110.2 |
C3—C4—H4B | 110.9 | C7—C1'—H1B | 110.2 |
C5—C4—H4B | 110.9 | H1A—C1'—H1B | 108.5 |
H4A—C4—H4B | 109.0 | C3'—O2'—C1' | 116.4 (2) |
C5—O6—C7 | 111.7 (2) | O3'—C3'—O2' | 122.5 (3) |
O6—C5—C4 | 110.4 (3) | O3'—C3'—C4' | 125.4 (3) |
O6—C5—C1 | 105.9 (2) | O2'—C3'—C4' | 112.0 (3) |
C4—C5—C1 | 104.3 (2) | C3'—C4'—H4E | 109.5 |
O6—C5—H5 | 111.9 | C3'—C4'—H4D | 109.5 |
C4—C5—H5 | 111.9 | H4E—C4'—H4D | 109.5 |
C1—C5—H5 | 111.9 | C3'—C4'—H4C | 109.5 |
O6—C7—C1' | 110.1 (2) | H4E—C4'—H4C | 109.5 |
O6—C7—C8 | 106.5 (2) | H4D—C4'—H4C | 109.5 |
C1'—C7—C8 | 112.2 (2) | ||
C8—C1—O2—C3 | 130.1 (2) | C8—C1—C5—C4 | −141.0 (3) |
C5—C1—O2—C3 | 17.2 (3) | C5—O6—C7—C1' | 123.3 (3) |
C1—O2—C3—O3 | 177.4 (3) | C5—O6—C7—C8 | 1.4 (4) |
C1—O2—C3—C4 | −3.3 (3) | O2—C1—C8—C7 | −87.8 (3) |
O3—C3—C4—C5 | 167.1 (3) | C5—C1—C8—C7 | 24.8 (3) |
O2—C3—C4—C5 | −12.1 (3) | O6—C7—C8—C1 | −16.7 (3) |
C7—O6—C5—C4 | 126.7 (3) | C1'—C7—C8—C1 | −137.3 (3) |
C7—O6—C5—C1 | 14.4 (3) | O6—C7—C1'—O2' | 66.4 (3) |
C3—C4—C5—O6 | −91.7 (3) | C8—C7—C1'—O2' | −175.2 (2) |
C3—C4—C5—C1 | 21.6 (3) | C7—C1'—O2'—C3' | 177.6 (2) |
O2—C1—C5—O6 | 92.8 (3) | C1'—O2'—C3'—O3' | −2.9 (4) |
C8—C1—C5—O6 | −24.5 (3) | C1'—O2'—C3'—C4' | 178.0 (3) |
O2—C1—C5—C4 | −23.7 (3) |
Experimental details
Crystal data | |
Chemical formula | C9H12O5 |
Mr | 200.19 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 10.015 (5), 4.647 (3), 10.904 (5) |
β (°) | 109.755 (7) |
V (Å3) | 477.6 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.49 × 0.11 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008) |
Tmin, Tmax | 0.602, 0.745 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 2551, 1530, 1313 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.596 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.097, 1.07 |
No. of reflections | 1530 |
No. of parameters | 128 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.16 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), PLATON (Spek, 2009).
Acknowledgements
This work was supported financially by the Xunta de Galicia (No. EXPTE. CN 2012/184). The work of the MS and X-ray divisions of the research support service of the University of Vigo (CACTI) is also gratefully acknowledged. MG thanks the University of Vigo for a PhD fellowship.
References
Agrawal, D., Sriramurthy, V. & Yadav, V. K. (2006). Tetrahedron Lett. 47, 7615–7618. Web of Science CrossRef CAS Google Scholar
Álvarez, C., Pérez, M., Zúñiga, A., Gómez, G. & Fall, Y. (2010). Synthesis, 22, 3883–3890. Google Scholar
Banda, G. & Chakravarthy, I. E. (2006). Tetrahedron Asymmetry, 17, 1684–1687. Web of Science CrossRef CAS Google Scholar
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Hayes, P. Y., Fletcher, M. T., Crow, S., McGrath, M. J., Tu, Y. Q., Zhang, H., Hungerford, N. L., McErlean, C. S. P., Stok, J. E., Moore, C. J., DeVoss, J. J. & Kitching, W. (2003). Quirality, 15, S116–S127. CAS Google Scholar
Paddon-Jones, G. C., McErlean, C. S. P., Hayes, P., Moore, C. J., Konig, W. A. & Kitching, W. (2001). J. Org. Chem. 66, 7487–7495. Web of Science PubMed CAS Google Scholar
Rao, S. T., Westhof, E. & Sundaralingam, M. (1981). Acta Cryst. A37, 421–425. CrossRef CAS IUCr Journals Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The 2,6-dioxabicyclo[3.3.0]octan-3-one skeleton is present in a number of natural products possessing diverse biological activities (Agrawal et al., 2006; Banda et al., 2006; Paddon-Jones et al., 2001). We have described a new methodology for the synthesis of chiral tetrahydrofurans using L-malic acid (Álvarez et al., 2010) as starting material. Using this strategy, a formal synthesis of (7S)-Hagen's gland lactones was achieved by an intramolecular lactonization protocol. These bicyclic lactones can be considered as potential bio-control agents for fruit-fly populations in different countries (Hayes et al., 2003). Analyzing the crystallographic data, it is observed that both five-membered rings are in twisted envelope conformations Fig.1. The pseudorotation parameters P and τ(M), (Rao et al., 1981), for the 5-membered ring containing O2 are P = 334.4 (4)°, τ(M) = 24.3 (2)°, for reference bond C5–C4, the closest pucker descriptor for this is an Envelope on C(5). The pseudorotation parameters P and τ(M) for the 5-membered ring containing O6 are P = 345.0 (4)°, τ(M) = 26.1 (2)°, for the reference bond C1–C8, the closest pucker descriptor for this is an Envelope on C1. The dihedral angle between the main planes of the bicyclic lactone residue is 69.52°. The dihedral angle between the tetrahydrofuran plane and the plane of the ester residue (defined as the C1'-O2'-C3'-C4' atoms) is 55.94°. The C1'-O2'-C3'-C4' atoms of the lateral chain are co-planar.