organic compounds
10-(3,5-Dinitrophenyl)-5,5-difluoro-1,3,7,9-tetramethyl-5H-dipyrrolo[1,2-c:2′,1′-f][1,3,2]diazaborinin-4-ium-5-uide
aKey Laboratory of Fine Petrochemical Technology, Changzhou University, Changzhou 213164, People's Republic of China
*Correspondence e-mail: hemingyangjpu@yahoo.com
In an effort to discover new potential boron-dipyrromethene (BODIPY) dyes, the title compound, C19H17BF2N4O4, was prepared from 2,4-dimethylpyrrole, 3,5-dinitrobenzaldehyde and boron trifluoride in a one-pot reaction. The BODIPY fragment is nearly planar, with a maximum deviation from the least-squares plane of 0.251 (2) Å, and the benzene ring is inclined at a dihedral angle of 86.8 (6)° to the BODIPY mean plane. In the crystal, pairs of C—H⋯F hydrogen bonds connect neighbouring molecules into inversion dimers, which are linked by further strong C—H⋯F interactions, forming a supramolecular layered array parallel to the bc plane.
Related literature
For the use of related compounds for fluorescence analysis, see: Weiner et al. (2001); Gabe et al. (2004). For the structural characterization of related compounds, see: Euler et al. (2002a,b); Cui et al. (2006). For the synthetic procedure, see: Kollmannsberger et al. (1998).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell APEX2 and SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536813008027/zl2539sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813008027/zl2539Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536813008027/zl2539Isup3.cml
Compound (I) was synthesized by the reaction of 2,4-dimethylpyrrole with 3,5-dinitro-benzaldehyde and boron trifluoride in a one-pot reaction (Kollmannsberger et al., 1998). General procedure: 4.2 mmol of 2,4-dimethylpyrrole and 2 mmol of the aldehyde were dissolved in 200 ml of absolute methylene chloride under nitrogen atmosphere. One drop of trifluoroacetic acid was added and the solution was stirred at room temperature until TLC-control showed complete consumption of the aldehyde. At this point, 2 mmol dichlorodicyanobenzoquinone (DDQ) was added, and stirring was continued for 30 min followed by quick addition of 4 ml of triethylamine and 4 ml of boron trifluoride etherate. After stirring for another 3 h, the reaction mixture was washed with water and dried, and the solvent was evaporated. The residue was chromatographed twice on a silica column (a mixture of dichloromethane and hexane, v:v: 1:1, was used as the eluting solvent). Total yield: 42%. Purple crystals. 1H NMR (CDCl3): δ 1.46 (s, 6H, CH3), 1.96 (s, 6H, CH3), 5.62 (s, 2H, CH), 8.65 (s, 2H, CH), 8.90 (s, H, CH). MS (ESI), m/z: 414.1 [M—H]-. HRMS: [M—H]- calculated: 414.176, measured: 414.143.
Purple single crystals suitable for X-ray analysis were obtained by dissolving (I) (0.15 g) in a hexane/dichloromethane (15 ml, v:v: 1:3) mixture and slowly evaporating the solvent at room temperature for a period of about one month.
All H atoms bound to C atoms were assigned to calculated positions, with C—H = 0.96 Å (methyl) and 0.93 Å (aromatic), and refined using a riding model, with Uiso(H)=1.2Ueq (C).
In the past decades, many novel boron-dipyrromethene (BODIPY) dyes were developed for fluorescence analysis (Weiner et al., 2001; Gabe et al., 2004) and their crystal structures were investigated at the same time (Euler et al., 2002a,b). As part of our ongoing studies of the substituent effect on the solid-state structures of BODIPY derivatives (Cui et al., 2006), we report herein the crystal strcuture of the title compound, 4,4-difluoro-1,3,5,7-tetramethyl-8-(3',5'-dinitro-phenyl)-4-bora-3a,4a-diaza-s-indacene, (I).
A perspective view of (I), including the atomic numbering scheme, is shown in Fig. 1. The bond lengths and angles are within normal ranges. In the
the BODIPY fragment is nearly planar, with a maximum deviation from the least-squares plane of 0.251 (2) Å. Owing to the the benzene ring is almost perpendicular to the boron-dipyrromethene mean plane with a dihedral angle of 86.8 (6)° between the mean planes of the BODIPY fragment and the benzene ring. Intermolecular C5—H5···F2 (Table 1) hydrogen bonding connects two neighbouring molecules into a centrosymmetric dimer, which is further linked by another strong C—H···F interaction (C13—H13A···F1, Table 1) to form a supramolecular layered array, as depicted in Fig. 2.For the use of related compounds for fluorescence analysis, see: Weiner et al. (2001); Gabe et al. (2004). For the structural characterization of related compounds, see: Euler et al. (2002a,b); Cui et al. (2006). For the synthetic procedure, see: Kollmannsberger et al. (1998).
Data collection: APEX2 (Bruker, 2007); cell
APEX2 and SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C19H17BF2N4O4 | F(000) = 1712 |
Mr = 414.18 | Dx = 1.434 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 2164 reflections |
a = 29.016 (3) Å | θ = 2.4–24.3° |
b = 9.1763 (9) Å | µ = 0.11 mm−1 |
c = 16.8294 (16) Å | T = 295 K |
β = 121.086 (2)° | Block, purple |
V = 3837.4 (7) Å3 | 0.21 × 0.21 × 0.16 mm |
Z = 8 |
Bruker APEXII CCD diffractometer | 3767 independent reflections |
Radiation source: fine-focus sealed tube | 2276 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
φ and ω scans | θmax = 26.0°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | h = −34→35 |
Tmin = 0.973, Tmax = 0.985 | k = −9→11 |
11322 measured reflections | l = −20→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0507P)2] where P = (Fo2 + 2Fc2)/3 |
3767 reflections | (Δ/σ)max < 0.001 |
275 parameters | Δρmax = 0.19 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C19H17BF2N4O4 | V = 3837.4 (7) Å3 |
Mr = 414.18 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 29.016 (3) Å | µ = 0.11 mm−1 |
b = 9.1763 (9) Å | T = 295 K |
c = 16.8294 (16) Å | 0.21 × 0.21 × 0.16 mm |
β = 121.086 (2)° |
Bruker APEXII CCD diffractometer | 3767 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2003) | 2276 reflections with I > 2σ(I) |
Tmin = 0.973, Tmax = 0.985 | Rint = 0.035 |
11322 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.114 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.19 e Å−3 |
3767 reflections | Δρmin = −0.19 e Å−3 |
275 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
B1 | 0.21971 (10) | 0.3620 (3) | 0.35983 (14) | 0.0507 (6) | |
N1 | 0.02477 (8) | 0.7770 (2) | 0.44115 (15) | 0.0721 (5) | |
N2 | 0.10066 (8) | 0.3996 (2) | 0.68190 (12) | 0.0618 (5) | |
N3 | 0.16759 (6) | 0.29249 (18) | 0.34430 (10) | 0.0501 (4) | |
N4 | 0.24400 (6) | 0.45079 (17) | 0.45002 (10) | 0.0481 (4) | |
O1 | −0.00805 (8) | 0.8018 (2) | 0.46364 (14) | 0.1030 (6) | |
O2 | 0.02809 (8) | 0.8443 (2) | 0.38261 (15) | 0.1074 (7) | |
O3 | 0.07160 (8) | 0.44618 (19) | 0.70880 (11) | 0.0898 (6) | |
O4 | 0.12896 (7) | 0.2925 (2) | 0.71305 (11) | 0.0828 (5) | |
C1 | 0.06408 (8) | 0.5895 (2) | 0.56281 (13) | 0.0539 (5) | |
H1 | 0.0419 | 0.6201 | 0.5843 | 0.065* | |
C2 | 0.06252 (8) | 0.6547 (2) | 0.48802 (13) | 0.0519 (5) | |
C3 | 0.09496 (8) | 0.6107 (2) | 0.45427 (13) | 0.0513 (5) | |
H3A | 0.0926 | 0.6562 | 0.4029 | 0.062* | |
C4 | 0.13103 (7) | 0.4974 (2) | 0.49844 (11) | 0.0445 (5) | |
C5 | 0.13404 (8) | 0.4307 (2) | 0.57523 (12) | 0.0468 (5) | |
H5 | 0.1586 | 0.3562 | 0.6064 | 0.056* | |
C6 | 0.09981 (8) | 0.4773 (2) | 0.60432 (12) | 0.0474 (5) | |
C7 | 0.16365 (7) | 0.4434 (2) | 0.45850 (11) | 0.0451 (5) | |
C8 | 0.13997 (8) | 0.3386 (2) | 0.38813 (12) | 0.0493 (5) | |
C9 | 0.21486 (8) | 0.4977 (2) | 0.49101 (12) | 0.0450 (5) | |
C10 | 0.24901 (8) | 0.5908 (2) | 0.56652 (12) | 0.0478 (5) | |
C11 | 0.29708 (8) | 0.5971 (2) | 0.56926 (13) | 0.0544 (5) | |
H11 | 0.3273 | 0.6492 | 0.6121 | 0.065* | |
C12 | 0.29309 (8) | 0.5123 (2) | 0.49699 (13) | 0.0524 (5) | |
C13 | 0.23721 (9) | 0.6657 (2) | 0.63311 (13) | 0.0596 (6) | |
H13A | 0.2356 | 0.5949 | 0.6735 | 0.089* | |
H13B | 0.2033 | 0.7155 | 0.5992 | 0.089* | |
H13C | 0.2652 | 0.7349 | 0.6693 | 0.089* | |
C14 | 0.04881 (9) | 0.2612 (3) | 0.37558 (16) | 0.0758 (7) | |
H14A | 0.0298 | 0.3520 | 0.3555 | 0.114* | |
H14B | 0.0651 | 0.2521 | 0.4416 | 0.114* | |
H14C | 0.0241 | 0.1821 | 0.3454 | 0.114* | |
C15 | 0.09174 (8) | 0.2570 (2) | 0.35092 (13) | 0.0563 (5) | |
C16 | 0.09160 (9) | 0.1637 (3) | 0.28651 (13) | 0.0636 (6) | |
H16 | 0.0650 | 0.0956 | 0.2515 | 0.076* | |
C17 | 0.13746 (9) | 0.1876 (2) | 0.28228 (13) | 0.0572 (5) | |
C18 | 0.15291 (10) | 0.1167 (3) | 0.21963 (14) | 0.0707 (7) | |
H18A | 0.1544 | 0.1887 | 0.1797 | 0.106* | |
H18B | 0.1267 | 0.0440 | 0.1827 | 0.106* | |
H18C | 0.1876 | 0.0716 | 0.2561 | 0.106* | |
C19 | 0.33455 (9) | 0.4896 (3) | 0.47106 (15) | 0.0665 (6) | |
H19A | 0.3463 | 0.3900 | 0.4824 | 0.100* | |
H19B | 0.3647 | 0.5527 | 0.5076 | 0.100* | |
H19C | 0.3193 | 0.5116 | 0.4065 | 0.100* | |
F1 | 0.20797 (5) | 0.45458 (14) | 0.28592 (7) | 0.0708 (4) | |
F2 | 0.25531 (5) | 0.25610 (13) | 0.36548 (8) | 0.0695 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
B1 | 0.0537 (15) | 0.0672 (15) | 0.0426 (12) | 0.0197 (12) | 0.0330 (11) | 0.0136 (11) |
N1 | 0.0556 (12) | 0.0716 (13) | 0.0916 (15) | 0.0124 (10) | 0.0396 (11) | 0.0006 (11) |
N2 | 0.0609 (13) | 0.0867 (14) | 0.0507 (10) | −0.0185 (11) | 0.0379 (10) | −0.0127 (10) |
N3 | 0.0512 (10) | 0.0681 (11) | 0.0365 (8) | 0.0141 (9) | 0.0266 (8) | 0.0045 (8) |
N4 | 0.0472 (10) | 0.0679 (11) | 0.0399 (8) | 0.0095 (8) | 0.0302 (8) | 0.0095 (8) |
O1 | 0.0840 (13) | 0.1048 (15) | 0.1403 (16) | 0.0355 (11) | 0.0721 (13) | 0.0046 (12) |
O2 | 0.0984 (15) | 0.1041 (15) | 0.1317 (16) | 0.0395 (12) | 0.0679 (13) | 0.0494 (14) |
O3 | 0.1098 (15) | 0.1162 (14) | 0.0872 (12) | −0.0138 (11) | 0.0820 (11) | −0.0146 (10) |
O4 | 0.0828 (12) | 0.1060 (14) | 0.0694 (10) | 0.0068 (11) | 0.0462 (9) | 0.0238 (10) |
C1 | 0.0446 (12) | 0.0673 (14) | 0.0607 (12) | −0.0095 (10) | 0.0349 (10) | −0.0200 (11) |
C2 | 0.0401 (11) | 0.0577 (12) | 0.0586 (12) | 0.0029 (10) | 0.0259 (10) | −0.0053 (10) |
C3 | 0.0438 (12) | 0.0643 (13) | 0.0493 (11) | 0.0043 (10) | 0.0265 (10) | 0.0031 (10) |
C4 | 0.0372 (11) | 0.0629 (12) | 0.0381 (10) | 0.0010 (9) | 0.0227 (9) | −0.0028 (9) |
C5 | 0.0422 (11) | 0.0621 (12) | 0.0385 (10) | 0.0014 (9) | 0.0226 (9) | −0.0045 (9) |
C6 | 0.0443 (12) | 0.0645 (13) | 0.0398 (10) | −0.0092 (10) | 0.0263 (9) | −0.0097 (10) |
C7 | 0.0426 (11) | 0.0635 (12) | 0.0334 (10) | 0.0109 (10) | 0.0227 (9) | 0.0072 (9) |
C8 | 0.0438 (12) | 0.0721 (13) | 0.0368 (10) | 0.0096 (10) | 0.0242 (9) | 0.0019 (10) |
C9 | 0.0465 (12) | 0.0617 (12) | 0.0359 (9) | 0.0090 (10) | 0.0278 (9) | 0.0091 (9) |
C10 | 0.0517 (12) | 0.0574 (12) | 0.0416 (10) | 0.0060 (10) | 0.0293 (9) | 0.0102 (9) |
C11 | 0.0486 (13) | 0.0685 (14) | 0.0502 (11) | −0.0013 (10) | 0.0285 (10) | 0.0064 (10) |
C12 | 0.0475 (13) | 0.0694 (14) | 0.0489 (11) | 0.0071 (10) | 0.0310 (10) | 0.0171 (11) |
C13 | 0.0604 (14) | 0.0709 (14) | 0.0540 (12) | −0.0030 (11) | 0.0342 (11) | −0.0046 (11) |
C14 | 0.0470 (13) | 0.1140 (19) | 0.0679 (14) | −0.0121 (13) | 0.0308 (11) | −0.0276 (14) |
C15 | 0.0429 (12) | 0.0824 (15) | 0.0398 (10) | 0.0061 (11) | 0.0186 (9) | −0.0057 (10) |
C16 | 0.0509 (14) | 0.0831 (16) | 0.0476 (12) | 0.0036 (12) | 0.0189 (10) | −0.0102 (11) |
C17 | 0.0602 (14) | 0.0725 (14) | 0.0369 (10) | 0.0164 (12) | 0.0235 (10) | 0.0029 (11) |
C18 | 0.0807 (17) | 0.0867 (16) | 0.0507 (12) | 0.0180 (14) | 0.0381 (12) | −0.0042 (12) |
C19 | 0.0601 (14) | 0.0842 (16) | 0.0769 (14) | 0.0077 (12) | 0.0508 (12) | 0.0157 (13) |
F1 | 0.0903 (10) | 0.0893 (9) | 0.0471 (6) | 0.0167 (7) | 0.0457 (6) | 0.0206 (6) |
F2 | 0.0640 (8) | 0.0823 (8) | 0.0780 (8) | 0.0215 (7) | 0.0478 (7) | 0.0026 (6) |
B1—F2 | 1.385 (2) | C7—C8 | 1.400 (3) |
B1—F1 | 1.396 (2) | C8—C15 | 1.416 (3) |
B1—N3 | 1.534 (3) | C9—C10 | 1.423 (3) |
B1—N4 | 1.536 (3) | C10—C11 | 1.373 (3) |
N1—O2 | 1.208 (2) | C10—C13 | 1.497 (2) |
N1—O1 | 1.214 (2) | C11—C12 | 1.397 (3) |
N1—C2 | 1.480 (3) | C11—H11 | 0.9300 |
N2—O4 | 1.213 (2) | C12—C19 | 1.491 (3) |
N2—O3 | 1.222 (2) | C13—H13A | 0.9600 |
N2—C6 | 1.477 (2) | C13—H13B | 0.9600 |
N3—C17 | 1.356 (3) | C13—H13C | 0.9600 |
N3—C8 | 1.405 (2) | C14—C15 | 1.503 (3) |
N4—C12 | 1.345 (2) | C14—H14A | 0.9600 |
N4—C9 | 1.407 (2) | C14—H14B | 0.9600 |
C1—C6 | 1.369 (3) | C14—H14C | 0.9600 |
C1—C2 | 1.373 (3) | C15—C16 | 1.380 (3) |
C1—H1 | 0.9300 | C16—C17 | 1.386 (3) |
C2—C3 | 1.387 (2) | C16—H16 | 0.9300 |
C3—C4 | 1.387 (3) | C17—C18 | 1.492 (3) |
C3—H3A | 0.9300 | C18—H18A | 0.9600 |
C4—C5 | 1.392 (2) | C18—H18B | 0.9600 |
C4—C7 | 1.500 (2) | C18—H18C | 0.9600 |
C5—C6 | 1.383 (2) | C19—H19A | 0.9600 |
C5—H5 | 0.9300 | C19—H19B | 0.9600 |
C7—C9 | 1.385 (3) | C19—H19C | 0.9600 |
F2—B1—F1 | 108.56 (15) | N4—C9—C10 | 107.70 (17) |
F2—B1—N3 | 110.77 (18) | C11—C10—C9 | 106.38 (16) |
F1—B1—N3 | 109.62 (16) | C11—C10—C13 | 125.20 (19) |
F2—B1—N4 | 111.02 (16) | C9—C10—C13 | 128.40 (18) |
F1—B1—N4 | 109.52 (18) | C10—C11—C12 | 108.75 (18) |
N3—B1—N4 | 107.34 (14) | C10—C11—H11 | 125.6 |
O2—N1—O1 | 124.3 (2) | C12—C11—H11 | 125.6 |
O2—N1—C2 | 118.27 (19) | N4—C12—C11 | 109.37 (17) |
O1—N1—C2 | 117.4 (2) | N4—C12—C19 | 122.61 (19) |
O4—N2—O3 | 124.47 (19) | C11—C12—C19 | 128.0 (2) |
O4—N2—C6 | 118.18 (17) | C10—C13—H13A | 109.5 |
O3—N2—C6 | 117.3 (2) | C10—C13—H13B | 109.5 |
C17—N3—C8 | 107.57 (17) | H13A—C13—H13B | 109.5 |
C17—N3—B1 | 127.84 (16) | C10—C13—H13C | 109.5 |
C8—N3—B1 | 124.36 (17) | H13A—C13—H13C | 109.5 |
C12—N4—C9 | 107.79 (16) | H13B—C13—H13C | 109.5 |
C12—N4—B1 | 127.57 (16) | C15—C14—H14A | 109.5 |
C9—N4—B1 | 124.17 (16) | C15—C14—H14B | 109.5 |
C6—C1—C2 | 116.96 (17) | H14A—C14—H14B | 109.5 |
C6—C1—H1 | 121.5 | C15—C14—H14C | 109.5 |
C2—C1—H1 | 121.5 | H14A—C14—H14C | 109.5 |
C1—C2—C3 | 122.70 (19) | H14B—C14—H14C | 109.5 |
C1—C2—N1 | 118.96 (18) | C16—C15—C8 | 106.07 (18) |
C3—C2—N1 | 118.34 (18) | C16—C15—C14 | 124.5 (2) |
C2—C3—C4 | 118.85 (18) | C8—C15—C14 | 129.41 (18) |
C2—C3—H3A | 120.6 | C15—C16—C17 | 109.2 (2) |
C4—C3—H3A | 120.6 | C15—C16—H16 | 125.4 |
C3—C4—C5 | 119.71 (16) | C17—C16—H16 | 125.4 |
C3—C4—C7 | 118.93 (15) | N3—C17—C16 | 109.11 (17) |
C5—C4—C7 | 121.26 (17) | N3—C17—C18 | 123.0 (2) |
C6—C5—C4 | 118.72 (18) | C16—C17—C18 | 127.9 (2) |
C6—C5—H5 | 120.6 | C17—C18—H18A | 109.5 |
C4—C5—H5 | 120.6 | C17—C18—H18B | 109.5 |
C1—C6—C5 | 123.04 (18) | H18A—C18—H18B | 109.5 |
C1—C6—N2 | 118.49 (17) | C17—C18—H18C | 109.5 |
C5—C6—N2 | 118.45 (19) | H18A—C18—H18C | 109.5 |
C9—C7—C8 | 122.66 (16) | H18B—C18—H18C | 109.5 |
C9—C7—C4 | 120.02 (17) | C12—C19—H19A | 109.5 |
C8—C7—C4 | 117.32 (16) | C12—C19—H19B | 109.5 |
C7—C8—N3 | 119.15 (17) | H19A—C19—H19B | 109.5 |
C7—C8—C15 | 132.72 (17) | C12—C19—H19C | 109.5 |
N3—C8—C15 | 108.06 (17) | H19A—C19—H19C | 109.5 |
C7—C9—N4 | 119.35 (17) | H19B—C19—H19C | 109.5 |
C7—C9—C10 | 132.80 (16) | ||
F2—B1—N3—C17 | −47.3 (2) | C9—C7—C8—C15 | 172.3 (2) |
F1—B1—N3—C17 | 72.5 (2) | C4—C7—C8—C15 | −8.1 (3) |
N4—B1—N3—C17 | −168.62 (16) | C17—N3—C8—C7 | 177.55 (16) |
F2—B1—N3—C8 | 138.92 (17) | B1—N3—C8—C7 | −7.6 (3) |
F1—B1—N3—C8 | −101.31 (19) | C17—N3—C8—C15 | 0.4 (2) |
N4—B1—N3—C8 | 17.6 (2) | B1—N3—C8—C15 | 175.24 (16) |
F2—B1—N4—C12 | 48.5 (3) | C8—C7—C9—N4 | 2.4 (3) |
F1—B1—N4—C12 | −71.4 (2) | C4—C7—C9—N4 | −177.16 (15) |
N3—B1—N4—C12 | 169.67 (17) | C8—C7—C9—C10 | −172.43 (19) |
F2—B1—N4—C9 | −140.44 (17) | C4—C7—C9—C10 | 8.0 (3) |
F1—B1—N4—C9 | 99.7 (2) | C12—N4—C9—C7 | −176.52 (16) |
N3—B1—N4—C9 | −19.2 (2) | B1—N4—C9—C7 | 10.9 (3) |
C6—C1—C2—C3 | 0.4 (3) | C12—N4—C9—C10 | −0.5 (2) |
C6—C1—C2—N1 | −179.64 (17) | B1—N4—C9—C10 | −173.08 (16) |
O2—N1—C2—C1 | 171.6 (2) | C7—C9—C10—C11 | 175.1 (2) |
O1—N1—C2—C1 | −9.3 (3) | N4—C9—C10—C11 | −0.2 (2) |
O2—N1—C2—C3 | −8.4 (3) | C7—C9—C10—C13 | −3.3 (3) |
O1—N1—C2—C3 | 170.7 (2) | N4—C9—C10—C13 | −178.58 (18) |
C1—C2—C3—C4 | −0.9 (3) | C9—C10—C11—C12 | 0.8 (2) |
N1—C2—C3—C4 | 179.11 (17) | C13—C10—C11—C12 | 179.24 (18) |
C2—C3—C4—C5 | 0.0 (3) | C9—N4—C12—C11 | 1.0 (2) |
C2—C3—C4—C7 | 176.17 (17) | B1—N4—C12—C11 | 173.25 (17) |
C3—C4—C5—C6 | 1.5 (3) | C9—N4—C12—C19 | −178.41 (17) |
C7—C4—C5—C6 | −174.66 (17) | B1—N4—C12—C19 | −6.1 (3) |
C2—C1—C6—C5 | 1.1 (3) | C10—C11—C12—N4 | −1.1 (2) |
C2—C1—C6—N2 | −176.91 (16) | C10—C11—C12—C19 | 178.22 (19) |
C4—C5—C6—C1 | −2.1 (3) | C7—C8—C15—C16 | −176.2 (2) |
C4—C5—C6—N2 | 175.98 (16) | N3—C8—C15—C16 | 0.4 (2) |
O4—N2—C6—C1 | 173.66 (18) | C7—C8—C15—C14 | 1.6 (4) |
O3—N2—C6—C1 | −4.6 (3) | N3—C8—C15—C14 | 178.3 (2) |
O4—N2—C6—C5 | −4.5 (3) | C8—C15—C16—C17 | −1.0 (2) |
O3—N2—C6—C5 | 177.23 (17) | C14—C15—C16—C17 | −179.0 (2) |
C3—C4—C7—C9 | 94.5 (2) | C8—N3—C17—C16 | −1.0 (2) |
C5—C4—C7—C9 | −89.4 (2) | B1—N3—C17—C16 | −175.65 (17) |
C3—C4—C7—C8 | −85.2 (2) | C8—N3—C17—C18 | 177.46 (18) |
C5—C4—C7—C8 | 91.0 (2) | B1—N3—C17—C18 | 2.8 (3) |
C9—C7—C8—N3 | −4.0 (3) | C15—C16—C17—N3 | 1.3 (2) |
C4—C7—C8—N3 | 175.56 (16) | C15—C16—C17—C18 | −177.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···F2i | 0.93 | 2.51 | 3.307 (2) | 144 |
C13—H13A···F1ii | 0.96 | 2.45 | 3.287 (2) | 146 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z+1; (ii) x, −y+1, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C19H17BF2N4O4 |
Mr | 414.18 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 295 |
a, b, c (Å) | 29.016 (3), 9.1763 (9), 16.8294 (16) |
β (°) | 121.086 (2) |
V (Å3) | 3837.4 (7) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.21 × 0.21 × 0.16 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2003) |
Tmin, Tmax | 0.973, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 11322, 3767, 2276 |
Rint | 0.035 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.114, 1.04 |
No. of reflections | 3767 |
No. of parameters | 275 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.19, −0.19 |
Computer programs: APEX2 (Bruker, 2007), APEX2 and SAINT (Bruker, 2007), SAINT (Bruker, 2007), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
C5—H5···F2i | 0.93 | 2.51 | 3.307 (2) | 143.7 |
C13—H13A···F1ii | 0.96 | 2.45 | 3.287 (2) | 146.0 |
Symmetry codes: (i) −x+1/2, −y+1/2, −z+1; (ii) x, −y+1, z+1/2. |
Acknowledgements
We gratefully acknowledge the financial support from the Open Foundation of Jiangsu Province Key Laboratory of Fine Petrochemical Technology (KF1005) and the Analysis Center of Changzhou University.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the past decades, many novel boron-dipyrromethene (BODIPY) dyes were developed for fluorescence analysis (Weiner et al., 2001; Gabe et al., 2004) and their crystal structures were investigated at the same time (Euler et al., 2002a,b). As part of our ongoing studies of the substituent effect on the solid-state structures of BODIPY derivatives (Cui et al., 2006), we report herein the crystal strcuture of the title compound, 4,4-difluoro-1,3,5,7-tetramethyl-8-(3',5'-dinitro-phenyl)-4-bora-3a,4a-diaza-s-indacene, (I).
A perspective view of (I), including the atomic numbering scheme, is shown in Fig. 1. The bond lengths and angles are within normal ranges. In the asymmetric unit, the BODIPY fragment is nearly planar, with a maximum deviation from the least-squares plane of 0.251 (2) Å. Owing to the steric hindrance, the benzene ring is almost perpendicular to the boron-dipyrromethene mean plane with a dihedral angle of 86.8 (6)° between the mean planes of the BODIPY fragment and the benzene ring. Intermolecular C5—H5···F2 (Table 1) hydrogen bonding connects two neighbouring molecules into a centrosymmetric dimer, which is further linked by another strong C—H···F interaction (C13—H13A···F1, Table 1) to form a supramolecular layered array, as depicted in Fig. 2.