organic compounds
2-Chloro-1-(2,4,4-trimethyl-2,3,4,5-tetrahydro-1H-1,5-benzodiazepin-1-yl)ethanone
aCentre of Advanced Study in Crystallography and Biophysics, University of Madras, Guindy Campus, Chennai 600 025, India, and bDepartment of Chemistry, Government Arts College (Autonomous), Coimbatore 641 018, India
*Correspondence e-mail: mnpsy2004@yahoo.com
In the title compound, C14H19ClN2O, the diazepine ring adopts a boat conformation. The Cl atom of the chloroacetyl group is trans to the N atom of the diazepine ring. In the crystal, the molecules form chains running along the diagonal of the ac plane through N—H⋯O hydrogen bonds.
Related literature
For the biological activity of benzodiazepine derivatives, see: Ponnuswamy et al. (2006); Rahbaek et al. (1999). For related structures see: Thiruvalluvar & Ponnuswamy (2007); Kavitha et al. (2012). For puckering parameters, see: Cremer & Pople (1975) and for asymmetry parameters, see: Nardelli (1983). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813012324/bt6901sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813012324/bt6901Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813012324/bt6901Isup3.cml
To an ice cold solution of tetrahydrobenzodiazepine (1.9 g, 10 m.mol) in anhydrous benzene (50 ml), triethylamine (4 ml, 30 m.mol) and chloroacetylchloride (2.4 ml, 30 m.mol) were added and stirred at room temperature. The resulting solid was purified by recrystallization from benzene to yield pale yellow crystals.
The H atom bonded to N was freely refined. C-bound H atoms were positioned geometrically (C–H = 0.93–0.98 Å) and allowed to ride on their parent atoms, with Uiso(H) = 1.5Ueq(C) for methyl H atoms and 1.2Ueq(C) for all other H atoms.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C14H19ClN2O | F(000) = 568 |
Mr = 266.76 | Dx = 1.255 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 3568 reflections |
a = 10.3971 (3) Å | θ = 2.5–28.5° |
b = 12.2589 (3) Å | µ = 0.26 mm−1 |
c = 11.0994 (3) Å | T = 293 K |
β = 93.953 (1)° | Block, pale yellow |
V = 1411.33 (7) Å3 | 0.23 × 0.22 × 0.20 mm |
Z = 4 |
Bruker SMART APEXII CCD diffractometer | 3568 independent reflections |
Radiation source: fine-focus sealed tube | 2767 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
ω and ϕ scans | θmax = 28.5°, θmin = 2.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −11→13 |
Tmin = 0.942, Tmax = 0.949 | k = −16→14 |
13339 measured reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0584P)2 + 0.253P] where P = (Fo2 + 2Fc2)/3 |
3568 reflections | (Δ/σ)max < 0.001 |
167 parameters | Δρmax = 0.22 e Å−3 |
0 restraints | Δρmin = −0.27 e Å−3 |
C14H19ClN2O | V = 1411.33 (7) Å3 |
Mr = 266.76 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.3971 (3) Å | µ = 0.26 mm−1 |
b = 12.2589 (3) Å | T = 293 K |
c = 11.0994 (3) Å | 0.23 × 0.22 × 0.20 mm |
β = 93.953 (1)° |
Bruker SMART APEXII CCD diffractometer | 3568 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 2767 reflections with I > 2σ(I) |
Tmin = 0.942, Tmax = 0.949 | Rint = 0.018 |
13339 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.120 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.22 e Å−3 |
3568 reflections | Δρmin = −0.27 e Å−3 |
167 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C2 | 0.51697 (13) | 0.25960 (11) | 0.45502 (13) | 0.0430 (3) | |
C3 | 0.42704 (13) | 0.16143 (11) | 0.43872 (12) | 0.0418 (3) | |
H3A | 0.4703 | 0.0989 | 0.4767 | 0.050* | |
H3B | 0.3511 | 0.1759 | 0.4822 | 0.050* | |
C4 | 0.38266 (12) | 0.12997 (12) | 0.31006 (12) | 0.0421 (3) | |
H4 | 0.3297 | 0.1897 | 0.2751 | 0.051* | |
C6 | 0.61213 (12) | 0.07242 (11) | 0.29286 (11) | 0.0378 (3) | |
C7 | 0.65316 (15) | −0.02988 (12) | 0.25761 (13) | 0.0472 (3) | |
H7 | 0.5998 | −0.0720 | 0.2055 | 0.057* | |
C8 | 0.77192 (16) | −0.06946 (13) | 0.29912 (15) | 0.0557 (4) | |
H8 | 0.7995 | −0.1377 | 0.2749 | 0.067* | |
C9 | 0.84918 (16) | −0.00669 (15) | 0.37691 (16) | 0.0584 (4) | |
H9 | 0.9311 | −0.0314 | 0.4026 | 0.070* | |
C10 | 0.80708 (14) | 0.09221 (13) | 0.41727 (13) | 0.0490 (3) | |
H10 | 0.8600 | 0.1321 | 0.4720 | 0.059* | |
C11 | 0.68638 (12) | 0.13399 (11) | 0.37769 (11) | 0.0373 (3) | |
C12 | 0.5320 (2) | 0.28786 (16) | 0.58975 (16) | 0.0687 (5) | |
H12A | 0.5650 | 0.2257 | 0.6344 | 0.103* | |
H12B | 0.4496 | 0.3078 | 0.6171 | 0.103* | |
H12C | 0.5908 | 0.3478 | 0.6021 | 0.103* | |
C13 | 0.46332 (16) | 0.35866 (13) | 0.38470 (19) | 0.0635 (5) | |
H13A | 0.5217 | 0.4189 | 0.3970 | 0.095* | |
H13B | 0.3810 | 0.3780 | 0.4127 | 0.095* | |
H13C | 0.4535 | 0.3413 | 0.3002 | 0.095* | |
C14 | 0.30135 (17) | 0.02757 (15) | 0.30537 (17) | 0.0618 (4) | |
H14A | 0.2749 | 0.0108 | 0.2229 | 0.093* | |
H14B | 0.2265 | 0.0389 | 0.3499 | 0.093* | |
H14C | 0.3510 | −0.0319 | 0.3404 | 0.093* | |
C15 | 0.48304 (13) | 0.14054 (13) | 0.11892 (12) | 0.0449 (3) | |
C16 | 0.60674 (15) | 0.13616 (16) | 0.05310 (14) | 0.0554 (4) | |
H16A | 0.6253 | 0.0611 | 0.0327 | 0.067* | |
H16B | 0.6780 | 0.1633 | 0.1057 | 0.067* | |
N1 | 0.64710 (12) | 0.23518 (10) | 0.41521 (12) | 0.0446 (3) | |
H1 | 0.7043 (18) | 0.2675 (14) | 0.4580 (16) | 0.057 (5)* | |
N5 | 0.49529 (10) | 0.11740 (9) | 0.23764 (9) | 0.0394 (3) | |
O1 | 0.38003 (10) | 0.16453 (13) | 0.06665 (10) | 0.0683 (4) | |
Cl1 | 0.59194 (4) | 0.21546 (4) | −0.07992 (4) | 0.06677 (17) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C2 | 0.0408 (7) | 0.0429 (7) | 0.0454 (7) | 0.0064 (6) | 0.0046 (6) | −0.0003 (6) |
C3 | 0.0388 (7) | 0.0465 (7) | 0.0405 (7) | 0.0047 (6) | 0.0059 (5) | 0.0050 (5) |
C4 | 0.0304 (6) | 0.0524 (8) | 0.0436 (7) | 0.0024 (6) | 0.0021 (5) | 0.0048 (6) |
C6 | 0.0312 (6) | 0.0460 (7) | 0.0359 (6) | 0.0047 (5) | −0.0011 (5) | 0.0016 (5) |
C7 | 0.0464 (8) | 0.0492 (8) | 0.0458 (7) | 0.0031 (6) | 0.0013 (6) | −0.0063 (6) |
C8 | 0.0541 (9) | 0.0532 (8) | 0.0599 (9) | 0.0185 (7) | 0.0053 (7) | −0.0055 (7) |
C9 | 0.0413 (8) | 0.0722 (10) | 0.0605 (9) | 0.0220 (7) | −0.0050 (7) | −0.0028 (8) |
C10 | 0.0371 (7) | 0.0616 (9) | 0.0467 (7) | 0.0073 (6) | −0.0082 (6) | −0.0028 (6) |
C11 | 0.0330 (6) | 0.0436 (7) | 0.0350 (6) | 0.0037 (5) | 0.0009 (5) | 0.0029 (5) |
C12 | 0.0760 (12) | 0.0747 (12) | 0.0563 (10) | −0.0039 (9) | 0.0107 (9) | −0.0193 (8) |
C13 | 0.0508 (9) | 0.0459 (9) | 0.0940 (13) | 0.0107 (7) | 0.0068 (9) | 0.0146 (8) |
C14 | 0.0490 (9) | 0.0716 (11) | 0.0649 (10) | −0.0161 (8) | 0.0047 (7) | −0.0021 (8) |
C15 | 0.0334 (7) | 0.0613 (9) | 0.0393 (7) | −0.0025 (6) | −0.0036 (5) | 0.0043 (6) |
C16 | 0.0420 (8) | 0.0808 (11) | 0.0434 (7) | −0.0005 (7) | 0.0018 (6) | 0.0056 (7) |
N1 | 0.0350 (6) | 0.0442 (6) | 0.0537 (7) | 0.0002 (5) | −0.0026 (5) | −0.0073 (5) |
N5 | 0.0294 (5) | 0.0513 (6) | 0.0369 (5) | 0.0030 (5) | −0.0025 (4) | 0.0014 (5) |
O1 | 0.0380 (6) | 0.1162 (10) | 0.0492 (6) | 0.0051 (6) | −0.0072 (5) | 0.0230 (6) |
Cl1 | 0.0581 (3) | 0.0963 (4) | 0.0461 (2) | −0.0130 (2) | 0.00504 (18) | 0.01223 (19) |
C2—N1 | 1.4825 (18) | C10—C11 | 1.3979 (18) |
C2—C3 | 1.527 (2) | C10—H10 | 0.9300 |
C2—C13 | 1.528 (2) | C11—N1 | 1.3793 (17) |
C2—C12 | 1.532 (2) | C12—H12A | 0.9600 |
C3—C4 | 1.5199 (19) | C12—H12B | 0.9600 |
C3—H3A | 0.9700 | C12—H12C | 0.9600 |
C3—H3B | 0.9700 | C13—H13A | 0.9600 |
C4—N5 | 1.4734 (16) | C13—H13B | 0.9600 |
C4—C14 | 1.512 (2) | C13—H13C | 0.9600 |
C4—H4 | 0.9800 | C14—H14A | 0.9600 |
C6—C7 | 1.3896 (19) | C14—H14B | 0.9600 |
C6—C11 | 1.3971 (18) | C14—H14C | 0.9600 |
C6—N5 | 1.4327 (16) | C15—O1 | 1.2184 (17) |
C7—C8 | 1.376 (2) | C15—N5 | 1.3453 (17) |
C7—H7 | 0.9300 | C15—C16 | 1.523 (2) |
C8—C9 | 1.374 (2) | C16—Cl1 | 1.7656 (16) |
C8—H8 | 0.9300 | C16—H16A | 0.9700 |
C9—C10 | 1.374 (2) | C16—H16B | 0.9700 |
C9—H9 | 0.9300 | N1—H1 | 0.835 (19) |
N1—C2—C3 | 111.68 (11) | C6—C11—C10 | 117.15 (12) |
N1—C2—C13 | 108.47 (12) | C2—C12—H12A | 109.5 |
C3—C2—C13 | 111.52 (12) | C2—C12—H12B | 109.5 |
N1—C2—C12 | 107.62 (13) | H12A—C12—H12B | 109.5 |
C3—C2—C12 | 108.31 (12) | C2—C12—H12C | 109.5 |
C13—C2—C12 | 109.14 (14) | H12A—C12—H12C | 109.5 |
C4—C3—C2 | 117.06 (11) | H12B—C12—H12C | 109.5 |
C4—C3—H3A | 108.0 | C2—C13—H13A | 109.5 |
C2—C3—H3A | 108.0 | C2—C13—H13B | 109.5 |
C4—C3—H3B | 108.0 | H13A—C13—H13B | 109.5 |
C2—C3—H3B | 108.0 | C2—C13—H13C | 109.5 |
H3A—C3—H3B | 107.3 | H13A—C13—H13C | 109.5 |
N5—C4—C14 | 110.96 (12) | H13B—C13—H13C | 109.5 |
N5—C4—C3 | 109.75 (10) | C4—C14—H14A | 109.5 |
C14—C4—C3 | 112.07 (12) | C4—C14—H14B | 109.5 |
N5—C4—H4 | 108.0 | H14A—C14—H14B | 109.5 |
C14—C4—H4 | 108.0 | C4—C14—H14C | 109.5 |
C3—C4—H4 | 108.0 | H14A—C14—H14C | 109.5 |
C7—C6—C11 | 120.75 (12) | H14B—C14—H14C | 109.5 |
C7—C6—N5 | 119.64 (12) | O1—C15—N5 | 122.55 (13) |
C11—C6—N5 | 119.56 (12) | O1—C15—C16 | 121.58 (13) |
C8—C7—C6 | 120.64 (14) | N5—C15—C16 | 115.87 (12) |
C8—C7—H7 | 119.7 | C15—C16—Cl1 | 110.72 (11) |
C6—C7—H7 | 119.7 | C15—C16—H16A | 109.5 |
C9—C8—C7 | 119.02 (14) | Cl1—C16—H16A | 109.5 |
C9—C8—H8 | 120.5 | C15—C16—H16B | 109.5 |
C7—C8—H8 | 120.5 | Cl1—C16—H16B | 109.5 |
C8—C9—C10 | 120.89 (14) | H16A—C16—H16B | 108.1 |
C8—C9—H9 | 119.6 | C11—N1—C2 | 124.54 (12) |
C10—C9—H9 | 119.6 | C11—N1—H1 | 112.6 (12) |
C9—C10—C11 | 121.33 (14) | C2—N1—H1 | 111.3 (12) |
C9—C10—H10 | 119.3 | C15—N5—C6 | 121.36 (11) |
C11—C10—H10 | 119.3 | C15—N5—C4 | 119.16 (11) |
N1—C11—C6 | 121.87 (12) | C6—N5—C4 | 119.29 (10) |
N1—C11—C10 | 120.84 (12) | ||
N1—C2—C3—C4 | −70.58 (15) | C6—C11—N1—C2 | 48.60 (19) |
C13—C2—C3—C4 | 50.97 (17) | C10—C11—N1—C2 | −135.87 (15) |
C12—C2—C3—C4 | 171.08 (13) | C3—C2—N1—C11 | −5.18 (19) |
C2—C3—C4—N5 | 52.53 (16) | C13—C2—N1—C11 | −128.48 (15) |
C2—C3—C4—C14 | 176.30 (12) | C12—C2—N1—C11 | 113.57 (15) |
C11—C6—C7—C8 | −4.6 (2) | O1—C15—N5—C6 | 169.69 (15) |
N5—C6—C7—C8 | 172.60 (14) | C16—C15—N5—C6 | −10.9 (2) |
C6—C7—C8—C9 | 0.5 (2) | O1—C15—N5—C4 | −5.1 (2) |
C7—C8—C9—C10 | 2.8 (3) | C16—C15—N5—C4 | 174.26 (13) |
C8—C9—C10—C11 | −2.1 (3) | C7—C6—N5—C15 | −63.37 (18) |
C7—C6—C11—N1 | −179.24 (13) | C11—C6—N5—C15 | 113.83 (15) |
N5—C6—C11—N1 | 3.60 (19) | C7—C6—N5—C4 | 111.44 (15) |
C7—C6—C11—C10 | 5.1 (2) | C11—C6—N5—C4 | −71.37 (16) |
N5—C6—C11—C10 | −172.09 (12) | C14—C4—N5—C15 | 86.63 (16) |
C9—C10—C11—N1 | −177.52 (15) | C3—C4—N5—C15 | −148.96 (12) |
C9—C10—C11—C6 | −1.8 (2) | C14—C4—N5—C6 | −88.29 (15) |
O1—C15—C16—Cl1 | 21.9 (2) | C3—C4—N5—C6 | 36.11 (17) |
N5—C15—C16—Cl1 | −157.53 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.835 (19) | 2.276 (19) | 3.1049 (16) | 171.5 (17) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C14H19ClN2O |
Mr | 266.76 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.3971 (3), 12.2589 (3), 11.0994 (3) |
β (°) | 93.953 (1) |
V (Å3) | 1411.33 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.26 |
Crystal size (mm) | 0.23 × 0.22 × 0.20 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.942, 0.949 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13339, 3568, 2767 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.672 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.120, 1.07 |
No. of reflections | 3568 |
No. of parameters | 167 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.27 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1···O1i | 0.835 (19) | 2.276 (19) | 3.1049 (16) | 171.5 (17) |
Symmetry code: (i) x+1/2, −y+1/2, z+1/2. |
Acknowledgements
SP thanks the UGC, New Delhi, for financial assistance in the form of a major research project.
References
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Various substituted 1,5-benzodiazepines have been synthesized and their stereochemistry has been reported (Ponnuswamy et al., 2006). Among these, the benzodiazepines act as a class of psychoactive drugs. Benzodiazepines are known for their natural occurrence in filamentous fungi and actinomycetes of the genera pencillium, aspergillus and streptomyces (Rahbaek et al., 1999). Benzodiazepines from aspergillus include asperlicin, which is used for the treatment of gastrointestinal and central nervous system disorders. Against this background and to ascertain the molecular structure and conformation, the X-ray crystal structure determination of the title compound has been carried out.
The ORTEP plot of the molecule is shown in Fig. 1. The chloro substituted benzodiazepine derivative crystallizes in the monoclinic space group P21/n. The diazepine ring system adopts a boat conformation (Kavitha et al., 2012). The puckering parameters (Cremer & Pople, 1975) and the asymmetry parameters (Nardelli, 1983) are: q2=0.9558 (2) Å, q3 = 0.1431 (2) Å, ϕ2 = 16.93 (9)° and Δs(C6)= 25.13 (2)°. The Cl atom of the chloroacetyl group is trans to the N atom of the diazepine ring which is evidenced from the torsion angle [N5—C15—C16—CL1=]-157.5 (1)°. The bond lengths C16—CL1 and C15—O1 [1.770 (2) Å & 1.219 (2) Å] are comparable with the mean value reported in the literature (Allen et al., 1987). The carbonyl group is oriented anti to C6 [C6—N5—C15—O1=] 169.7 (2)° and syn to C4 [C4—N5—C15—O1=] -5.12 (2)°. The crystal packing shows that the molecules form linear chains linked through N—H···O hydrogen bonds. The chains run along the diagonal of the ac plane (Fig. 2).