organic compounds
(E)-9-(But-2-en-1-yl)-6-chloro-9H-purine
aCentre for Materials Science and Nanotechnology, Department of Chemistry, University of Oslo, PO Box 1126, 0315 Oslo, Norway, and bDepartment of Chemistry, University of Oslo, PO Box 1033, 0315 Oslo, Norway
*Correspondence e-mail: fredrik.lundvall@smn.uio.no, jindrich.kania@kjemi.uio.no
The 9H9ClN4, contains two molecules. In the crystal, the molecules are ordered in a chain-like fashion along the a axis, and form layers offset relative to the C plane by approximately 30°. This ordering does not, however, appear to be directed by classical hydrogen bonding.The allylic side chains of both independent molecules are disordered, with occupancies of 0.870 (4) and 0.934 (3) for the major components. The disorder components represent two possible spatial orientations of the atoms around the C=C double bond.
of the title compound, CExperimental
Crystal data
|
Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2004) and ChemBioDraw Ultra (CambridgeSoft, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536813010416/lr2100sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813010416/lr2100Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813010416/lr2100Isup3.cml
The title compound was synthesized by the method described in Kania et al. (2013) (compound 14a).
H-atoms were positioned geometrically at distances of 0.95 Å (CH), 0.99 Å (CH2) and 0.98 Å (CH3), and refined using a riding model with Uiso (H)=1.2 Ueq (CH and CH2) and Uiso (H)=1.5 Ueq (CH3)
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg, 2004) and ChemBioDraw Ultra (CambridgeSoft, 2009); software used to prepare material for publication: publCIF (Westrip, 2010).C9H9ClN4 | Z = 4 |
Mr = 208.65 | F(000) = 432 |
Triclinic, P1 | Dx = 1.462 Mg m−3 |
Hall symbol: -P 1 | Melting point: 339 K |
a = 8.1818 (11) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.7103 (13) Å | Cell parameters from 8169 reflections |
c = 13.9435 (19) Å | θ = 2.5–28.8° |
α = 69.642 (1)° | µ = 0.37 mm−1 |
β = 75.448 (1)° | T = 100 K |
γ = 67.032 (1)° | Rod, colourless |
V = 947.6 (2) Å3 | 1.13 × 0.35 × 0.22 mm |
Bruker APEXII CCD diffractometer | 4428 independent reflections |
Radiation source: fine-focus sealed tube | 4103 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.017 |
ϕ and ω scans | θmax = 28.8°, θmin = 1.6° |
Absorption correction: numerical (SADABS; Bruker, 2005) | h = −11→10 |
Tmin = 0.683, Tmax = 0.924 | k = −12→12 |
10801 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.070 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0292P)2 + 0.3823P] where P = (Fo2 + 2Fc2)/3 |
4428 reflections | (Δ/σ)max = 0.001 |
283 parameters | Δρmax = 0.34 e Å−3 |
4 restraints | Δρmin = −0.30 e Å−3 |
C9H9ClN4 | γ = 67.032 (1)° |
Mr = 208.65 | V = 947.6 (2) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.1818 (11) Å | Mo Kα radiation |
b = 9.7103 (13) Å | µ = 0.37 mm−1 |
c = 13.9435 (19) Å | T = 100 K |
α = 69.642 (1)° | 1.13 × 0.35 × 0.22 mm |
β = 75.448 (1)° |
Bruker APEXII CCD diffractometer | 4428 independent reflections |
Absorption correction: numerical (SADABS; Bruker, 2005) | 4103 reflections with I > 2σ(I) |
Tmin = 0.683, Tmax = 0.924 | Rint = 0.017 |
10801 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 4 restraints |
wR(F2) = 0.070 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.34 e Å−3 |
4428 reflections | Δρmin = −0.30 e Å−3 |
283 parameters |
Experimental. Due to the weak scattering nature of the compound, a large crystal (1.13x0.35x0.22 mm) was used to get satisfactory data for refinement. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
Cl-1 | 0.80714 (4) | 0.34683 (3) | 0.90852 (2) | 0.02519 (8) | |
Cl-2 | 0.56350 (4) | 0.66115 (3) | 0.58169 (2) | 0.02513 (8) | |
N1-1 | 0.68069 (12) | 0.64840 (11) | 0.83023 (7) | 0.02118 (19) | |
N3-1 | 0.37832 (12) | 0.80607 (11) | 0.79779 (7) | 0.01992 (18) | |
N9-1 | 0.18663 (12) | 0.65085 (11) | 0.83852 (7) | 0.01988 (18) | |
N7-1 | 0.38398 (13) | 0.41103 (11) | 0.89887 (7) | 0.02212 (19) | |
N9-2 | 0.18425 (12) | 0.33227 (11) | 0.67452 (7) | 0.01990 (18) | |
N3-2 | 0.49116 (12) | 0.19050 (10) | 0.70937 (7) | 0.02115 (19) | |
N1-2 | 0.66555 (13) | 0.36050 (11) | 0.66514 (7) | 0.02249 (19) | |
N7-2 | 0.19524 (13) | 0.57777 (11) | 0.61328 (7) | 0.0240 (2) | |
C2-1 | 0.54905 (15) | 0.78443 (13) | 0.79925 (8) | 0.0217 (2) | |
H2-1 | 0.5818 | 0.8756 | 0.7757 | 0.026* | |
C4-1 | 0.34503 (14) | 0.67189 (12) | 0.83172 (7) | 0.0180 (2) | |
C10 | 0.01759 (15) | 0.77488 (14) | 0.81086 (8) | 0.0229 (2) | |
H10A | −0.0707 | 0.7281 | 0.8113 | 0.028* | |
H10B | 0.0382 | 0.8425 | 0.7403 | 0.028* | |
C11A | −0.05515 (18) | 0.87065 (15) | 0.88579 (10) | 0.0221 (3) | 0.870 (4) |
H11A | 0.0139 | 0.9269 | 0.8901 | 0.027* | 0.870 (4) |
C12A | −0.21002 (18) | 0.88140 (15) | 0.94633 (10) | 0.0218 (3) | 0.870 (4) |
H12A | −0.2772 | 0.8236 | 0.9419 | 0.026* | 0.870 (4) |
C13A | −0.2880 (4) | 0.9771 (4) | 1.0211 (2) | 0.0282 (7) | 0.870 (4) |
H13A | −0.3312 | 0.9147 | 1.0874 | 0.042* | 0.870 (4) |
H13B | −0.3880 | 1.0691 | 0.9940 | 0.042* | 0.870 (4) |
H13C | −0.1958 | 1.0101 | 1.0308 | 0.042* | 0.870 (4) |
C11B | −0.1202 (11) | 0.8205 (9) | 0.9029 (6) | 0.015 (2)* | 0.130 (4) |
H11B | −0.1846 | 0.7520 | 0.9435 | 0.018* | 0.130 (4) |
C12B | −0.1540 (11) | 0.9477 (9) | 0.9284 (6) | 0.018 (2)* | 0.130 (4) |
H12B | −0.1012 | 1.0218 | 0.8819 | 0.022* | 0.130 (4) |
C13B | −0.267 (3) | 0.987 (3) | 1.0233 (14) | 0.015 (4)* | 0.130 (4) |
H13D | −0.3374 | 0.9172 | 1.0560 | 0.022* | 0.130 (4) |
H13E | −0.3476 | 1.0951 | 1.0050 | 0.022* | 0.130 (4) |
H13F | −0.1897 | 0.9748 | 1.0714 | 0.022* | 0.130 (4) |
C6-1 | 0.63857 (14) | 0.51980 (12) | 0.86514 (8) | 0.0193 (2) | |
C8-1 | 0.21905 (16) | 0.49369 (13) | 0.87965 (8) | 0.0230 (2) | |
H8-1 | 0.1289 | 0.4480 | 0.8932 | 0.028* | |
C5-1 | 0.46671 (14) | 0.52249 (12) | 0.86842 (8) | 0.0183 (2) | |
C20 | 0.11732 (15) | 0.20286 (13) | 0.69402 (8) | 0.0215 (2) | |
H20A | −0.0036 | 0.2258 | 0.7343 | 0.026* | |
H20B | 0.1973 | 0.1061 | 0.7357 | 0.026* | |
C21A | 0.10844 (17) | 0.17794 (14) | 0.59490 (9) | 0.0218 (3) | 0.934 (3) |
H21A | 0.0198 | 0.2537 | 0.5533 | 0.026* | 0.934 (3) |
C22A | 0.21845 (17) | 0.05548 (15) | 0.56322 (9) | 0.0238 (3) | 0.934 (3) |
H22A | 0.3056 | −0.0205 | 0.6058 | 0.029* | 0.934 (3) |
C23A | 0.2142 (4) | 0.0289 (3) | 0.4634 (2) | 0.0325 (6) | 0.934 (3) |
H23A | 0.1207 | 0.1167 | 0.4264 | 0.049* | 0.934 (3) |
H23B | 0.1884 | −0.0676 | 0.4786 | 0.049* | 0.934 (3) |
H23C | 0.3307 | 0.0203 | 0.4204 | 0.049* | 0.934 (3) |
C21B | 0.209 (2) | 0.1272 (18) | 0.6064 (11) | 0.015 (4)* | 0.066 (3) |
H21B | 0.3352 | 0.0771 | 0.5981 | 0.018* | 0.066 (3) |
C22B | 0.112 (2) | 0.1321 (17) | 0.5430 (11) | 0.015 (4)* | 0.066 (3) |
H22B | −0.0106 | 0.1928 | 0.5380 | 0.018* | 0.066 (3) |
C23B | 0.229 (5) | 0.026 (4) | 0.481 (3) | 0.021 (8)* | 0.066 (3) |
H23D | 0.1854 | 0.0602 | 0.4137 | 0.031* | 0.066 (3) |
H23E | 0.2261 | −0.0801 | 0.5169 | 0.031* | 0.066 (3) |
H23F | 0.3515 | 0.0260 | 0.4695 | 0.031* | 0.066 (3) |
C4-2 | 0.35605 (14) | 0.31944 (12) | 0.67688 (8) | 0.0183 (2) | |
C2-2 | 0.63962 (15) | 0.22142 (13) | 0.70213 (9) | 0.0240 (2) | |
H2-2 | 0.7401 | 0.1342 | 0.7261 | 0.029* | |
C6-2 | 0.52708 (15) | 0.48383 (12) | 0.63305 (8) | 0.0194 (2) | |
C5-2 | 0.36118 (14) | 0.47249 (12) | 0.63838 (8) | 0.0188 (2) | |
C8-2 | 0.09700 (15) | 0.48857 (13) | 0.63580 (9) | 0.0244 (2) | |
H8-2 | −0.0256 | 0.5292 | 0.6260 | 0.029* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl-1 | 0.02417 (14) | 0.02408 (14) | 0.02272 (13) | −0.00338 (10) | −0.00490 (10) | −0.00524 (10) |
Cl-2 | 0.03597 (16) | 0.02178 (14) | 0.02075 (13) | −0.01493 (11) | −0.00189 (10) | −0.00491 (10) |
N1-1 | 0.0223 (5) | 0.0252 (5) | 0.0193 (4) | −0.0112 (4) | −0.0031 (3) | −0.0061 (4) |
N3-1 | 0.0234 (5) | 0.0209 (4) | 0.0174 (4) | −0.0099 (4) | −0.0032 (3) | −0.0045 (3) |
N9-1 | 0.0194 (4) | 0.0244 (5) | 0.0193 (4) | −0.0103 (4) | −0.0013 (3) | −0.0077 (3) |
N7-1 | 0.0272 (5) | 0.0224 (5) | 0.0196 (4) | −0.0133 (4) | 0.0011 (4) | −0.0066 (4) |
N9-2 | 0.0189 (4) | 0.0207 (4) | 0.0199 (4) | −0.0057 (3) | −0.0028 (3) | −0.0063 (3) |
N3-2 | 0.0211 (4) | 0.0181 (4) | 0.0223 (4) | −0.0046 (4) | −0.0039 (3) | −0.0048 (3) |
N1-2 | 0.0213 (4) | 0.0238 (5) | 0.0229 (5) | −0.0082 (4) | −0.0017 (4) | −0.0074 (4) |
N7-2 | 0.0250 (5) | 0.0199 (5) | 0.0249 (5) | −0.0029 (4) | −0.0077 (4) | −0.0059 (4) |
C2-1 | 0.0259 (5) | 0.0226 (5) | 0.0202 (5) | −0.0128 (4) | −0.0037 (4) | −0.0045 (4) |
C4-1 | 0.0206 (5) | 0.0229 (5) | 0.0134 (4) | −0.0098 (4) | −0.0012 (4) | −0.0063 (4) |
C10 | 0.0191 (5) | 0.0302 (6) | 0.0210 (5) | −0.0089 (4) | −0.0039 (4) | −0.0075 (4) |
C11A | 0.0226 (7) | 0.0210 (6) | 0.0243 (6) | −0.0085 (5) | −0.0078 (5) | −0.0036 (5) |
C12A | 0.0236 (7) | 0.0205 (6) | 0.0226 (6) | −0.0086 (5) | −0.0066 (5) | −0.0037 (5) |
C13A | 0.0264 (11) | 0.0339 (12) | 0.0311 (11) | −0.0128 (9) | −0.0020 (7) | −0.0152 (7) |
C6-1 | 0.0216 (5) | 0.0220 (5) | 0.0143 (4) | −0.0068 (4) | −0.0027 (4) | −0.0056 (4) |
C8-1 | 0.0270 (6) | 0.0263 (6) | 0.0213 (5) | −0.0158 (5) | 0.0021 (4) | −0.0091 (4) |
C5-1 | 0.0229 (5) | 0.0198 (5) | 0.0138 (4) | −0.0094 (4) | −0.0004 (4) | −0.0056 (4) |
C20 | 0.0218 (5) | 0.0242 (5) | 0.0203 (5) | −0.0106 (4) | −0.0005 (4) | −0.0066 (4) |
C21A | 0.0210 (6) | 0.0247 (6) | 0.0205 (6) | −0.0097 (5) | −0.0039 (4) | −0.0039 (4) |
C22A | 0.0253 (6) | 0.0246 (6) | 0.0212 (6) | −0.0098 (5) | −0.0033 (5) | −0.0043 (5) |
C23A | 0.0420 (11) | 0.0391 (10) | 0.0225 (10) | −0.0165 (7) | −0.0021 (8) | −0.0141 (8) |
C4-2 | 0.0199 (5) | 0.0204 (5) | 0.0145 (4) | −0.0065 (4) | −0.0012 (4) | −0.0059 (4) |
C2-2 | 0.0215 (5) | 0.0204 (5) | 0.0277 (6) | −0.0046 (4) | −0.0050 (4) | −0.0056 (4) |
C6-2 | 0.0265 (5) | 0.0194 (5) | 0.0140 (4) | −0.0097 (4) | −0.0004 (4) | −0.0059 (4) |
C5-2 | 0.0227 (5) | 0.0177 (5) | 0.0149 (4) | −0.0048 (4) | −0.0026 (4) | −0.0054 (4) |
C8-2 | 0.0218 (5) | 0.0233 (5) | 0.0262 (5) | −0.0021 (4) | −0.0072 (4) | −0.0079 (4) |
Cl-1—C6-1 | 1.7302 (11) | C13A—H13C | 0.9800 |
Cl-2—C6-2 | 1.7325 (11) | C11B—C12B | 1.311 (11) |
N1-1—C6-1 | 1.3205 (14) | C11B—H11B | 0.9500 |
N1-1—C2-1 | 1.3483 (15) | C12B—C13B | 1.487 (15) |
N3-1—C2-1 | 1.3334 (14) | C12B—H12B | 0.9500 |
N3-1—C4-1 | 1.3338 (13) | C13B—H13D | 0.9800 |
N9-1—C4-1 | 1.3644 (13) | C13B—H13E | 0.9800 |
N9-1—C8-1 | 1.3711 (14) | C13B—H13F | 0.9800 |
N9-1—C10 | 1.4687 (14) | C6-1—C5-1 | 1.3856 (15) |
N7-1—C8-1 | 1.3130 (15) | C8-1—H8-1 | 0.9500 |
N7-1—C5-1 | 1.3847 (13) | C20—C21A | 1.5069 (15) |
N9-2—C4-2 | 1.3697 (14) | C20—C21B | 1.526 (15) |
N9-2—C8-2 | 1.3721 (14) | C20—H20A | 0.9900 |
N9-2—C20 | 1.4756 (14) | C20—H20B | 0.9900 |
N3-2—C4-2 | 1.3311 (14) | C21A—C22A | 1.3227 (18) |
N3-2—C2-2 | 1.3333 (15) | C21A—H21A | 0.9500 |
N1-2—C6-2 | 1.3195 (15) | C22A—C23A | 1.513 (3) |
N1-2—C2-2 | 1.3486 (15) | C22A—H22A | 0.9500 |
N7-2—C8-2 | 1.3123 (15) | C23A—H23A | 0.9800 |
N7-2—C5-2 | 1.3848 (14) | C23A—H23B | 0.9800 |
C2-1—H2-1 | 0.9500 | C23A—H23C | 0.9800 |
C4-1—C5-1 | 1.4035 (15) | C21B—C22B | 1.308 (15) |
C10—C11A | 1.4975 (17) | C21B—H21B | 0.9500 |
C10—C11B | 1.547 (8) | C22B—C23B | 1.475 (18) |
C10—H10A | 0.9900 | C22B—H22B | 0.9500 |
C10—H10B | 0.9900 | C23B—H23D | 0.9800 |
C11A—C12A | 1.323 (2) | C23B—H23E | 0.9800 |
C11A—H11A | 0.9500 | C23B—H23F | 0.9800 |
C12A—C13A | 1.494 (3) | C4-2—C5-2 | 1.4075 (15) |
C12A—H12A | 0.9500 | C2-2—H2-2 | 0.9500 |
C13A—H13A | 0.9800 | C6-2—C5-2 | 1.3857 (15) |
C13A—H13B | 0.9800 | C8-2—H8-2 | 0.9500 |
C6-1—N1-1—C2-1 | 117.58 (9) | N1-1—C6-1—C5-1 | 121.81 (10) |
C2-1—N3-1—C4-1 | 111.92 (9) | N1-1—C6-1—Cl-1 | 117.06 (8) |
C4-1—N9-1—C8-1 | 105.55 (9) | C5-1—C6-1—Cl-1 | 121.12 (8) |
C4-1—N9-1—C10 | 125.75 (9) | N7-1—C8-1—N9-1 | 114.96 (10) |
C8-1—N9-1—C10 | 128.65 (9) | N7-1—C8-1—H8-1 | 122.5 |
C8-1—N7-1—C5-1 | 103.03 (9) | N9-1—C8-1—H8-1 | 122.5 |
C4-2—N9-2—C8-2 | 105.39 (9) | N7-1—C5-1—C6-1 | 135.09 (10) |
C4-2—N9-2—C20 | 126.48 (9) | N7-1—C5-1—C4-1 | 110.75 (9) |
C8-2—N9-2—C20 | 127.49 (9) | C6-1—C5-1—C4-1 | 114.16 (9) |
C4-2—N3-2—C2-2 | 111.78 (9) | N9-2—C20—C21A | 111.69 (9) |
C6-2—N1-2—C2-2 | 116.99 (10) | N9-2—C20—C21B | 106.9 (6) |
C8-2—N7-2—C5-2 | 103.20 (9) | N9-2—C20—H20A | 109.3 |
N3-1—C2-1—N1-1 | 127.67 (10) | C21A—C20—H20A | 109.3 |
N3-1—C2-1—H2-1 | 116.2 | C21B—C20—H20A | 135.2 |
N1-1—C2-1—H2-1 | 116.2 | N9-2—C20—H20B | 109.3 |
N3-1—C4-1—N9-1 | 127.49 (10) | C21A—C20—H20B | 109.3 |
N3-1—C4-1—C5-1 | 126.81 (10) | C21B—C20—H20B | 83.6 |
N9-1—C4-1—C5-1 | 105.70 (9) | H20A—C20—H20B | 107.9 |
N9-1—C10—C11A | 110.39 (9) | C22A—C21A—C20 | 123.02 (11) |
N9-1—C10—C11B | 115.3 (3) | C22A—C21A—H21A | 118.5 |
N9-1—C10—H10A | 109.6 | C20—C21A—H21A | 118.5 |
C11A—C10—H10A | 109.6 | C21A—C22A—C23A | 124.07 (14) |
C11B—C10—H10A | 80.2 | C21A—C22A—H22A | 118.0 |
N9-1—C10—H10B | 109.6 | C23A—C22A—H22A | 118.0 |
C11A—C10—H10B | 109.6 | C22B—C21B—C20 | 119.2 (14) |
C11B—C10—H10B | 128.2 | C22B—C21B—H21B | 120.4 |
H10A—C10—H10B | 108.1 | C20—C21B—H21B | 120.4 |
C12A—C11A—C10 | 123.78 (12) | C21B—C22B—C23B | 107.1 (19) |
C12A—C11A—H11A | 118.1 | C21B—C22B—H22B | 126.5 |
C10—C11A—H11A | 118.1 | C23B—C22B—H22B | 126.5 |
C11A—C12A—C13A | 125.33 (17) | N3-2—C4-2—N9-2 | 127.88 (10) |
C11A—C12A—H12A | 117.3 | N3-2—C4-2—C5-2 | 126.46 (10) |
C13A—C12A—H12A | 117.3 | N9-2—C4-2—C5-2 | 105.66 (9) |
C12B—C11B—C10 | 124.2 (8) | N3-2—C2-2—N1-2 | 128.37 (10) |
C12B—C11B—H11B | 117.9 | N3-2—C2-2—H2-2 | 115.8 |
C10—C11B—H11B | 117.9 | N1-2—C2-2—H2-2 | 115.8 |
C11B—C12B—C13B | 126.3 (11) | N1-2—C6-2—C5-2 | 121.91 (10) |
C11B—C12B—H12B | 116.9 | N1-2—C6-2—Cl-2 | 116.70 (8) |
C13B—C12B—H12B | 116.9 | C5-2—C6-2—Cl-2 | 121.39 (8) |
C12B—C13B—H13D | 109.5 | N7-2—C5-2—C6-2 | 134.92 (10) |
C12B—C13B—H13E | 109.5 | N7-2—C5-2—C4-2 | 110.64 (9) |
H13D—C13B—H13E | 109.5 | C6-2—C5-2—C4-2 | 114.43 (9) |
C12B—C13B—H13F | 109.5 | N7-2—C8-2—N9-2 | 115.10 (10) |
H13D—C13B—H13F | 109.5 | N7-2—C8-2—H8-2 | 122.4 |
H13E—C13B—H13F | 109.5 | N9-2—C8-2—H8-2 | 122.4 |
Experimental details
Crystal data | |
Chemical formula | C9H9ClN4 |
Mr | 208.65 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 8.1818 (11), 9.7103 (13), 13.9435 (19) |
α, β, γ (°) | 69.642 (1), 75.448 (1), 67.032 (1) |
V (Å3) | 947.6 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.37 |
Crystal size (mm) | 1.13 × 0.35 × 0.22 |
Data collection | |
Diffractometer | Bruker APEXII CCD diffractometer |
Absorption correction | Numerical (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.683, 0.924 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10801, 4428, 4103 |
Rint | 0.017 |
(sin θ/λ)max (Å−1) | 0.677 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.070, 1.04 |
No. of reflections | 4428 |
No. of parameters | 283 |
No. of restraints | 4 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.34, −0.30 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), DIAMOND (Brandenburg, 2004) and ChemBioDraw Ultra (CambridgeSoft, 2009), publCIF (Westrip, 2010).
Acknowledgements
We acknowledge the support from the Norwegian Research Council (KOSK II, project 184929 and RENERGI, project 190980) and from the Department of Chemistry, UiO. We also acknowledge Dr David S. Wragg for invaluable assistance with the refinement.
References
Altomare, A., Cascarano, G., Giacovazzo, C. & Guagliardi, A. (1993). J. Appl. Cryst. 26, 343–350. CrossRef Web of Science IUCr Journals Google Scholar
Brandenburg, K. (2004). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
Bruker (2005). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
CambridgeSoft (2009). ChemBioDraw Ultra. CambridgeSoft Corporation, Cambridge, Massachusetts, USA. Google Scholar
Kania, J. & Gundersen, L.-L. (2013). Eur. J. Org. Chem. pp. 2008–2019. Web of Science CrossRef Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound is an N-allyl substituted purine intended as a starting material for investigation of the double bond rearragement in N-allylic systems. (E)-9-(but-2-en-1-yl)-6-chloro-9H-purine was recrystallized from a mixture of E/Z-isomers in order to obtain the pure E-isomer for the following rearrangement study. The structure and purity of this compound was originally determined by NMR. Further structure elucidation by SXRD supports the conclusions in our previous report (compound 14a, Kania et al., 2013).
The structure of the title compound, C9H9ClN4, has a triclinic P -1 symmetry. The asymmetric unit consists of two molecules of the title compound, with the full content of the unit cell generated by symmetry operations. The molecule has a planar bicyclic motif with an N-allylic chain oriented out of the plane described by the bicyclic main body. During the initial refinement of the structure it became apparent that the N-allylic chain is slightly disordered, with two possible spacial orientations. By using the PART instruction in SHELXL, the two possible orientations of the chain (A and B) were refined individually for the two molecules that form the asymmetric unit (residue 1 and 2). Orientation A is clearly preferred in the solid state, with the minor orientation B present in about 13% and 6.6% abundance for residue 1 and 2 respectively. The limited occupancy of the minor components prompted the use of restraints to achieve satisfactory refinement of the structure. We employed the SADI instruction in SHELXL and restrained the C10, C11B—C13B and C20, C21B—C23B bond distances in the minor components to be the same as the corresponding distances in the major components (C10, C11A—C13A and C20, C21A—C23A). This ensured realistic bond distances in the chains. Furthermore, C11B—C13B and C21B—C23B were refined isotropically since anisotropic refinement did not give realistic thermal parameters due to the low occupancy of the sites.