organic compounds
Methyl 3-[(chloromethoxy)carbonyloxy]-7-hydroxycholan-24-oate
aShanghai Institute of Pharmaceutical Industry, Shanghai 200040, People's Republic of China, and bBeijing Chao-Yang Hospital Affiliated with Beijing Capital Medical University, Beijing 100020, People's Republic of China
*Correspondence e-mail: liuheliuhe@126.com
The title compound, C27H43ClO6, is a derivative of ursodeoxycholic acid, in which the OH group at the 3-position is substituted by a chloromethoxycarbonyloxy substituent and the carboxylic acid group at the 24-position is methylated. The A and B rings are cis-fused, while all other rings are trans-fused. In the crystal, two adjacent molecules located along the b-axis direction are interlocked head-to-tail due to weak C—H⋯O hydrogen bonds. Therefore each molecule is linked to four neighbouring molecules by four C—H⋯O hydrogen bonds, with the OH group at the 7-position and the carbonyl O atom of the ester group acting as the acceptor sites.
Related literature
For the synthesis of the title compound, see: von Geldern et al. (2004); For similar structures, see: Kannan et al. (2001); Lindley & Carey et al. (1987).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S160053681301725X/im2434sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681301725X/im2434Isup2.hkl
Chloromethyl-chloroformate was slowly added to a solution of methyl 3,7- dihydroxycholan-24-oate and anhydrous pyridine in anhydrous CH2Cl2 under nitrogen at 273 K. The resulting mixture was allowed to warm to room temperature, was then stirred for 7 h and then extracted with CH2Cl2. The organic extract was dried over Na2SO4, filtered and evaporated under reduced pressure. The residue was washed with diethyl ether to afford the title compound as a white solid (>95% yield). No further purification was necessary. Crystals appropriate for X-ray diffraction data collection were obtained by slow evaporation of a saturated DMF/H2O solution at room temperature.
The H atom of the OH-group in 7-position was located from the difference Fourier map and restraind to ride on its parent O atom. All other H atoms were placed in geometically idealized positions and constrained to ride on their parent atoms with C—H distances of 0.93 Å (0.96 for methyl group) and Uiso(H) = 1.2 (1.5 for CH3)Ueq(C) for CH.
The title compound, (I) (Fig. 1), methyl 3-((chloromethoxy)carbonyloxy-7- hydroxycholan-24-oate was synthesized according to a general literature procedure (von Geldern et al., 2004).
Bile acid is a widely studied and used pharmaceutical molecule (Kannan et al., 2001). It can be used to treat jaundice, gallstones (Lindley & Carey, 1987) etc. Ursodeoxycholic acid (UDCA) and chenodeoxycholic acid (CDCA) are two most famous analogues of bile acid. Here we report the
of a UDCA derivative.In the α and 17-β side chains stretched as the arms. In the crystal packing (Fig. 2), two adjacent molecules located along the b axis are interlocked head to tail due to weak hydrogen bondings (C11—H11B···O2 and C27—H27B···O5, Table 1). Therefore each molecule of the title compound is linked to four neighboring molecules by four C—H···O hydrogen bonds.
rings A and B are cis fused while rings B/C/D are trans fused. The dihedral angles of A/B, B/C, C/D are 62.89 (8)°, 2.70 (14)° and 5.05 (17)°, respectively. So the skeleton of the title compound exhibits a V shape with the 3-For the synthesis of the title compound, see: von Geldern et al. (2004); For similar structures, see: Kannan et al. (2001); Lindley & Carey et al. (1987).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: publCIF (Westrip, 2010).C27H43ClO6 | F(000) = 1080 |
Mr = 499.06 | Dx = 1.251 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2869 reflections |
a = 7.8896 (13) Å | θ = 2.3–20.2° |
b = 10.9493 (17) Å | µ = 0.18 mm−1 |
c = 30.683 (5) Å | T = 294 K |
V = 2650.6 (7) Å3 | Block, colorless |
Z = 4 | 0.24 × 0.20 × 0.12 mm |
Bruker APEXII CCD diffractometer | 3191 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.054 |
Graphite monochromator | θmax = 26.4°, θmin = 2.0° |
φ and ω scans | h = −9→9 |
15292 measured reflections | k = −13→13 |
5411 independent reflections | l = −38→24 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.118 | w = 1/[σ2(Fo2) + (0.0543P)2 + 0.1843P] where P = (Fo2 + 2Fc2)/3 |
S = 0.94 | (Δ/σ)max = 0.006 |
5411 reflections | Δρmax = 0.15 e Å−3 |
311 parameters | Δρmin = −0.19 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 2309 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.10 (9) |
C27H43ClO6 | V = 2650.6 (7) Å3 |
Mr = 499.06 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.8896 (13) Å | µ = 0.18 mm−1 |
b = 10.9493 (17) Å | T = 294 K |
c = 30.683 (5) Å | 0.24 × 0.20 × 0.12 mm |
Bruker APEXII CCD diffractometer | 3191 reflections with I > 2σ(I) |
15292 measured reflections | Rint = 0.054 |
5411 independent reflections |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.118 | Δρmax = 0.15 e Å−3 |
S = 0.94 | Δρmin = −0.19 e Å−3 |
5411 reflections | Absolute structure: Flack (1983), 2309 Friedel pairs |
311 parameters | Absolute structure parameter: −0.10 (9) |
0 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.32107 (15) | 0.26524 (10) | 0.18096 (3) | 0.0899 (4) | |
O1 | 0.2665 (3) | 0.37444 (17) | 0.31505 (6) | 0.0499 (5) | |
O2 | −0.3225 (2) | 0.4663 (2) | 0.46546 (7) | 0.0736 (7) | |
H2 | −0.3270 | 0.4100 | 0.4831 | 0.110* | |
O3 | 0.1100 (3) | 0.4228 (2) | 0.25576 (7) | 0.0717 (7) | |
O4 | 0.2450 (3) | 0.24219 (18) | 0.26367 (6) | 0.0657 (7) | |
O5 | 0.1643 (4) | 0.0724 (2) | 0.72053 (8) | 0.0823 (8) | |
O6 | 0.2415 (3) | 0.18771 (19) | 0.77669 (7) | 0.0623 (6) | |
C1 | 0.3092 (4) | 0.6337 (2) | 0.39347 (9) | 0.0435 (7) | |
H1A | 0.3016 | 0.7011 | 0.3730 | 0.052* | |
H1B | 0.3992 | 0.6527 | 0.4139 | 0.052* | |
C2 | 0.3587 (3) | 0.5194 (2) | 0.36840 (9) | 0.0408 (7) | |
H2A | 0.4639 | 0.5334 | 0.3528 | 0.049* | |
H2B | 0.3758 | 0.4521 | 0.3885 | 0.049* | |
C3 | 0.2202 (3) | 0.4882 (3) | 0.33670 (9) | 0.0416 (7) | |
H3 | 0.2097 | 0.5535 | 0.3150 | 0.050* | |
C4 | 0.0533 (3) | 0.4714 (3) | 0.35987 (9) | 0.0439 (7) | |
H4A | 0.0613 | 0.4012 | 0.3791 | 0.053* | |
H4B | −0.0342 | 0.4545 | 0.3385 | 0.053* | |
C5 | 0.0019 (3) | 0.5833 (3) | 0.38662 (10) | 0.0415 (7) | |
H5 | −0.0158 | 0.6502 | 0.3659 | 0.050* | |
C6 | −0.1667 (4) | 0.5618 (3) | 0.40940 (9) | 0.0508 (8) | |
H6A | −0.2474 | 0.5302 | 0.3884 | 0.061* | |
H6B | −0.2097 | 0.6394 | 0.4199 | 0.061* | |
C7 | −0.1550 (3) | 0.4733 (3) | 0.44751 (9) | 0.0462 (7) | |
H7 | −0.1227 | 0.3926 | 0.4365 | 0.055* | |
C8 | −0.0229 (3) | 0.5153 (3) | 0.48090 (9) | 0.0351 (6) | |
H8 | −0.0600 | 0.5940 | 0.4927 | 0.042* | |
C9 | 0.1503 (3) | 0.5350 (2) | 0.45808 (8) | 0.0342 (6) | |
H9 | 0.1819 | 0.4558 | 0.4457 | 0.041* | |
C10 | 0.1415 (3) | 0.6260 (2) | 0.41883 (9) | 0.0361 (6) | |
C11 | 0.2904 (4) | 0.5677 (3) | 0.49034 (9) | 0.0459 (8) | |
H11A | 0.2699 | 0.6494 | 0.5014 | 0.055* | |
H11B | 0.3979 | 0.5688 | 0.4750 | 0.055* | |
C12 | 0.3042 (3) | 0.4796 (3) | 0.52914 (9) | 0.0442 (7) | |
H12A | 0.3393 | 0.3998 | 0.5188 | 0.053* | |
H12B | 0.3897 | 0.5091 | 0.5492 | 0.053* | |
C13 | 0.1340 (3) | 0.4681 (2) | 0.55303 (9) | 0.0359 (7) | |
C14 | −0.0003 (3) | 0.4264 (3) | 0.51936 (9) | 0.0380 (7) | |
H14 | 0.0433 | 0.3504 | 0.5067 | 0.046* | |
C15 | −0.1512 (4) | 0.3896 (3) | 0.54761 (10) | 0.0517 (8) | |
H15A | −0.2190 | 0.3277 | 0.5332 | 0.062* | |
H15B | −0.2223 | 0.4597 | 0.5539 | 0.062* | |
C16 | −0.0713 (4) | 0.3389 (3) | 0.58960 (10) | 0.0576 (9) | |
H16A | −0.0917 | 0.2517 | 0.5918 | 0.069* | |
H16B | −0.1206 | 0.3784 | 0.6149 | 0.069* | |
C17 | 0.1219 (4) | 0.3648 (3) | 0.58750 (9) | 0.0426 (7) | |
H17 | 0.1754 | 0.2924 | 0.5748 | 0.051* | |
C18 | 0.1007 (4) | 0.7560 (3) | 0.43452 (10) | 0.0541 (8) | |
H18A | 0.1943 | 0.7871 | 0.4511 | 0.081* | |
H18B | 0.0010 | 0.7543 | 0.4525 | 0.081* | |
H18C | 0.0812 | 0.8078 | 0.4098 | 0.081* | |
C19 | 0.0859 (4) | 0.5906 (2) | 0.57389 (9) | 0.0462 (8) | |
H19A | 0.0679 | 0.6503 | 0.5515 | 0.069* | |
H19B | 0.1758 | 0.6172 | 0.5927 | 0.069* | |
H19C | −0.0162 | 0.5809 | 0.5906 | 0.069* | |
C20 | 0.2012 (4) | 0.3833 (3) | 0.63295 (9) | 0.0481 (8) | |
H20 | 0.1423 | 0.4517 | 0.6469 | 0.058* | |
C21 | 0.1710 (4) | 0.2695 (3) | 0.66091 (9) | 0.0549 (8) | |
H21A | 0.0532 | 0.2455 | 0.6580 | 0.066* | |
H21B | 0.2399 | 0.2034 | 0.6495 | 0.066* | |
C22 | 0.2112 (5) | 0.2856 (3) | 0.70923 (10) | 0.0659 (10) | |
H22A | 0.3244 | 0.3192 | 0.7121 | 0.079* | |
H22B | 0.1325 | 0.3441 | 0.7216 | 0.079* | |
C23 | 0.2014 (4) | 0.1701 (3) | 0.73474 (10) | 0.0535 (8) | |
C24 | 0.2399 (5) | 0.0802 (3) | 0.80385 (11) | 0.0825 (12) | |
H24A | 0.1299 | 0.0429 | 0.8027 | 0.124* | |
H24B | 0.2653 | 0.1028 | 0.8334 | 0.124* | |
H24C | 0.3236 | 0.0234 | 0.7936 | 0.124* | |
C25 | 0.3888 (4) | 0.4142 (4) | 0.63165 (12) | 0.0798 (12) | |
H25A | 0.4474 | 0.3547 | 0.6143 | 0.120* | |
H25B | 0.4336 | 0.4135 | 0.6607 | 0.120* | |
H25C | 0.4038 | 0.4938 | 0.6191 | 0.120* | |
C26 | 0.1968 (4) | 0.3558 (3) | 0.27627 (10) | 0.0494 (8) | |
C27 | 0.1876 (5) | 0.2065 (3) | 0.22191 (9) | 0.0642 (10) | |
H27A | 0.0731 | 0.2362 | 0.2174 | 0.077* | |
H27B | 0.1854 | 0.1181 | 0.2201 | 0.077* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.1037 (8) | 0.1095 (8) | 0.0566 (5) | −0.0270 (6) | 0.0159 (6) | −0.0190 (5) |
O1 | 0.0637 (13) | 0.0502 (12) | 0.0358 (11) | 0.0123 (10) | −0.0067 (11) | −0.0087 (10) |
O2 | 0.0304 (11) | 0.126 (2) | 0.0641 (15) | −0.0057 (12) | 0.0029 (12) | 0.0148 (14) |
O3 | 0.0891 (18) | 0.0694 (15) | 0.0566 (14) | 0.0211 (14) | −0.0233 (15) | −0.0142 (12) |
O4 | 0.1050 (19) | 0.0487 (12) | 0.0433 (12) | 0.0106 (13) | −0.0066 (13) | −0.0096 (10) |
O5 | 0.124 (2) | 0.0533 (14) | 0.0699 (16) | −0.0114 (15) | −0.0356 (17) | 0.0132 (13) |
O6 | 0.0814 (17) | 0.0611 (13) | 0.0445 (12) | 0.0078 (12) | 0.0031 (13) | 0.0078 (11) |
C1 | 0.0495 (19) | 0.0389 (16) | 0.0421 (16) | −0.0033 (14) | −0.0036 (15) | −0.0019 (14) |
C2 | 0.0362 (15) | 0.0453 (16) | 0.0410 (16) | −0.0001 (14) | 0.0027 (14) | −0.0016 (14) |
C3 | 0.0423 (16) | 0.0417 (16) | 0.0407 (16) | 0.0044 (14) | −0.0009 (15) | −0.0064 (13) |
C4 | 0.0414 (17) | 0.0485 (17) | 0.0417 (18) | −0.0028 (14) | −0.0091 (15) | −0.0070 (15) |
C5 | 0.0396 (17) | 0.0435 (17) | 0.0414 (17) | 0.0053 (14) | −0.0066 (15) | 0.0038 (15) |
C6 | 0.0355 (16) | 0.066 (2) | 0.0505 (18) | 0.0099 (15) | −0.0055 (16) | −0.0017 (16) |
C7 | 0.0289 (15) | 0.063 (2) | 0.0468 (18) | 0.0007 (15) | −0.0016 (15) | −0.0029 (16) |
C8 | 0.0299 (14) | 0.0360 (15) | 0.0395 (16) | 0.0043 (12) | −0.0013 (13) | −0.0072 (13) |
C9 | 0.0304 (14) | 0.0336 (15) | 0.0387 (15) | 0.0060 (12) | −0.0013 (13) | −0.0043 (12) |
C10 | 0.0365 (15) | 0.0327 (15) | 0.0392 (15) | 0.0028 (13) | 0.0012 (14) | −0.0045 (13) |
C11 | 0.0340 (16) | 0.0604 (19) | 0.0434 (17) | −0.0018 (15) | −0.0007 (15) | −0.0012 (15) |
C12 | 0.0372 (16) | 0.0516 (17) | 0.0438 (17) | 0.0012 (14) | −0.0047 (15) | −0.0025 (14) |
C13 | 0.0360 (15) | 0.0339 (15) | 0.0379 (16) | 0.0008 (13) | −0.0009 (14) | −0.0016 (13) |
C14 | 0.0327 (16) | 0.0367 (15) | 0.0444 (17) | 0.0038 (13) | −0.0021 (15) | −0.0075 (14) |
C15 | 0.0417 (17) | 0.058 (2) | 0.0554 (19) | −0.0081 (15) | −0.0026 (17) | 0.0066 (16) |
C16 | 0.0531 (19) | 0.063 (2) | 0.057 (2) | −0.0165 (16) | −0.0101 (18) | 0.0185 (18) |
C17 | 0.0471 (17) | 0.0352 (16) | 0.0455 (17) | 0.0026 (13) | −0.0017 (16) | −0.0015 (14) |
C18 | 0.065 (2) | 0.0400 (17) | 0.0569 (19) | 0.0126 (16) | −0.0005 (18) | −0.0009 (15) |
C19 | 0.0553 (19) | 0.0382 (17) | 0.0452 (18) | 0.0000 (15) | 0.0015 (16) | −0.0002 (14) |
C20 | 0.0547 (19) | 0.0418 (16) | 0.0478 (18) | −0.0083 (15) | −0.0081 (17) | 0.0067 (14) |
C21 | 0.059 (2) | 0.0509 (19) | 0.0547 (19) | −0.0017 (16) | −0.0068 (18) | 0.0086 (15) |
C22 | 0.096 (3) | 0.050 (2) | 0.0516 (19) | −0.0089 (19) | −0.014 (2) | 0.0100 (16) |
C23 | 0.055 (2) | 0.051 (2) | 0.054 (2) | 0.0046 (17) | −0.0109 (18) | 0.0041 (17) |
C24 | 0.121 (3) | 0.072 (2) | 0.054 (2) | 0.017 (2) | 0.002 (2) | 0.0246 (19) |
C25 | 0.069 (2) | 0.105 (3) | 0.065 (2) | −0.031 (2) | −0.023 (2) | 0.026 (2) |
C26 | 0.058 (2) | 0.049 (2) | 0.0415 (18) | 0.0017 (17) | 0.0030 (18) | −0.0060 (16) |
C27 | 0.091 (3) | 0.060 (2) | 0.0418 (18) | −0.0061 (19) | 0.000 (2) | −0.0203 (16) |
Cl1—C27 | 1.761 (3) | C11—H11B | 0.9700 |
O1—C26 | 1.327 (3) | C12—C13 | 1.535 (4) |
O1—C3 | 1.458 (3) | C12—H12A | 0.9700 |
O2—C7 | 1.433 (3) | C12—H12B | 0.9700 |
O2—H2 | 0.8200 | C13—C19 | 1.534 (4) |
O3—C26 | 1.185 (4) | C13—C14 | 1.549 (4) |
O4—C26 | 1.357 (3) | C13—C17 | 1.551 (4) |
O4—C27 | 1.414 (3) | C14—C15 | 1.526 (4) |
O5—C23 | 1.191 (4) | C14—H14 | 0.9800 |
O6—C23 | 1.340 (4) | C15—C16 | 1.538 (4) |
O6—C24 | 1.442 (3) | C15—H15A | 0.9700 |
C1—C2 | 1.520 (4) | C15—H15B | 0.9700 |
C1—C10 | 1.537 (4) | C16—C17 | 1.552 (4) |
C1—H1A | 0.9700 | C16—H16A | 0.9700 |
C1—H1B | 0.9700 | C16—H16B | 0.9700 |
C2—C3 | 1.502 (3) | C17—C20 | 1.542 (4) |
C2—H2A | 0.9700 | C17—H17 | 0.9800 |
C2—H2B | 0.9700 | C18—H18A | 0.9600 |
C3—C4 | 1.508 (4) | C18—H18B | 0.9600 |
C3—H3 | 0.9800 | C18—H18C | 0.9600 |
C4—C5 | 1.530 (4) | C19—H19A | 0.9600 |
C4—H4A | 0.9700 | C19—H19B | 0.9600 |
C4—H4B | 0.9700 | C19—H19C | 0.9600 |
C5—C6 | 1.521 (4) | C20—C25 | 1.519 (4) |
C5—C10 | 1.552 (4) | C20—C21 | 1.531 (4) |
C5—H5 | 0.9800 | C20—H20 | 0.9800 |
C6—C7 | 1.522 (4) | C21—C22 | 1.526 (4) |
C6—H6A | 0.9700 | C21—H21A | 0.9700 |
C6—H6B | 0.9700 | C21—H21B | 0.9700 |
C7—C8 | 1.533 (4) | C22—C23 | 1.489 (4) |
C7—H7 | 0.9800 | C22—H22A | 0.9700 |
C8—C14 | 1.540 (4) | C22—H22B | 0.9700 |
C8—C9 | 1.550 (4) | C24—H24A | 0.9600 |
C8—H8 | 0.9800 | C24—H24B | 0.9600 |
C9—C11 | 1.526 (4) | C24—H24C | 0.9600 |
C9—C10 | 1.564 (4) | C25—H25A | 0.9600 |
C9—H9 | 0.9800 | C25—H25B | 0.9600 |
C10—C18 | 1.537 (4) | C25—H25C | 0.9600 |
C11—C12 | 1.536 (4) | C27—H27A | 0.9700 |
C11—H11A | 0.9700 | C27—H27B | 0.9700 |
C26—O1—C3 | 115.8 (2) | C12—C13—C17 | 116.1 (2) |
C7—O2—H2 | 109.5 | C14—C13—C17 | 101.4 (2) |
C26—O4—C27 | 114.9 (3) | C15—C14—C8 | 120.8 (2) |
C23—O6—C24 | 115.8 (3) | C15—C14—C13 | 103.4 (2) |
C2—C1—C10 | 115.6 (2) | C8—C14—C13 | 113.8 (2) |
C2—C1—H1A | 108.4 | C15—C14—H14 | 105.9 |
C10—C1—H1A | 108.4 | C8—C14—H14 | 105.9 |
C2—C1—H1B | 108.4 | C13—C14—H14 | 105.9 |
C10—C1—H1B | 108.4 | C14—C15—C16 | 104.6 (2) |
H1A—C1—H1B | 107.4 | C14—C15—H15A | 110.8 |
C3—C2—C1 | 109.2 (2) | C16—C15—H15A | 110.8 |
C3—C2—H2A | 109.9 | C14—C15—H15B | 110.8 |
C1—C2—H2A | 109.9 | C16—C15—H15B | 110.8 |
C3—C2—H2B | 109.9 | H15A—C15—H15B | 108.9 |
C1—C2—H2B | 109.9 | C15—C16—C17 | 107.5 (2) |
H2A—C2—H2B | 108.3 | C15—C16—H16A | 110.2 |
O1—C3—C2 | 107.9 (2) | C17—C16—H16A | 110.2 |
O1—C3—C4 | 109.2 (2) | C15—C16—H16B | 110.2 |
C2—C3—C4 | 111.0 (2) | C17—C16—H16B | 110.2 |
O1—C3—H3 | 109.6 | H16A—C16—H16B | 108.5 |
C2—C3—H3 | 109.6 | C20—C17—C13 | 119.8 (2) |
C4—C3—H3 | 109.6 | C20—C17—C16 | 112.6 (2) |
C3—C4—C5 | 112.7 (2) | C13—C17—C16 | 102.8 (2) |
C3—C4—H4A | 109.0 | C20—C17—H17 | 107.0 |
C5—C4—H4A | 109.0 | C13—C17—H17 | 107.0 |
C3—C4—H4B | 109.0 | C16—C17—H17 | 107.0 |
C5—C4—H4B | 109.0 | C10—C18—H18A | 109.5 |
H4A—C4—H4B | 107.8 | C10—C18—H18B | 109.5 |
C6—C5—C4 | 110.8 (2) | H18A—C18—H18B | 109.5 |
C6—C5—C10 | 112.0 (2) | C10—C18—H18C | 109.5 |
C4—C5—C10 | 113.3 (2) | H18A—C18—H18C | 109.5 |
C6—C5—H5 | 106.8 | H18B—C18—H18C | 109.5 |
C4—C5—H5 | 106.8 | C13—C19—H19A | 109.5 |
C10—C5—H5 | 106.8 | C13—C19—H19B | 109.5 |
C5—C6—C7 | 113.5 (2) | H19A—C19—H19B | 109.5 |
C5—C6—H6A | 108.9 | C13—C19—H19C | 109.5 |
C7—C6—H6A | 108.9 | H19A—C19—H19C | 109.5 |
C5—C6—H6B | 108.9 | H19B—C19—H19C | 109.5 |
C7—C6—H6B | 108.9 | C25—C20—C21 | 110.3 (3) |
H6A—C6—H6B | 107.7 | C25—C20—C17 | 113.6 (3) |
O2—C7—C6 | 105.9 (2) | C21—C20—C17 | 109.7 (2) |
O2—C7—C8 | 112.7 (2) | C25—C20—H20 | 107.7 |
C6—C7—C8 | 111.3 (2) | C21—C20—H20 | 107.7 |
O2—C7—H7 | 108.9 | C17—C20—H20 | 107.7 |
C6—C7—H7 | 108.9 | C22—C21—C20 | 114.7 (2) |
C8—C7—H7 | 108.9 | C22—C21—H21A | 108.6 |
C7—C8—C14 | 113.6 (2) | C20—C21—H21A | 108.6 |
C7—C8—C9 | 109.8 (2) | C22—C21—H21B | 108.6 |
C14—C8—C9 | 109.4 (2) | C20—C21—H21B | 108.6 |
C7—C8—H8 | 107.9 | H21A—C21—H21B | 107.6 |
C14—C8—H8 | 107.9 | C23—C22—C21 | 113.7 (3) |
C9—C8—H8 | 107.9 | C23—C22—H22A | 108.8 |
C11—C9—C8 | 112.2 (2) | C21—C22—H22A | 108.8 |
C11—C9—C10 | 112.5 (2) | C23—C22—H22B | 108.8 |
C8—C9—C10 | 113.4 (2) | C21—C22—H22B | 108.8 |
C11—C9—H9 | 106.0 | H22A—C22—H22B | 107.7 |
C8—C9—H9 | 106.0 | O5—C23—O6 | 122.6 (3) |
C10—C9—H9 | 106.0 | O5—C23—C22 | 125.6 (3) |
C18—C10—C1 | 106.7 (2) | O6—C23—C22 | 111.7 (3) |
C18—C10—C5 | 109.3 (2) | O6—C24—H24A | 109.5 |
C1—C10—C5 | 107.8 (2) | O6—C24—H24B | 109.5 |
C18—C10—C9 | 111.0 (2) | H24A—C24—H24B | 109.5 |
C1—C10—C9 | 112.7 (2) | O6—C24—H24C | 109.5 |
C5—C10—C9 | 109.3 (2) | H24A—C24—H24C | 109.5 |
C9—C11—C12 | 114.0 (2) | H24B—C24—H24C | 109.5 |
C9—C11—H11A | 108.7 | C20—C25—H25A | 109.5 |
C12—C11—H11A | 108.7 | C20—C25—H25B | 109.5 |
C9—C11—H11B | 108.7 | H25A—C25—H25B | 109.5 |
C12—C11—H11B | 108.7 | C20—C25—H25C | 109.5 |
H11A—C11—H11B | 107.6 | H25A—C25—H25C | 109.5 |
C13—C12—C11 | 111.1 (2) | H25B—C25—H25C | 109.5 |
C13—C12—H12A | 109.4 | O3—C26—O1 | 128.4 (3) |
C11—C12—H12A | 109.4 | O3—C26—O4 | 125.3 (3) |
C13—C12—H12B | 109.4 | O1—C26—O4 | 106.3 (3) |
C11—C12—H12B | 109.4 | O4—C27—Cl1 | 110.7 (2) |
H12A—C12—H12B | 108.0 | O4—C27—H27A | 109.5 |
C19—C13—C12 | 110.1 (2) | Cl1—C27—H27A | 109.5 |
C19—C13—C14 | 111.5 (2) | O4—C27—H27B | 109.5 |
C12—C13—C14 | 107.7 (2) | Cl1—C27—H27B | 109.5 |
C19—C13—C17 | 109.7 (2) | H27A—C27—H27B | 108.1 |
C10—C1—C2—C3 | 57.9 (3) | C11—C12—C13—C14 | 56.6 (3) |
C26—O1—C3—C2 | −156.1 (2) | C11—C12—C13—C17 | 169.4 (2) |
C26—O1—C3—C4 | 83.2 (3) | C7—C8—C14—C15 | −56.4 (3) |
C1—C2—C3—O1 | −176.6 (2) | C9—C8—C14—C15 | −179.6 (2) |
C1—C2—C3—C4 | −57.1 (3) | C7—C8—C14—C13 | 179.6 (2) |
O1—C3—C4—C5 | 175.3 (2) | C9—C8—C14—C13 | 56.4 (3) |
C2—C3—C4—C5 | 56.5 (3) | C19—C13—C14—C15 | −71.7 (3) |
C3—C4—C5—C6 | −179.9 (2) | C12—C13—C14—C15 | 167.4 (2) |
C3—C4—C5—C10 | −53.1 (3) | C17—C13—C14—C15 | 45.0 (3) |
C4—C5—C6—C7 | 72.7 (3) | C19—C13—C14—C8 | 61.2 (3) |
C10—C5—C6—C7 | −54.9 (3) | C12—C13—C14—C8 | −59.7 (3) |
C5—C6—C7—O2 | 178.7 (2) | C17—C13—C14—C8 | 177.9 (2) |
C5—C6—C7—C8 | 55.9 (3) | C8—C14—C15—C16 | −161.5 (3) |
O2—C7—C8—C14 | 63.5 (3) | C13—C14—C15—C16 | −32.8 (3) |
C6—C7—C8—C14 | −177.7 (2) | C14—C15—C16—C17 | 8.1 (3) |
O2—C7—C8—C9 | −173.5 (2) | C19—C13—C17—C20 | −46.8 (3) |
C6—C7—C8—C9 | −54.7 (3) | C12—C13—C17—C20 | 78.8 (3) |
C7—C8—C9—C11 | −175.7 (2) | C14—C13—C17—C20 | −164.8 (2) |
C14—C8—C9—C11 | −50.3 (3) | C19—C13—C17—C16 | 79.0 (3) |
C7—C8—C9—C10 | 55.5 (3) | C12—C13—C17—C16 | −155.4 (2) |
C14—C8—C9—C10 | −179.1 (2) | C14—C13—C17—C16 | −39.0 (3) |
C2—C1—C10—C18 | −170.0 (2) | C15—C16—C17—C20 | 149.8 (3) |
C2—C1—C10—C5 | −52.7 (3) | C15—C16—C17—C13 | 19.5 (3) |
C2—C1—C10—C9 | 67.9 (3) | C13—C17—C20—C25 | −56.5 (4) |
C6—C5—C10—C18 | −69.4 (3) | C16—C17—C20—C25 | −177.5 (3) |
C4—C5—C10—C18 | 164.4 (2) | C13—C17—C20—C21 | 179.5 (3) |
C6—C5—C10—C1 | 175.0 (2) | C16—C17—C20—C21 | 58.5 (3) |
C4—C5—C10—C1 | 48.8 (3) | C25—C20—C21—C22 | 65.9 (4) |
C6—C5—C10—C9 | 52.2 (3) | C17—C20—C21—C22 | −168.2 (3) |
C4—C5—C10—C9 | −74.0 (3) | C20—C21—C22—C23 | −172.9 (3) |
C11—C9—C10—C18 | −62.0 (3) | C24—O6—C23—O5 | 1.0 (5) |
C8—C9—C10—C18 | 66.7 (3) | C24—O6—C23—C22 | −178.4 (3) |
C11—C9—C10—C1 | 57.7 (3) | C21—C22—C23—O5 | −0.9 (5) |
C8—C9—C10—C1 | −173.7 (2) | C21—C22—C23—O6 | 178.5 (3) |
C11—C9—C10—C5 | 177.5 (2) | C3—O1—C26—O3 | 5.0 (5) |
C8—C9—C10—C5 | −53.9 (3) | C3—O1—C26—O4 | −175.2 (2) |
C8—C9—C11—C12 | 51.3 (3) | C27—O4—C26—O3 | 1.9 (5) |
C10—C9—C11—C12 | −179.4 (2) | C27—O4—C26—O1 | −177.9 (2) |
C9—C11—C12—C13 | −55.0 (3) | C26—O4—C27—Cl1 | 82.3 (3) |
C11—C12—C13—C19 | −65.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···O2i | 0.97 | 2.49 | 3.339 (4) | 146 |
C27—H27B···O5ii | 0.97 | 2.40 | 3.270 (4) | 149 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1/2, −y, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C27H43ClO6 |
Mr | 499.06 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 294 |
a, b, c (Å) | 7.8896 (13), 10.9493 (17), 30.683 (5) |
V (Å3) | 2650.6 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.24 × 0.20 × 0.12 |
Data collection | |
Diffractometer | Bruker APEXII CCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15292, 5411, 3191 |
Rint | 0.054 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.050, 0.118, 0.94 |
No. of reflections | 5411 |
No. of parameters | 311 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.19 |
Absolute structure | Flack (1983), 2309 Friedel pairs |
Absolute structure parameter | −0.10 (9) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C11—H11B···O2i | 0.97 | 2.49 | 3.339 (4) | 145.6 |
C27—H27B···O5ii | 0.97 | 2.40 | 3.270 (4) | 149.2 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1/2, −y, z−1/2. |
Acknowledgements
We gratefully acknowledge financial support from the National Natural Science Foundation of China (Nos. 81072530 and 30772653).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, (I) (Fig. 1), methyl 3-((chloromethoxy)carbonyloxy-7- hydroxycholan-24-oate was synthesized according to a general literature procedure (von Geldern et al., 2004).
Bile acid is a widely studied and used pharmaceutical molecule (Kannan et al., 2001). It can be used to treat jaundice, gallstones (Lindley & Carey, 1987) etc. Ursodeoxycholic acid (UDCA) and chenodeoxycholic acid (CDCA) are two most famous analogues of bile acid. Here we report the crystal structure of a UDCA derivative.
In the crystal structure, rings A and B are cis fused while rings B/C/D are trans fused. The dihedral angles of A/B, B/C, C/D are 62.89 (8)°, 2.70 (14)° and 5.05 (17)°, respectively. So the skeleton of the title compound exhibits a V shape with the 3-α and 17-β side chains stretched as the arms. In the crystal packing (Fig. 2), two adjacent molecules located along the b axis are interlocked head to tail due to weak hydrogen bondings (C11—H11B···O2 and C27—H27B···O5, Table 1). Therefore each molecule of the title compound is linked to four neighboring molecules by four C—H···O hydrogen bonds.