organic compounds
Theobrominium perchlorate dibenzo-18-crown-6 3.25-hydrate
aInstitut für Anorganische Chemie, Universität zu Köln, Greinstrasse 6, D-50939 Köln, Germany
*Correspondence e-mail: gerd.meyer@uni-koeln.de
The 7H9N4O2+·ClO4−·C20H24O6·3.25H2O, consists of theobrominium (3,7-dimethyl-2,6-dioxo-1H-purin-9-ium) cations, perchlorate anions and dibenzo-18-crown-6 and water molecules. The crown ether is in a bent conformation, in which the planes of the aromatic rings subtend an angle of 63.7 (1)°. Intermolecular O—H⋯O hydrogen bonding between the water molecules and the O atoms of the cyclic ether delimit an empty space reminiscent of a hollow cage. The water molecules are additionally linked to the cations by N—H⋯O hydrogen bonding. One of the positions of the water molecules is occupied only fractionally (25%) and is located outside this framework.
CRelated literature
For applications of ). For host–guest chemistry of dibenzo-18-crown-6 with nitrogen bases, see: Lämsä et al. (1998). For the of dibenzo-18-crown-6, see: Lima et al. (2008).
see: Lehn (1995Experimental
Crystal data
|
Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-AREA; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Crystal Impact, 2012); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536813014463/nc2312sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813014463/nc2312Isup2.hkl
Theobromine (18 mg, 0.1 mmol) was dissolved in aqueous HClO4 solution (5.6 ml, 6.4%) and added to the suspension of AgClO4 (20 mg, 0.1 mmol) and dibenzo-18-crown-6 (36 mg, 0.1 mmol) in a mixture of toluene (6.3 ml) and dichloromethane (0.3 ml). The biphasic suspension was stirred vigorously for 1.5 hrs. and filtered. After 6 weeks of slow solvent evaporation at room temperature and several cycles of filtration the mother liquor was cooled for 10 days at 4°C. One colourless pentagonal prismatic crystal could be isolated among thin colourless intergrown needles.
All C—H and N—H H atoms were positioned with idealized geometry and were refined isotropic with Uiso(H) = 1.2 Ueq(C, N) (1.5 for methyl H atoms) using a riding model with C - H = 0.970 Å for methylene, 0.930 Å for aromatic, 0.97 Å for methyl and 0.86 Å for N—H H atoms. The O—H H atoms of the water molecules at O1W, O2W and O3W were located in difference map, their bond lengths were set to 0.82 Å and afterwards they were refined isotropic with Uiso(H) = 1.5 Ueq(O) using a riding model. The position of the water molecule O4W is occupied to only 25% and its H atoms were not located.
Benzene substituted
have been instrumental for the development of supramolecular chemistry (Lehn, 1995). Among other areas, biological implications attracted scientific interest, due to the vital importance of host–guest interactions for biological processes (Lämsä et al., 1998 and references therein). Theobromine is one of the biomolecules that are likely to interact with bioreceptors which show some similarities with crown ethers.In the
of the title compound the dibenzo-18-crown-6 molecule is in the usual bent conformation (Fig. 1) The angle between the planes of the aromatic rings is 63.7 (1)°, which is slightly lower than the one reported for the of the neat molecule (Lima et al., 2008). The oxygen atoms of the ether build hydrogen bonds with two water molecules above (O1W and O3W) and one below (O2W) the central part of the ring (Fig. 2). The resulting geometric arrangement is reminiscent of a hollow cage with O-atoms on the vertices and H-bonds defining the sides. The "cages" are interlinked with one another via H-bonds between water molecules. The theobrominium ions are connected to the H-bonding framework via intermolecular N—H···O hydrogen bonding between N9 and O3W (Table 1).The pyrimidine ring of the theobromine molecule appears to be superimposed over one of the aromatic rings of dibenzo-18-crown-6. The angle enclosed by the planes of the purine and benzene ring is 9.18 (8)°. Due to this relatively large value of the interplanar angle, π-π stacking interactions between both aromatic moieties appear to be unlikely.
For applications of
see: Lehn (1995). For host–guest chemistry of dibenzo-18-crown-6 with N-bases, see: Lämsä et al. (1998). For the of dibenzo-18-crown-6, see: Lima et al. (2008).Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-AREA (Stoe & Cie, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Crystal Impact, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Crystal structure of the title compound with labeling and displacement ellipsoids drawn at the 30% probability level. H atoms are shown as small spheres of arbitrary radii and intermolecular hydrogen bonding is shown as dashed lines. | |
Fig. 2. View of the dibenzo-18-crown-6 molecule and the co-crystallizing water molecules with intermolecular O—H···O hydrogen bonding shwon as dashed lines. |
C7H9N4O2+·ClO4−·C20H24O6·3.23H2O | F(000) = 1472 |
Mr = 699.58 | Dx = 1.412 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 51177 reflections |
a = 11.9292 (3) Å | θ = 0.8–27.4° |
b = 15.2505 (5) Å | µ = 0.19 mm−1 |
c = 18.1222 (5) Å | T = 293 K |
V = 3296.90 (16) Å3 | Pentagonal prism, colourless |
Z = 4 | 0.5 × 0.5 × 0.3 mm |
Stoe & Cie IPDS II diffractometer | 7018 independent reflections |
Radiation source: fine-focus sealed tube | 5299 reflections with I > 4σ(I) |
Graphite monochromator | Rint = 0.084 |
ω and φ scans | θmax = 26.8°, θmin = 2.4° |
Absorption correction: numerical [X-RED (Stoe & Cie, 2001) and X-SHAPE (Stoe & Cie, 1999)] | h = −14→15 |
Tmin = 0.991, Tmax = 0.997 | k = −19→19 |
51074 measured reflections | l = −22→22 |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.049 | w = 1/[σ2(Fo2) + (0.0909P)2 + 0.3494P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.156 | (Δ/σ)max < 0.001 |
S = 1.04 | Δρmax = 0.32 e Å−3 |
7017 reflections | Δρmin = −0.33 e Å−3 |
434 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0142 (14) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 3092 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.02 (10) |
C7H9N4O2+·ClO4−·C20H24O6·3.23H2O | V = 3296.90 (16) Å3 |
Mr = 699.58 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 11.9292 (3) Å | µ = 0.19 mm−1 |
b = 15.2505 (5) Å | T = 293 K |
c = 18.1222 (5) Å | 0.5 × 0.5 × 0.3 mm |
Stoe & Cie IPDS II diffractometer | 7018 independent reflections |
Absorption correction: numerical [X-RED (Stoe & Cie, 2001) and X-SHAPE (Stoe & Cie, 1999)] | 5299 reflections with I > 4σ(I) |
Tmin = 0.991, Tmax = 0.997 | Rint = 0.084 |
51074 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | H-atom parameters constrained |
wR(F2) = 0.156 | Δρmax = 0.32 e Å−3 |
S = 1.04 | Δρmin = −0.33 e Å−3 |
7017 reflections | Absolute structure: Flack (1983), 3092 Friedel pairs |
434 parameters | Absolute structure parameter: 0.02 (10) |
0 restraints |
Experimental. Absorption correction: The absorption correction (X-RED; Stoe & Cie, 2001) was performed after optimizing the crystal shape using X-SHAPE (Stoe & Cie, 1999). A suitable single-crystal was carefully selected under a polarizing microscope and mounted in a glass capillary. The scattering intensities were collected on an imaging plate diffractometer (IPDS II, Stoe & Cie) equipped with a fine focus sealed tube X-ray source (Mo Kα, λ = 0.71073 Å) operating at 50 kV and 40 mA. Intensity data for [C7H9N4O2]+ [ClO4]-. C20H24O6 . (H2O)3.25 were collected at 170 K by ω-scans in 360 frames (0 < ω < 180°; φ = O°, 0 < ω < 180°; φ = 90°, exposure time of 5 min) in the 2 Θ range 4.88 to 54.41°. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O2 | 0.4670 (2) | 1.15212 (15) | 0.28756 (13) | 0.0795 (6) | |
O6 | 0.4096 (2) | 0.96464 (16) | 0.47863 (13) | 0.0807 (6) | |
N1 | 0.44307 (18) | 1.05635 (15) | 0.38208 (14) | 0.0625 (5) | |
H1 | 0.4110 | 1.0977 | 0.4065 | 0.075* | |
N3 | 0.5349 (2) | 1.01361 (16) | 0.27257 (14) | 0.0660 (6) | |
N7 | 0.5362 (2) | 0.82655 (16) | 0.38593 (16) | 0.0726 (6) | |
N9 | 0.5930 (2) | 0.85970 (17) | 0.27451 (16) | 0.0743 (7) | |
H9 | 0.6221 | 0.8547 | 0.2313 | 0.089* | |
C2 | 0.4802 (2) | 1.07851 (18) | 0.31248 (17) | 0.0635 (6) | |
C3 | 0.5843 (4) | 1.0351 (3) | 0.20151 (19) | 0.0875 (9) | |
H3A | 0.5502 | 1.0875 | 0.1825 | 0.131* | |
H3B | 0.5720 | 0.9877 | 0.1677 | 0.131* | |
H3C | 0.6634 | 1.0445 | 0.2074 | 0.131* | |
C4 | 0.5461 (2) | 0.93354 (18) | 0.30451 (17) | 0.0627 (6) | |
C5 | 0.5097 (2) | 0.91390 (18) | 0.37377 (16) | 0.0625 (6) | |
C6 | 0.4505 (2) | 0.97669 (19) | 0.41781 (17) | 0.0633 (6) | |
C7 | 0.5171 (4) | 0.7767 (2) | 0.4533 (2) | 0.0985 (12) | |
H7A | 0.4483 | 0.7955 | 0.4758 | 0.148* | |
H7B | 0.5781 | 0.7862 | 0.4869 | 0.148* | |
H7C | 0.5122 | 0.7154 | 0.4416 | 0.148* | |
C8 | 0.5846 (3) | 0.7971 (2) | 0.3256 (2) | 0.0798 (9) | |
H8 | 0.6098 | 0.7399 | 0.3194 | 0.096* | |
O11 | 0.88091 (18) | 0.59317 (13) | 0.11303 (14) | 0.0735 (5) | |
O12 | 0.85891 (16) | 0.62645 (15) | −0.03842 (12) | 0.0727 (5) | |
O13 | 0.83609 (19) | 0.80905 (15) | −0.06969 (11) | 0.0743 (5) | |
O14 | 0.85961 (18) | 0.92968 (13) | 0.02745 (12) | 0.0702 (5) | |
O15 | 0.90850 (16) | 0.89503 (13) | 0.17826 (12) | 0.0663 (5) | |
O16 | 0.9051 (2) | 0.71309 (14) | 0.21114 (11) | 0.0718 (5) | |
C11 | 0.8407 (2) | 0.5724 (2) | 0.1810 (2) | 0.0746 (8) | |
C12 | 0.8526 (3) | 0.6374 (2) | 0.2340 (2) | 0.0768 (9) | |
C13 | 0.8139 (3) | 0.6234 (3) | 0.3055 (2) | 0.1026 (14) | |
H13 | 0.8210 | 0.6659 | 0.3421 | 0.123* | |
C14 | 0.7622 (4) | 0.5399 (4) | 0.3200 (3) | 0.121 (2) | |
H14 | 0.7349 | 0.5283 | 0.3671 | 0.146* | |
C15 | 0.7523 (4) | 0.4778 (4) | 0.2674 (4) | 0.127 (2) | |
H15 | 0.7194 | 0.4241 | 0.2782 | 0.153* | |
C16 | 0.7903 (3) | 0.4945 (2) | 0.1998 (3) | 0.0981 (13) | |
H16 | 0.7824 | 0.4515 | 0.1637 | 0.118* | |
C17 | 0.8778 (3) | 0.5258 (2) | 0.0583 (2) | 0.0854 (10) | |
H17A | 0.8008 | 0.5091 | 0.0482 | 0.102* | |
H17B | 0.9181 | 0.4745 | 0.0755 | 0.102* | |
C18 | 0.9306 (3) | 0.5608 (2) | −0.0088 (2) | 0.0851 (10) | |
H18A | 1.0032 | 0.5859 | 0.0030 | 0.102* | |
H18B | 0.9414 | 0.5143 | −0.0445 | 0.102* | |
C19 | 0.9059 (3) | 0.6708 (3) | −0.10055 (17) | 0.0792 (9) | |
H19A | 0.9171 | 0.6296 | −0.1406 | 0.095* | |
H19B | 0.9781 | 0.6954 | −0.0874 | 0.095* | |
C20 | 0.8298 (3) | 0.7414 (3) | −0.12458 (16) | 0.0803 (9) | |
H20A | 0.8528 | 0.7639 | −0.1723 | 0.096* | |
H20B | 0.7537 | 0.7196 | −0.1286 | 0.096* | |
C21 | 0.7786 (2) | 0.8836 (2) | −0.08359 (18) | 0.0740 (8) | |
C22 | 0.7899 (2) | 0.9493 (2) | −0.03031 (19) | 0.0736 (8) | |
C23 | 0.7343 (3) | 1.0296 (3) | −0.0379 (2) | 0.0947 (12) | |
H23 | 0.7404 | 1.0735 | −0.0026 | 0.114* | |
C24 | 0.6683 (4) | 1.0404 (4) | −0.1022 (4) | 0.125 (2) | |
H24 | 0.6303 | 1.0930 | −0.1091 | 0.150* | |
C25 | 0.6586 (4) | 0.9765 (5) | −0.1541 (3) | 0.130 (2) | |
H25 | 0.6151 | 0.9859 | −0.1959 | 0.155* | |
C26 | 0.7125 (3) | 0.8991 (3) | −0.1449 (2) | 0.0967 (12) | |
H26 | 0.7049 | 0.8555 | −0.1804 | 0.116* | |
C27 | 0.8772 (3) | 0.99687 (19) | 0.0821 (2) | 0.0762 (8) | |
H27A | 0.8072 | 1.0107 | 0.1067 | 0.091* | |
H27B | 0.9055 | 1.0498 | 0.0590 | 0.091* | |
C28 | 0.9597 (3) | 0.9629 (2) | 0.13603 (19) | 0.0747 (8) | |
H28A | 1.0247 | 0.9400 | 0.1103 | 0.090* | |
H28B | 0.9841 | 1.0098 | 0.1684 | 0.090* | |
C29 | 0.9845 (3) | 0.8518 (2) | 0.22719 (18) | 0.0738 (8) | |
H29A | 1.0125 | 0.8930 | 0.2635 | 0.089* | |
H29B | 1.0479 | 0.8290 | 0.1996 | 0.089* | |
C30 | 0.9255 (3) | 0.7794 (2) | 0.26431 (17) | 0.0782 (8) | |
H30A | 0.9710 | 0.7564 | 0.3042 | 0.094* | |
H30B | 0.8552 | 0.8002 | 0.2848 | 0.094* | |
Cl1 | 0.22252 (9) | 0.73830 (6) | 0.35970 (7) | 0.1009 (3) | |
O21 | 0.1452 (4) | 0.7997 (2) | 0.3897 (2) | 0.1286 (11) | |
O22 | 0.1621 (4) | 0.6775 (2) | 0.3156 (3) | 0.1529 (16) | |
O23 | 0.3015 (3) | 0.7825 (3) | 0.3166 (3) | 0.1486 (14) | |
O24 | 0.2795 (4) | 0.6895 (3) | 0.4140 (3) | 0.171 (2) | |
O1W | 0.67017 (17) | 0.69899 (13) | 0.04627 (11) | 0.0677 (5) | |
H1O1 | 0.7331 | 0.6867 | 0.0312 | 0.102* | |
H2O1 | 0.6246 | 0.7115 | 0.0141 | 0.102* | |
O2W | 1.00739 (19) | 0.76413 (15) | 0.05640 (12) | 0.0791 (6) | |
H1O2 | 0.9760 | 0.7346 | 0.0881 | 0.119* | |
H2O2 | 0.9660 | 0.8065 | 0.0507 | 0.119* | |
O3W | 0.69410 (18) | 0.83435 (16) | 0.14960 (13) | 0.0825 (6) | |
H1O3 | 0.6811 | 0.7941 | 0.1208 | 0.128* | |
H2O3 | 0.7613 | 0.8457 | 0.1496 | 0.124* | |
O4W | 0.7438 (9) | 0.6622 (7) | 0.4630 (4) | 0.093 (3) | 0.25 |
U11 | U22 | U33 | U12 | U13 | U23 | |
O2 | 0.0822 (14) | 0.0664 (12) | 0.0901 (15) | 0.0001 (10) | −0.0082 (11) | 0.0057 (11) |
O6 | 0.0735 (12) | 0.0897 (15) | 0.0787 (14) | −0.0036 (11) | 0.0036 (11) | 0.0004 (11) |
N1 | 0.0560 (11) | 0.0606 (12) | 0.0708 (13) | 0.0022 (10) | −0.0049 (10) | −0.0053 (10) |
N3 | 0.0592 (12) | 0.0669 (14) | 0.0718 (14) | −0.0034 (10) | −0.0010 (10) | −0.0057 (11) |
N7 | 0.0647 (13) | 0.0625 (13) | 0.0906 (17) | −0.0016 (11) | −0.0157 (13) | −0.0026 (13) |
N9 | 0.0607 (13) | 0.0712 (15) | 0.0910 (17) | 0.0033 (12) | −0.0082 (12) | −0.0223 (14) |
C2 | 0.0523 (13) | 0.0614 (15) | 0.0767 (17) | −0.0024 (11) | −0.0096 (12) | −0.0057 (13) |
C3 | 0.104 (2) | 0.085 (2) | 0.0738 (19) | −0.007 (2) | 0.0098 (18) | −0.0055 (16) |
C4 | 0.0486 (12) | 0.0618 (15) | 0.0777 (17) | −0.0023 (11) | −0.0086 (12) | −0.0121 (13) |
C5 | 0.0542 (13) | 0.0585 (14) | 0.0749 (17) | −0.0012 (11) | −0.0100 (12) | −0.0035 (12) |
C6 | 0.0496 (12) | 0.0694 (16) | 0.0710 (17) | −0.0045 (11) | −0.0085 (12) | −0.0038 (13) |
C7 | 0.109 (3) | 0.075 (2) | 0.111 (3) | −0.007 (2) | −0.023 (2) | 0.021 (2) |
C8 | 0.0647 (16) | 0.0633 (17) | 0.111 (3) | 0.0032 (14) | −0.0195 (18) | −0.0124 (18) |
O11 | 0.0724 (12) | 0.0569 (10) | 0.0911 (14) | −0.0054 (9) | −0.0053 (11) | 0.0116 (10) |
O12 | 0.0560 (10) | 0.0762 (12) | 0.0859 (13) | 0.0014 (9) | 0.0037 (10) | −0.0127 (10) |
O13 | 0.0752 (12) | 0.0826 (13) | 0.0653 (11) | −0.0069 (11) | −0.0087 (10) | 0.0054 (10) |
O14 | 0.0688 (11) | 0.0595 (10) | 0.0823 (12) | 0.0028 (9) | −0.0039 (10) | 0.0050 (9) |
O15 | 0.0538 (9) | 0.0670 (11) | 0.0782 (11) | −0.0086 (8) | −0.0064 (9) | −0.0077 (9) |
O16 | 0.0812 (12) | 0.0683 (11) | 0.0659 (11) | −0.0003 (10) | 0.0046 (10) | 0.0055 (9) |
C11 | 0.0516 (13) | 0.0677 (17) | 0.105 (2) | 0.0049 (12) | −0.0009 (15) | 0.0291 (17) |
C12 | 0.0557 (14) | 0.082 (2) | 0.093 (2) | 0.0131 (14) | 0.0066 (14) | 0.0339 (18) |
C13 | 0.077 (2) | 0.125 (3) | 0.106 (3) | 0.032 (2) | 0.022 (2) | 0.057 (3) |
C14 | 0.071 (2) | 0.148 (4) | 0.145 (4) | 0.033 (3) | 0.037 (3) | 0.093 (4) |
C15 | 0.071 (2) | 0.110 (3) | 0.202 (6) | 0.017 (2) | 0.024 (3) | 0.076 (4) |
C16 | 0.0577 (16) | 0.079 (2) | 0.158 (4) | 0.0009 (15) | −0.003 (2) | 0.056 (2) |
C17 | 0.0680 (18) | 0.0517 (15) | 0.136 (3) | 0.0050 (13) | −0.020 (2) | −0.0096 (17) |
C18 | 0.0648 (17) | 0.0672 (18) | 0.123 (3) | 0.0087 (15) | −0.0039 (18) | −0.0287 (19) |
C19 | 0.0619 (15) | 0.106 (2) | 0.0696 (17) | −0.0173 (16) | 0.0104 (14) | −0.0302 (17) |
C20 | 0.0731 (18) | 0.112 (2) | 0.0557 (14) | −0.0240 (18) | 0.0015 (13) | −0.0057 (16) |
C21 | 0.0556 (14) | 0.093 (2) | 0.0732 (17) | −0.0043 (14) | −0.0020 (13) | 0.0311 (17) |
C22 | 0.0534 (14) | 0.0809 (19) | 0.0866 (19) | 0.0008 (13) | 0.0076 (14) | 0.0316 (17) |
C23 | 0.0722 (19) | 0.096 (2) | 0.117 (3) | 0.0136 (18) | 0.016 (2) | 0.045 (2) |
C24 | 0.081 (2) | 0.144 (4) | 0.150 (4) | 0.029 (3) | 0.016 (3) | 0.085 (4) |
C25 | 0.089 (3) | 0.185 (6) | 0.115 (3) | 0.019 (4) | −0.006 (3) | 0.080 (4) |
C26 | 0.0722 (19) | 0.140 (3) | 0.078 (2) | −0.006 (2) | −0.0080 (17) | 0.042 (2) |
C27 | 0.0732 (18) | 0.0524 (14) | 0.103 (2) | −0.0064 (13) | 0.0146 (17) | −0.0025 (15) |
C28 | 0.0644 (15) | 0.0657 (16) | 0.094 (2) | −0.0155 (13) | 0.0059 (15) | −0.0140 (15) |
C29 | 0.0573 (15) | 0.088 (2) | 0.0756 (18) | −0.0004 (14) | −0.0136 (14) | −0.0204 (15) |
C30 | 0.0702 (18) | 0.101 (2) | 0.0633 (16) | 0.0113 (17) | −0.0067 (14) | −0.0063 (16) |
Cl1 | 0.0875 (6) | 0.0753 (5) | 0.1399 (9) | 0.0048 (4) | −0.0248 (6) | −0.0116 (5) |
O21 | 0.155 (3) | 0.099 (2) | 0.132 (2) | 0.010 (2) | 0.018 (2) | −0.0204 (19) |
O22 | 0.135 (3) | 0.110 (2) | 0.213 (4) | 0.006 (2) | −0.068 (3) | −0.051 (3) |
O23 | 0.116 (3) | 0.150 (3) | 0.180 (4) | −0.009 (2) | 0.014 (3) | −0.001 (3) |
O24 | 0.164 (4) | 0.122 (3) | 0.227 (5) | −0.013 (3) | −0.103 (4) | 0.031 (3) |
O1W | 0.0572 (10) | 0.0723 (11) | 0.0737 (11) | 0.0037 (9) | 0.0079 (9) | 0.0034 (9) |
O2W | 0.0788 (13) | 0.0803 (13) | 0.0782 (13) | −0.0053 (11) | 0.0104 (11) | 0.0007 (10) |
O3W | 0.0557 (10) | 0.0893 (15) | 0.1025 (15) | −0.0050 (10) | 0.0010 (10) | −0.0266 (13) |
O4W | 0.114 (7) | 0.121 (7) | 0.045 (4) | 0.059 (6) | −0.014 (4) | −0.015 (4) |
O2—C2 | 1.220 (4) | C15—H15 | 0.9300 |
O6—C6 | 1.219 (4) | C16—H16 | 0.9300 |
N1—C2 | 1.379 (4) | C17—C18 | 1.471 (5) |
N1—C6 | 1.379 (4) | C17—H17A | 0.9700 |
N1—H1 | 0.8600 | C17—H17B | 0.9700 |
N3—C4 | 1.358 (4) | C18—H18A | 0.9700 |
N3—C2 | 1.388 (4) | C18—H18B | 0.9700 |
N3—C3 | 1.454 (4) | C19—C20 | 1.474 (5) |
N7—C8 | 1.315 (5) | C19—H19A | 0.9700 |
N7—C5 | 1.387 (4) | C19—H19B | 0.9700 |
N7—C7 | 1.456 (5) | C20—H20A | 0.9700 |
N9—C8 | 1.334 (5) | C20—H20B | 0.9700 |
N9—C4 | 1.370 (4) | C21—C26 | 1.382 (4) |
N9—H9 | 0.8600 | C21—C22 | 1.398 (5) |
C3—H3A | 0.9600 | C22—C23 | 1.399 (5) |
C3—H3B | 0.9600 | C23—C24 | 1.415 (7) |
C3—H3C | 0.9600 | C23—H23 | 0.9300 |
C4—C5 | 1.361 (4) | C24—C25 | 1.360 (8) |
C5—C6 | 1.433 (4) | C24—H24 | 0.9300 |
C7—H7A | 0.9600 | C25—C26 | 1.355 (8) |
C7—H7B | 0.9600 | C25—H25 | 0.9300 |
C7—H7C | 0.9600 | C26—H26 | 0.9300 |
C8—H8 | 0.9300 | C27—C28 | 1.481 (5) |
O11—C11 | 1.359 (4) | C27—H27A | 0.9700 |
O11—C17 | 1.428 (4) | C27—H27B | 0.9700 |
O12—C18 | 1.422 (4) | C28—H28A | 0.9700 |
O12—C19 | 1.428 (4) | C28—H28B | 0.9700 |
O13—C21 | 1.351 (4) | C29—C30 | 1.471 (5) |
O13—C20 | 1.435 (4) | C29—H29A | 0.9700 |
O14—C22 | 1.370 (4) | C29—H29B | 0.9700 |
O14—C27 | 1.440 (4) | C30—H30A | 0.9700 |
O15—C28 | 1.424 (4) | C30—H30B | 0.9700 |
O15—C29 | 1.430 (4) | Cl1—O23 | 1.397 (4) |
O16—C12 | 1.377 (4) | Cl1—O24 | 1.408 (4) |
O16—C30 | 1.418 (4) | Cl1—O22 | 1.421 (3) |
C11—C16 | 1.375 (4) | Cl1—O21 | 1.422 (4) |
C11—C12 | 1.388 (5) | O1W—H1O1 | 0.8201 |
C12—C13 | 1.392 (5) | O1W—H2O1 | 0.8201 |
C13—C14 | 1.439 (7) | O2W—H1O2 | 0.8201 |
C13—H13 | 0.9300 | O2W—H2O2 | 0.8199 |
C14—C15 | 1.348 (8) | O3W—H1O3 | 0.8200 |
C14—H14 | 0.9300 | O3W—H2O3 | 0.8200 |
C15—C16 | 1.330 (8) | ||
C2—N1—C6 | 128.7 (2) | O12—C18—C17 | 108.1 (3) |
C2—N1—H1 | 115.7 | O12—C18—H18A | 110.1 |
C6—N1—H1 | 115.7 | C17—C18—H18A | 110.1 |
C4—N3—C2 | 117.7 (3) | O12—C18—H18B | 110.1 |
C4—N3—C3 | 122.7 (3) | C17—C18—H18B | 110.1 |
C2—N3—C3 | 119.4 (3) | H18A—C18—H18B | 108.4 |
C8—N7—C5 | 107.2 (3) | O12—C19—C20 | 109.7 (2) |
C8—N7—C7 | 125.9 (3) | O12—C19—H19A | 109.7 |
C5—N7—C7 | 126.8 (3) | C20—C19—H19A | 109.7 |
C8—N9—C4 | 106.4 (3) | O12—C19—H19B | 109.7 |
C8—N9—H9 | 126.8 | C20—C19—H19B | 109.7 |
C4—N9—H9 | 126.8 | H19A—C19—H19B | 108.2 |
O2—C2—N1 | 121.5 (3) | O13—C20—C19 | 106.7 (2) |
O2—C2—N3 | 121.6 (3) | O13—C20—H20A | 110.4 |
N1—C2—N3 | 116.9 (2) | C19—C20—H20A | 110.4 |
N3—C3—H3A | 109.5 | O13—C20—H20B | 110.4 |
N3—C3—H3B | 109.5 | C19—C20—H20B | 110.4 |
H3A—C3—H3B | 109.5 | H20A—C20—H20B | 108.6 |
N3—C3—H3C | 109.5 | O13—C21—C26 | 125.7 (4) |
H3A—C3—H3C | 109.5 | O13—C21—C22 | 115.2 (3) |
H3B—C3—H3C | 109.5 | C26—C21—C22 | 119.2 (3) |
N3—C4—C5 | 124.0 (3) | O14—C22—C21 | 115.4 (3) |
N3—C4—N9 | 127.6 (3) | O14—C22—C23 | 123.7 (4) |
C5—C4—N9 | 108.4 (3) | C21—C22—C23 | 120.9 (3) |
C4—C5—N7 | 106.6 (3) | C22—C23—C24 | 116.6 (5) |
C4—C5—C6 | 121.6 (3) | C22—C23—H23 | 121.7 |
N7—C5—C6 | 131.8 (3) | C24—C23—H23 | 121.7 |
O6—C6—N1 | 122.1 (3) | C25—C24—C23 | 122.2 (5) |
O6—C6—C5 | 126.9 (3) | C25—C24—H24 | 118.9 |
N1—C6—C5 | 111.0 (3) | C23—C24—H24 | 118.9 |
N7—C7—H7A | 109.5 | C26—C25—C24 | 120.0 (5) |
N7—C7—H7B | 109.5 | C26—C25—H25 | 120.0 |
H7A—C7—H7B | 109.5 | C24—C25—H25 | 120.0 |
N7—C7—H7C | 109.5 | C25—C26—C21 | 121.2 (5) |
H7A—C7—H7C | 109.5 | C25—C26—H26 | 119.4 |
H7B—C7—H7C | 109.5 | C21—C26—H26 | 119.4 |
N7—C8—N9 | 111.4 (3) | O14—C27—C28 | 107.5 (2) |
N7—C8—H8 | 124.3 | O14—C27—H27A | 110.2 |
N9—C8—H8 | 124.3 | C28—C27—H27A | 110.2 |
C11—O11—C17 | 116.9 (3) | O14—C27—H27B | 110.2 |
C18—O12—C19 | 113.3 (3) | C28—C27—H27B | 110.2 |
C21—O13—C20 | 116.7 (3) | H27A—C27—H27B | 108.5 |
C22—O14—C27 | 117.3 (2) | O15—C28—C27 | 108.9 (2) |
C28—O15—C29 | 113.4 (2) | O15—C28—H28A | 109.9 |
C12—O16—C30 | 118.1 (3) | C27—C28—H28A | 109.9 |
O11—C11—C16 | 125.5 (4) | O15—C28—H28B | 109.9 |
O11—C11—C12 | 115.1 (3) | C27—C28—H28B | 109.9 |
C16—C11—C12 | 119.4 (4) | H28A—C28—H28B | 108.3 |
O16—C12—C11 | 115.9 (3) | O15—C29—C30 | 109.0 (2) |
O16—C12—C13 | 124.0 (4) | O15—C29—H29A | 109.9 |
C11—C12—C13 | 120.1 (4) | C30—C29—H29A | 109.9 |
C12—C13—C14 | 116.6 (5) | O15—C29—H29B | 109.9 |
C12—C13—H13 | 121.7 | C30—C29—H29B | 109.9 |
C14—C13—H13 | 121.7 | H29A—C29—H29B | 108.3 |
C15—C14—C13 | 122.0 (4) | O16—C30—C29 | 107.8 (2) |
C15—C14—H14 | 119.0 | O16—C30—H30A | 110.1 |
C13—C14—H14 | 119.0 | C29—C30—H30A | 110.1 |
C16—C15—C14 | 119.2 (5) | O16—C30—H30B | 110.1 |
C16—C15—H15 | 120.4 | C29—C30—H30B | 110.1 |
C14—C15—H15 | 120.4 | H30A—C30—H30B | 108.5 |
C15—C16—C11 | 122.8 (5) | O23—Cl1—O24 | 108.7 (3) |
C15—C16—H16 | 118.6 | O23—Cl1—O22 | 110.0 (3) |
C11—C16—H16 | 118.6 | O24—Cl1—O22 | 107.1 (3) |
O11—C17—C18 | 107.6 (3) | O23—Cl1—O21 | 109.5 (3) |
O11—C17—H17A | 110.2 | O24—Cl1—O21 | 113.2 (3) |
C18—C17—H17A | 110.2 | O22—Cl1—O21 | 108.4 (2) |
O11—C17—H17B | 110.2 | H1O1—O1W—H2O1 | 115.1 |
C18—C17—H17B | 110.2 | H1O2—O2W—H2O2 | 104.2 |
H17A—C17—H17B | 108.5 | H1O3—O3W—H2O3 | 110.1 |
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···O3W | 0.86 | 1.74 | 2.594 (4) | 172 |
O1W—H1O1···O12 | 0.82 | 2.17 | 2.941 (3) | 158 |
O2W—H1O2···O16 | 0.82 | 2.41 | 3.156 (3) | 152 |
O2W—H1O2···O11 | 0.82 | 2.48 | 3.182 (3) | 145 |
O2W—H2O2···O14 | 0.82 | 2.31 | 3.124 (3) | 175 |
O3W—H1O3···O1W | 0.82 | 1.99 | 2.802 (3) | 172 |
O3W—H2O3···O15 | 0.82 | 1.98 | 2.769 (3) | 161 |
N1—H1···O1Wi | 0.86 | 2.01 | 2.871 (3) | 174 |
O1W—H2O1···O2Wii | 0.82 | 1.93 | 2.747 (3) | 175 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x−1/2, −y+3/2, −z. |
Experimental details
Crystal data | |
Chemical formula | C7H9N4O2+·ClO4−·C20H24O6·3.23H2O |
Mr | 699.58 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 11.9292 (3), 15.2505 (5), 18.1222 (5) |
V (Å3) | 3296.90 (16) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.19 |
Crystal size (mm) | 0.5 × 0.5 × 0.3 |
Data collection | |
Diffractometer | Stoe & Cie IPDS II |
Absorption correction | Numerical [X-RED (Stoe & Cie, 2001) and X-SHAPE (Stoe & Cie, 1999)] |
Tmin, Tmax | 0.991, 0.997 |
No. of measured, independent and observed [I > 4σ(I)] reflections | 51074, 7018, 5299 |
Rint | 0.084 |
(sin θ/λ)max (Å−1) | 0.635 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.156, 1.04 |
No. of reflections | 7017 |
No. of parameters | 434 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.33 |
Absolute structure | Flack (1983), 3092 Friedel pairs |
Absolute structure parameter | 0.02 (10) |
Computer programs: X-AREA (Stoe & Cie, 2002), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), DIAMOND (Crystal Impact, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
N9—H9···O3W | 0.86 | 1.74 | 2.594 (4) | 171.9 |
O1W—H1O1···O12 | 0.82 | 2.17 | 2.941 (3) | 157.7 |
O2W—H1O2···O16 | 0.82 | 2.41 | 3.156 (3) | 152.1 |
O2W—H1O2···O11 | 0.82 | 2.48 | 3.182 (3) | 144.5 |
O2W—H2O2···O14 | 0.82 | 2.31 | 3.124 (3) | 175.3 |
O3W—H1O3···O1W | 0.82 | 1.99 | 2.802 (3) | 172.4 |
O3W—H2O3···O15 | 0.82 | 1.98 | 2.769 (3) | 161.3 |
N1—H1···O1Wi | 0.86 | 2.01 | 2.871 (3) | 174.2 |
O1W—H2O1···O2Wii | 0.82 | 1.93 | 2.747 (3) | 174.9 |
Symmetry codes: (i) −x+1, y+1/2, −z+1/2; (ii) x−1/2, −y+3/2, −z. |
Acknowledgements
VK is grateful to the Studienstiftung des Deutschen Volkes for a PhD scholarship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzene substituted crown ethers have been instrumental for the development of supramolecular chemistry (Lehn, 1995). Among other areas, biological implications attracted scientific interest, due to the vital importance of host–guest interactions for biological processes (Lämsä et al., 1998 and references therein). Theobromine is one of the biomolecules that are likely to interact with bioreceptors which show some similarities with crown ethers.
In the crystal structure of the title compound the dibenzo-18-crown-6 molecule is in the usual bent conformation (Fig. 1) The angle between the planes of the aromatic rings is 63.7 (1)°, which is slightly lower than the one reported for the crystal structure of the neat molecule (Lima et al., 2008). The oxygen atoms of the ether build hydrogen bonds with two water molecules above (O1W and O3W) and one below (O2W) the central part of the ring (Fig. 2). The resulting geometric arrangement is reminiscent of a hollow cage with O-atoms on the vertices and H-bonds defining the sides. The "cages" are interlinked with one another via H-bonds between water molecules. The theobrominium ions are connected to the H-bonding framework via intermolecular N—H···O hydrogen bonding between N9 and O3W (Table 1).
The pyrimidine ring of the theobromine molecule appears to be superimposed over one of the aromatic rings of dibenzo-18-crown-6. The angle enclosed by the planes of the purine and benzene ring is 9.18 (8)°. Due to this relatively large value of the interplanar angle, π-π stacking interactions between both aromatic moieties appear to be unlikely.