metal-organic compounds
cis-Bromido(methylamine)bis(propane-1,3-diamine)cobalt(III) dibromide
aDepartment of Physics, S.M.K. Fomra Institute of Technology, Thaiyur, Chennai 603 103, India, bDepartment of Chemistry, Pondicherry University, Pondicherry 605 014, India, and cDepartment of Physics, Presidency College (Autonomous), Chennai 600 005, India
*Correspondence e-mail: a_sp59@yahoo.in
In the title compound, [CoBr(CH5N)(C3H10N2)2]Br2, the cobaltIII ion has a distorted octahedral coordination environment and is surrounded by four N atoms in the equatorial plane, with an additional N atom and the Br atom occupying the axial positions. In the crystal, the complex cation and the two counter anions are linked via N—H⋯Br and C—H⋯Br hydrogen bonds, forming a three-dimensional network.
Related literature
In the synthesis of cobalt(III) complexes, substituting an amino ligand for the MeNH2 moiety can yield complexes of similar structure, but with differing electron-transfer rates, see: Anbalagan (2011); Anbalagan et al. (2011). For the biological activity and potential applications of mixed-ligand cobalt(III) complexes, see: Arslan et al. (2009); Delehanty et al. (2008); Sayed et al. (1992); Teicher et al. (1990); Chang et al. (2010). For related structures, see: Anbalagan et al. (2009); Lee et al. (2007); Ramesh et al. (2008); Ravichandran et al. (2009). For Co—N bond lengths, see: Maheshwaran et al. (2013).
Experimental
Crystal data
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Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S160053681301516X/rn2115sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681301516X/rn2115Isup2.hkl
Crystalline trans-[CoIII(tn)2Br2]Br (2g) was made into a paste using 3-4 drops of water. To the solid mass, about 4 ml of 0.12 M methyl amine (MeNH2) was dropped for 30 min and mixed well. The grinding of a dull green paste was continued to obtain a red mass and the reaction mixture was set aside until no further change was observed. Then the product was allowed to stand overnight and the solid was washed with ethanol. The final product was dissolved in 5-10 ml of water pre-heated to 70°C and allowed to crystallize in hot acidified water(few drops of hot conc. HCl and 2 ml of water and cooled). Finally, microcrystalline pink color crystals were retrieved (yield 0.87 g), filtered, washed with ethanol and dried over vacuum. X-ray quality crystals were obtained by recrystallization from hot acidified distilled water.
All H atoms were fixed geometrically and allowed to ride on their parent C atoms, with C—H distances fixed in the range 0.93–0.97 Å with Uiso(H) = 1.5Ueq(C) for methyl H 1.2Ueq(C) for other H atoms.
Mixed ligand cobalt(III) complexes find potential applications in the fields of antitumor, antibacterial, antimicrobial, radiosenzitation and cytotoxicity activities (Sayed et al., 1992; Teicher et al., 1990; Arslan et al., 2009; Delehanty et al., 2008). Cobalt is an essential and integral component of vitamin B12, therefore it is physiologically found in most tissues. Complexes of cobalt are useful for nutritional supplementation to provide cobalt in a form which effectively increases the bioavailability, for instance, vitamin B12 by microorganisms present in the gut. In addition, cobalt(III) complexes are known for
and ligand substitution reactions, which find applications in chemical and biological systems. Against this background and to ascertain the the of the title compound has been carried out.The present research is the design and synthesis of cobalt(III) complexes with an objective to understand the structure-reactivity correlation. Substituting an amino ligand for the MeNH2 moiety can yield complexes of similar structure, but with differing
rates (Anbalagan, 2011; Anbalagan et al., 2011).X-ray analysis confirms the molecular structure and atom connectivity as illustrated in Fig. 1. The bond lengths [Co-N] in (Fig. 1) agree with those observed [1.9722 (2) to 1.988 (2)Å] in the literature (Maheshwaran et al. (2013). The whole molecule is not planar as the dihedral angle between the two pyrimidine rings is 84.8 (5)°. The bond lengths [Co-N] are comparable with the values reported[1.9493 (1) to 1.9673 (2)Å]in the literature (Lee et al., 2007; Ramesh et al., 2008; Anbalagan et al., 2009; Ravichandran et al.,2009). One of the six membered rings in the molecule adopts a chair conformation. The crystal packing is stabilized by C–H···Br and N–H···Br interactions along the a axis as shown in Fig.2.
In the synthesis of cobalt(III) complexes, substituting an amino ligand for the MeNH2 moiety can yield complexes of similar structure, but with differing electron-transfer rates, see: Anbalagan (2011); Anbalagan et al. (2011). For the biological activity and potential applications of mixed-ligand cobalt(III) complexes, see: Arslan et al. (2009); Delehanty et al. (2008); Sayed et al. (1992); Teicher et al. (1990); Chang et al. (2010). For related structures, see: Anbalagan et al. (2009); Lee et al. (2007); Ramesh et al. (2008); Ravichandran et al. (2009). For Co—N bond lengths, see: Maheshwaran et al. (2013).
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell
CrysAlis CCD (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. View of the title molecule with the atom labelling scheme. The displacement ellipsoids are drawn at the 30% probability level while the H atoms are shown as small spheres of arbitrary radii. | |
Fig. 2. The molecular packing viewed down the a axis. Dashed lines shows the intermolecular N-H···Br and C-H···Br hydrogen bonds. |
[CoBr(CH5N)(C3H10N2)2]Br2 | F(000) = 936 |
Mr = 477.95 | Dx = 2.004 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ybc | Cell parameters from 2784 reflections |
a = 13.4418 (2) Å | θ = 2.8–25.0° |
b = 8.3088 (1) Å | µ = 8.64 mm−1 |
c = 15.1538 (2) Å | T = 293 K |
β = 110.61 (2)° | Block, pink |
V = 1584.16 (4) Å3 | 0.25 × 0.22 × 0.19 mm |
Z = 4 |
Oxford Diffraction Xcalibur Eos diffractometer | 2784 independent reflections |
Radiation source: fine-focus sealed tube | 1701 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.042 |
ω and φ scans | θmax = 25.0°, θmin = 2.8° |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | h = −15→15 |
Tmin = 0.133, Tmax = 0.194 | k = −9→9 |
6000 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.073 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.238 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.1435P)2] where P = (Fo2 + 2Fc2)/3 |
2784 reflections | (Δ/σ)max < 0.001 |
146 parameters | Δρmax = 1.50 e Å−3 |
0 restraints | Δρmin = −2.69 e Å−3 |
[CoBr(CH5N)(C3H10N2)2]Br2 | V = 1584.16 (4) Å3 |
Mr = 477.95 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.4418 (2) Å | µ = 8.64 mm−1 |
b = 8.3088 (1) Å | T = 293 K |
c = 15.1538 (2) Å | 0.25 × 0.22 × 0.19 mm |
β = 110.61 (2)° |
Oxford Diffraction Xcalibur Eos diffractometer | 2784 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 1701 reflections with I > 2σ(I) |
Tmin = 0.133, Tmax = 0.194 | Rint = 0.042 |
6000 measured reflections |
R[F2 > 2σ(F2)] = 0.073 | 0 restraints |
wR(F2) = 0.238 | H-atom parameters constrained |
S = 1.07 | Δρmax = 1.50 e Å−3 |
2784 reflections | Δρmin = −2.69 e Å−3 |
146 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.7910 (12) | −0.1257 (17) | 0.3267 (9) | 0.045 (4) | |
H1A | 0.7559 | −0.2250 | 0.3325 | 0.054* | |
H1B | 0.8575 | −0.1541 | 0.3190 | 0.054* | |
C2 | 0.7216 (13) | −0.038 (2) | 0.2389 (10) | 0.056 (4) | |
H2A | 0.7566 | 0.0620 | 0.2334 | 0.067* | |
H2B | 0.7157 | −0.1030 | 0.1842 | 0.067* | |
C3 | 0.6107 (12) | 0.0016 (18) | 0.2366 (10) | 0.050 (4) | |
H3A | 0.5682 | 0.0407 | 0.1744 | 0.060* | |
H3B | 0.5774 | −0.0953 | 0.2488 | 0.060* | |
C4 | 0.8425 (12) | 0.4274 (18) | 0.4830 (12) | 0.057 (4) | |
H4A | 0.7892 | 0.4891 | 0.4979 | 0.068* | |
H4B | 0.8831 | 0.5004 | 0.4588 | 0.068* | |
C5 | 0.9195 (13) | 0.336 (2) | 0.5754 (11) | 0.058 (5) | |
H5A | 0.9642 | 0.2605 | 0.5579 | 0.070* | |
H5B | 0.9651 | 0.4139 | 0.6189 | 0.070* | |
C6 | 0.8508 (14) | 0.245 (2) | 0.6238 (11) | 0.066 (5) | |
H6A | 0.8962 | 0.2131 | 0.6866 | 0.079* | |
H6B | 0.7977 | 0.3187 | 0.6305 | 0.079* | |
C7 | 0.6526 (9) | −0.2195 (12) | 0.4742 (10) | 0.032 (3) | |
H7A | 0.6497 | −0.2628 | 0.4146 | 0.047* | |
H7B | 0.6053 | −0.2787 | 0.4970 | 0.047* | |
H7C | 0.7238 | −0.2280 | 0.5186 | 0.047* | |
N1 | 0.6135 (8) | 0.1214 (12) | 0.3058 (7) | 0.030 (2) | |
H1C | 0.5473 | 0.1264 | 0.3074 | 0.036* | |
H1D | 0.6251 | 0.2161 | 0.2822 | 0.036* | |
N2 | 0.8141 (7) | −0.0346 (11) | 0.4126 (7) | 0.027 (2) | |
H2C | 0.8726 | 0.0238 | 0.4188 | 0.033* | |
H2D | 0.8332 | −0.1067 | 0.4599 | 0.033* | |
N3 | 0.7916 (8) | 0.3030 (13) | 0.4129 (8) | 0.036 (3) | |
H3C | 0.8430 | 0.2608 | 0.3947 | 0.043* | |
H3D | 0.7466 | 0.3545 | 0.3623 | 0.043* | |
N4 | 0.7983 (7) | 0.1060 (13) | 0.5734 (7) | 0.032 (3) | |
H4C | 0.7564 | 0.0679 | 0.6037 | 0.038* | |
H4D | 0.8488 | 0.0312 | 0.5795 | 0.038* | |
N5 | 0.6215 (8) | −0.0543 (14) | 0.4628 (8) | 0.040 (3) | |
H5C | 0.6091 | −0.0255 | 0.5152 | 0.047* | |
H5D | 0.5584 | −0.0503 | 0.4151 | 0.047* | |
Co1 | 0.71072 (12) | 0.11628 (19) | 0.43861 (10) | 0.0226 (5) | |
Br1 | 0.59629 (16) | 0.3048 (2) | 0.47361 (15) | 0.0770 (7) | |
Br2 | 0.63730 (10) | 0.49197 (15) | 0.20461 (9) | 0.0347 (4) | |
Br3 | 1.01970 (11) | 0.19252 (18) | 0.37939 (10) | 0.0427 (5) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.066 (10) | 0.044 (9) | 0.038 (8) | −0.001 (8) | 0.033 (8) | −0.007 (7) |
C2 | 0.068 (11) | 0.070 (11) | 0.026 (8) | −0.016 (9) | 0.014 (8) | −0.020 (8) |
C3 | 0.047 (9) | 0.066 (11) | 0.023 (7) | −0.011 (8) | −0.003 (7) | 0.002 (8) |
C4 | 0.054 (10) | 0.040 (9) | 0.068 (12) | −0.025 (8) | 0.012 (9) | −0.021 (9) |
C5 | 0.045 (9) | 0.076 (12) | 0.035 (9) | −0.002 (9) | −0.009 (8) | −0.009 (9) |
C6 | 0.076 (12) | 0.074 (11) | 0.024 (8) | 0.019 (10) | −0.012 (8) | −0.017 (8) |
C7 | 0.021 (6) | 0.008 (6) | 0.074 (10) | −0.004 (5) | 0.028 (7) | 0.001 (6) |
N1 | 0.026 (6) | 0.036 (6) | 0.025 (6) | 0.004 (5) | 0.004 (5) | 0.012 (5) |
N2 | 0.027 (6) | 0.026 (5) | 0.022 (6) | −0.008 (5) | 0.001 (5) | −0.011 (5) |
N3 | 0.023 (5) | 0.043 (6) | 0.030 (6) | 0.006 (5) | −0.006 (5) | 0.003 (6) |
N4 | 0.023 (5) | 0.050 (7) | 0.020 (5) | 0.003 (5) | 0.006 (4) | −0.004 (5) |
N5 | 0.025 (6) | 0.062 (8) | 0.030 (6) | −0.009 (6) | 0.008 (5) | 0.005 (6) |
Co1 | 0.0207 (9) | 0.0284 (9) | 0.0152 (8) | 0.0014 (7) | 0.0021 (7) | 0.0000 (7) |
Br1 | 0.0685 (13) | 0.0820 (14) | 0.0784 (15) | 0.0148 (10) | 0.0233 (11) | 0.0000 (11) |
Br2 | 0.0320 (8) | 0.0419 (8) | 0.0268 (7) | 0.0045 (6) | 0.0061 (6) | 0.0049 (6) |
Br3 | 0.0342 (8) | 0.0514 (10) | 0.0363 (9) | 0.0058 (7) | 0.0046 (6) | 0.0074 (7) |
C1—N2 | 1.442 (15) | C7—N5 | 1.427 (15) |
C1—C2 | 1.52 (2) | C7—H7A | 0.9600 |
C1—H1A | 0.9700 | C7—H7B | 0.9600 |
C1—H1B | 0.9700 | C7—H7C | 0.9600 |
C2—C3 | 1.51 (2) | N1—Co1 | 1.977 (9) |
C2—H2A | 0.9700 | N1—H1C | 0.9000 |
C2—H2B | 0.9700 | N1—H1D | 0.9000 |
C3—N1 | 1.436 (17) | N2—Co1 | 2.012 (9) |
C3—H3A | 0.9700 | N2—H2C | 0.9000 |
C3—H3B | 0.9700 | N2—H2D | 0.9000 |
C4—N3 | 1.467 (16) | N3—Co1 | 2.010 (11) |
C4—C5 | 1.61 (2) | N3—H3C | 0.9000 |
C4—H4A | 0.9700 | N3—H3D | 0.9000 |
C4—H4B | 0.9700 | N4—Co1 | 1.967 (9) |
C5—C6 | 1.56 (2) | N4—H4C | 0.9000 |
C5—H5A | 0.9700 | N4—H4D | 0.9000 |
C5—H5B | 0.9700 | N5—Co1 | 1.973 (10) |
C6—N4 | 1.429 (18) | N5—H5C | 0.9000 |
C6—H6A | 0.9700 | N5—H5D | 0.9000 |
C6—H6B | 0.9700 | Co1—Br1 | 2.383 (2) |
N2—C1—C2 | 114.2 (12) | Co1—N1—H1C | 106.2 |
N2—C1—H1A | 108.7 | C3—N1—H1D | 106.2 |
C2—C1—H1A | 108.7 | Co1—N1—H1D | 106.2 |
N2—C1—H1B | 108.7 | H1C—N1—H1D | 106.4 |
C2—C1—H1B | 108.7 | C1—N2—Co1 | 124.1 (8) |
H1A—C1—H1B | 107.6 | C1—N2—H2C | 106.3 |
C3—C2—C1 | 114.9 (12) | Co1—N2—H2C | 106.3 |
C3—C2—H2A | 108.6 | C1—N2—H2D | 106.3 |
C1—C2—H2A | 108.6 | Co1—N2—H2D | 106.3 |
C3—C2—H2B | 108.6 | H2C—N2—H2D | 106.4 |
C1—C2—H2B | 108.6 | C4—N3—Co1 | 123.3 (9) |
H2A—C2—H2B | 107.5 | C4—N3—H3C | 106.5 |
N1—C3—C2 | 111.1 (11) | Co1—N3—H3C | 106.5 |
N1—C3—H3A | 109.4 | C4—N3—H3D | 106.5 |
C2—C3—H3A | 109.4 | Co1—N3—H3D | 106.5 |
N1—C3—H3B | 109.4 | H3C—N3—H3D | 106.5 |
C2—C3—H3B | 109.4 | C6—N4—Co1 | 121.5 (9) |
H3A—C3—H3B | 108.0 | C6—N4—H4C | 107.0 |
N3—C4—C5 | 107.0 (12) | Co1—N4—H4C | 107.0 |
N3—C4—H4A | 110.3 | C6—N4—H4D | 107.0 |
C5—C4—H4A | 110.3 | Co1—N4—H4D | 107.0 |
N3—C4—H4B | 110.3 | H4C—N4—H4D | 106.7 |
C5—C4—H4B | 110.3 | C7—N5—Co1 | 122.8 (8) |
H4A—C4—H4B | 108.6 | C7—N5—H5C | 106.6 |
C6—C5—C4 | 109.3 (13) | Co1—N5—H5C | 106.6 |
C6—C5—H5A | 109.8 | C7—N5—H5D | 106.6 |
C4—C5—H5A | 109.8 | Co1—N5—H5D | 106.6 |
C6—C5—H5B | 109.8 | H5C—N5—H5D | 106.6 |
C4—C5—H5B | 109.8 | N4—Co1—N5 | 87.5 (4) |
H5A—C5—H5B | 108.3 | N4—Co1—N1 | 175.7 (4) |
N4—C6—C5 | 113.8 (12) | N5—Co1—N1 | 88.7 (4) |
N4—C6—H6A | 108.8 | N4—Co1—N3 | 93.9 (4) |
C5—C6—H6A | 108.8 | N5—Co1—N3 | 175.2 (4) |
N4—C6—H6B | 108.8 | N1—Co1—N3 | 89.7 (4) |
C5—C6—H6B | 108.8 | N4—Co1—N2 | 88.5 (4) |
H6A—C6—H6B | 107.7 | N5—Co1—N2 | 95.5 (4) |
N5—C7—H7A | 109.5 | N1—Co1—N2 | 93.9 (4) |
N5—C7—H7B | 109.5 | N3—Co1—N2 | 89.1 (4) |
H7A—C7—H7B | 109.5 | N4—Co1—Br1 | 89.7 (3) |
N5—C7—H7C | 109.5 | N5—Co1—Br1 | 87.1 (3) |
H7A—C7—H7C | 109.5 | N1—Co1—Br1 | 88.0 (3) |
H7B—C7—H7C | 109.5 | N3—Co1—Br1 | 88.4 (3) |
C3—N1—Co1 | 124.5 (8) | N2—Co1—Br1 | 176.8 (3) |
C3—N1—H1C | 106.2 | ||
N2—C1—C2—C3 | −63.7 (17) | C7—N5—Co1—Br1 | −167.0 (11) |
C1—C2—C3—N1 | 68.7 (16) | C3—N1—Co1—N4 | −104 (6) |
N3—C4—C5—C6 | −70.6 (16) | C3—N1—Co1—N5 | −75.2 (11) |
C4—C5—C6—N4 | 72.2 (17) | C3—N1—Co1—N3 | 109.4 (11) |
C2—C3—N1—Co1 | −47.0 (15) | C3—N1—Co1—N2 | 20.3 (11) |
C2—C1—N2—Co1 | 35.9 (16) | C3—N1—Co1—Br1 | −162.3 (10) |
C5—C4—N3—Co1 | 54.3 (15) | C4—N3—Co1—N4 | −31.1 (11) |
C5—C6—N4—Co1 | −51.8 (16) | C4—N3—Co1—N5 | 76 (6) |
C6—N4—Co1—N5 | −148.1 (11) | C4—N3—Co1—N1 | 146.5 (11) |
C6—N4—Co1—N1 | −119 (5) | C4—N3—Co1—N2 | −119.5 (11) |
C6—N4—Co1—N3 | 27.3 (11) | C4—N3—Co1—Br1 | 58.5 (10) |
C6—N4—Co1—N2 | 116.4 (11) | C1—N2—Co1—N4 | 162.3 (10) |
C6—N4—Co1—Br1 | −61.0 (11) | C1—N2—Co1—N5 | 74.9 (10) |
C7—N5—Co1—N4 | −77.1 (11) | C1—N2—Co1—N1 | −14.2 (10) |
C7—N5—Co1—N1 | 105.0 (11) | C1—N2—Co1—N3 | −103.8 (10) |
C7—N5—Co1—N3 | 175 (5) | C1—N2—Co1—Br1 | −142 (5) |
C7—N5—Co1—N2 | 11.1 (11) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···Br2i | 0.90 | 2.67 | 3.489 (11) | 152 |
N1—H1D···Br2 | 0.90 | 2.61 | 3.504 (10) | 174 |
N2—H2C···Br3 | 0.90 | 2.66 | 3.526 (10) | 162 |
N2—H2D···Br3ii | 0.90 | 2.64 | 3.419 (10) | 146 |
N3—H3C···Br3 | 0.90 | 2.53 | 3.406 (12) | 164 |
N3—H3D···Br2 | 0.90 | 2.59 | 3.482 (11) | 171 |
N4—H4C···Br2iii | 0.90 | 2.62 | 3.511 (10) | 170 |
N4—H4D···Br3ii | 0.90 | 2.49 | 3.379 (11) | 170 |
N5—H5C···Br2iii | 0.90 | 2.77 | 3.632 (11) | 160 |
N5—H5D···Br2i | 0.90 | 2.64 | 3.532 (12) | 170 |
C6—H6A···Br3iii | 0.97 | 2.91 | 3.773 (16) | 148 |
C7—H7B···Br1iv | 0.96 | 2.90 | 3.766 (13) | 150 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+2, −y, −z+1; (iii) x, −y+1/2, z+1/2; (iv) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | [CoBr(CH5N)(C3H10N2)2]Br2 |
Mr | 477.95 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 13.4418 (2), 8.3088 (1), 15.1538 (2) |
β (°) | 110.61 (2) |
V (Å3) | 1584.16 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 8.64 |
Crystal size (mm) | 0.25 × 0.22 × 0.19 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.133, 0.194 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6000, 2784, 1701 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.238, 1.07 |
No. of reflections | 2784 |
No. of parameters | 146 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 1.50, −2.69 |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1C···Br2i | 0.90 | 2.67 | 3.489 (11) | 152 |
N1—H1D···Br2 | 0.90 | 2.61 | 3.504 (10) | 174 |
N2—H2C···Br3 | 0.90 | 2.66 | 3.526 (10) | 162 |
N2—H2D···Br3ii | 0.90 | 2.64 | 3.419 (10) | 146 |
N3—H3C···Br3 | 0.90 | 2.53 | 3.406 (12) | 164 |
N3—H3D···Br2 | 0.90 | 2.59 | 3.482 (11) | 171 |
N4—H4C···Br2iii | 0.90 | 2.62 | 3.511 (10) | 170 |
N4—H4D···Br3ii | 0.90 | 2.49 | 3.379 (11) | 170 |
N5—H5C···Br2iii | 0.90 | 2.77 | 3.632 (11) | 160 |
N5—H5D···Br2i | 0.90 | 2.64 | 3.532 (12) | 170 |
C6—H6A···Br3iii | 0.97 | 2.91 | 3.773 (16) | 148 |
C7—H7B···Br1iv | 0.96 | 2.90 | 3.766 (13) | 150 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) −x+2, −y, −z+1; (iii) x, −y+1/2, z+1/2; (iv) −x+1, −y, −z+1. |
Acknowledgements
KA is thankful to the CSIR, New Delhi [Lr: No. 01 (2570)/12/EMR-II/3.4.2012] for financial support through a major research project. The authors are thankful to the Department of Chemistry, Pondicherry University, for the single-crystal XRD instrumentation facility.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Mixed ligand cobalt(III) complexes find potential applications in the fields of antitumor, antibacterial, antimicrobial, radiosenzitation and cytotoxicity activities (Sayed et al., 1992; Teicher et al., 1990; Arslan et al., 2009; Delehanty et al., 2008). Cobalt is an essential and integral component of vitamin B12, therefore it is physiologically found in most tissues. Complexes of cobalt are useful for nutritional supplementation to provide cobalt in a form which effectively increases the bioavailability, for instance, vitamin B12 by microorganisms present in the gut. In addition, cobalt(III) complexes are known for electron transfer and ligand substitution reactions, which find applications in chemical and biological systems. Against this background and to ascertain the molecular conformation, the structure determination of the title compound has been carried out.
The present research is the design and synthesis of cobalt(III) complexes with an objective to understand the structure-reactivity correlation. Substituting an amino ligand for the MeNH2 moiety can yield complexes of similar structure, but with differing electron transfer rates (Anbalagan, 2011; Anbalagan et al., 2011).
X-ray analysis confirms the molecular structure and atom connectivity as illustrated in Fig. 1. The bond lengths [Co-N] in (Fig. 1) agree with those observed [1.9722 (2) to 1.988 (2)Å] in the literature (Maheshwaran et al. (2013). The whole molecule is not planar as the dihedral angle between the two pyrimidine rings is 84.8 (5)°. The bond lengths [Co-N] are comparable with the values reported[1.9493 (1) to 1.9673 (2)Å]in the literature (Lee et al., 2007; Ramesh et al., 2008; Anbalagan et al., 2009; Ravichandran et al.,2009). One of the six membered rings in the molecule adopts a chair conformation. The crystal packing is stabilized by C–H···Br and N–H···Br interactions along the a axis as shown in Fig.2.