organic compounds
4,4′-Dimethyl-2,2′-{[2,3,3a,4,5,6,7,7a-octahydro-1H-benzimidazole-1,3-diyl]bis(methylene)}diphenol
aUniversidad Nacional de Colombia, Sede Bogotá, Facultad de Ciencias, Departamento de Química, Cra 30 No. 45-03, Bogotá, Código Postal 111321, Colombia, bUniversidad Nacional de Colombia, Sede Manizales, Colombia, and cInstitut für Anorganische Chemie, J. W. Goethe-Universität Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt/Main, Germany
*Correspondence e-mail: ariverau@unal.edu.co
The 23H30N2O2, contains one half-molecule, with a twofold axis splitting the molecule in two identical halves. The structure of the has been reported previously [Rivera et al. (2009) J. Chem. Crystallogr. 39, 827–830] but the enantiomer reported here crystallized in the orthorhombic P21212 (Z = 2), whereas the racemate occurs in the triclinic P-1 (Z = 2). The observed molecular conformation is stabilized by two intramolecular O—H⋯N hydrogen bonds, which generate rings with graph-set motif S(6). In the crystal, molecules are linked via non-classical C—H⋯O interactions, which stack the molecules along the b axis.
of the title compound, CRelated literature
For the structure of the original racemate, see: Rivera et al. (2009). For the use of 1,3-diazaheterocyclic-bridged bis(phenols) in coordination chemistry, see: Kober et al. (2012); Xu et al. (2007). For the synthesis of the precursor, (2R,7R)- 1,8,10,12-tetraazatetracyclo[8.3.118,12.02,7]pentadecane, see: Rivera et al. (2012). For bond-length data, see: Allen et al. (1987). For graph-set analysis, see: Bernstein et al. (1995).
Experimental
Crystal data
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Data collection: X-AREA (Stoe & Cie, 2001); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008); software used to prepare material for publication: SHELXL2012.
Supporting information
https://doi.org/10.1107/S1600536813015237/sj5327sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813015237/sj5327Isup2.hkl
The title compound was synthesized according to the published procedure (Rivera et al., 2012) by reacting (2R,7R)-1,8,10,12-tetraazatetracyclo [8.3.118,12.02,7]pentadecane (1 mmol, [α]20D -25.1, c = O.6% CH2Cl2) and p-cresol (1 mmol). After work-up a solid was obtained by slow evaporation from chloroform at room temperature. After standing for two days, crystals suitable for X-ray diffraction were grown from a solution in CHCl3 obtained in 37% yield, m.p. = 464 K, [α]20D -54.4, c = O.6 in CHCl3.
The hydroxyl H atom was freely refined. H atoms bound to carbon were refined using a riding model with methyl C—H = 0.98 Å, aromatic C—H = 0.95 Å, secondary C—H = 0.99 Å, and with Uiso(H) = 1.5Ueq(C) for methyl H or 1.2Ueq(C) for aromatic and secondary H.
_reflns_Friedel_fraction is defined as the number of unique Friedel pairs measured divided by the number that would be possible theoretically, ignoring centric projections and systematic absences
Chiral 1,3-diazaheterocyclic-bridged bis(phenols) form stable complexes with several metals and are of interest as ligands to metal complexes because they produce asymmetric coordination compounds (Xu et al., 2007; Kober et al., 2012) and therefore may be involved in enantioselective catalysis.
The title compound (I) was synthesized in a one-step reaction between the chiral macrocyclic aminal (2R,7R)-1,8,10,12-tetraazatetracyclo[8.3.118,12.02,7]pentadecane and p-cresol. Single crystals of were obtained by recrystallization from CHCl3 solution.
The molecular structure and atom-numbering scheme for (I) are shown in Fig. 1. The bond lengths and angles are within normal ranges (Allen et al., 1987) and are comparable with those reported previously reported racemate (Rivera et al., 2009). The
of the title P21212, differs from that of the racemate which was triclinic, P-1. (Rivera et al., 2009).The
of (I) shows two intramolecular hydrogen bonds generating rings with graph-set motif S(6) (Bernstein et al., 1995) (Table 1). In the crystal, molecules are linked via non-classical intermolecular C—H···O interactions, which stack the molecules along the b axis.For the structure of the original racemate, see: Rivera et al. (2009). For the use of 1,3-diazaheterocyclic-bridged bis(phenols) in coordination chemistry, see: Kober et al. (2012); Xu et al. (2007). For the synthesis of the precursor, (2R,7R)- 1,8,10,12-tetraazatetracyclo[8.3.118,12.02,7]pentadecane, see: Rivera et al. (2012). For bond-length data, see: Allen et al. (1987). For graph-set analysis, see: Bernstein et al. (1995).
Data collection: X-AREA (Stoe & Cie, 2001); cell
X-AREA (Stoe & Cie, 2001); data reduction: X-RED32 (Stoe & Cie, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008); software used to prepare material for publication: SHELXL2012 (Sheldrick, 2008).C23H30N2O2 | Dx = 1.212 Mg m−3 |
Mr = 366.49 | Mo Kα radiation, λ = 0.71073 Å |
Orthorhombic, P21212 | Cell parameters from 16515 reflections |
a = 18.5417 (9) Å | θ = 2.2–27.5° |
b = 6.0597 (4) Å | µ = 0.08 mm−1 |
c = 8.9415 (5) Å | T = 173 K |
V = 1004.64 (10) Å3 | Plate, colourless |
Z = 2 | 0.31 × 0.27 × 0.12 mm |
F(000) = 396 |
STOE IPDS II two-circle- diffractometer | 2058 reflections with I > 2σ(I) |
Radiation source: Genix 3D IµS microfocus X-ray source | Rint = 0.053 |
ω scans | θmax = 26.9°, θmin = 2.2° |
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001) | h = −23→23 |
Tmin = 0.976, Tmax = 0.991 | k = −7→7 |
12723 measured reflections | l = −11→11 |
2168 independent reflections |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.034 | w = 1/[σ2(Fo2) + (0.0482P)2 + 0.1419P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.090 | (Δ/σ)max < 0.001 |
S = 1.04 | Δρmax = 0.14 e Å−3 |
2168 reflections | Δρmin = −0.13 e Å−3 |
129 parameters | Extinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.075 (11) |
C23H30N2O2 | V = 1004.64 (10) Å3 |
Mr = 366.49 | Z = 2 |
Orthorhombic, P21212 | Mo Kα radiation |
a = 18.5417 (9) Å | µ = 0.08 mm−1 |
b = 6.0597 (4) Å | T = 173 K |
c = 8.9415 (5) Å | 0.31 × 0.27 × 0.12 mm |
STOE IPDS II two-circle- diffractometer | 2168 independent reflections |
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001) | 2058 reflections with I > 2σ(I) |
Tmin = 0.976, Tmax = 0.991 | Rint = 0.053 |
12723 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.090 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.14 e Å−3 |
2168 reflections | Δρmin = −0.13 e Å−3 |
129 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.41870 (7) | 0.5018 (2) | 0.60166 (17) | 0.0414 (3) | |
H1 | 0.4384 (19) | 0.376 (6) | 0.668 (4) | 0.097 (11)* | |
N1 | 0.44460 (7) | 0.0979 (2) | 0.70721 (16) | 0.0303 (3) | |
C1 | 0.45928 (9) | 0.0063 (3) | 0.85614 (19) | 0.0340 (4) | |
H1A | 0.4393 | −0.1468 | 0.8611 | 0.041* | |
C2 | 0.43253 (11) | 0.1352 (4) | 0.9905 (2) | 0.0477 (5) | |
H2A | 0.3792 | 0.1414 | 0.9901 | 0.057* | |
H2B | 0.4513 | 0.2880 | 0.9873 | 0.057* | |
C3 | 0.45917 (12) | 0.0182 (5) | 1.1318 (2) | 0.0596 (7) | |
H3A | 0.4458 | 0.1074 | 1.2204 | 0.071* | |
H3B | 0.4347 | −0.1264 | 1.1405 | 0.071* | |
C4 | 0.5000 | 0.0000 | 0.6072 (3) | 0.0305 (5) | |
H4 | 0.5217 | 0.1150 | 0.5427 | 0.037* | |
C5 | 0.36990 (9) | 0.0576 (3) | 0.6571 (2) | 0.0332 (4) | |
H5A | 0.3362 | 0.1007 | 0.7378 | 0.040* | |
H5B | 0.3634 | −0.1021 | 0.6380 | 0.040* | |
C11 | 0.35166 (9) | 0.1843 (3) | 0.5173 (2) | 0.0301 (4) | |
C12 | 0.37743 (9) | 0.3996 (3) | 0.4958 (2) | 0.0330 (4) | |
C13 | 0.35991 (10) | 0.5134 (3) | 0.3660 (2) | 0.0389 (4) | |
H13 | 0.3788 | 0.6571 | 0.3496 | 0.047* | |
C14 | 0.31501 (10) | 0.4180 (4) | 0.2604 (2) | 0.0389 (4) | |
H14 | 0.3032 | 0.4983 | 0.1724 | 0.047* | |
C15 | 0.28681 (10) | 0.2075 (3) | 0.2801 (2) | 0.0359 (4) | |
C16 | 0.30625 (9) | 0.0935 (3) | 0.4097 (2) | 0.0320 (4) | |
H16 | 0.2878 | −0.0511 | 0.4249 | 0.038* | |
C17 | 0.23790 (11) | 0.1007 (4) | 0.1658 (2) | 0.0452 (5) | |
H17A | 0.2278 | 0.2060 | 0.0852 | 0.068* | |
H17B | 0.1926 | 0.0571 | 0.2138 | 0.068* | |
H17C | 0.2617 | −0.0300 | 0.1241 | 0.068* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0387 (7) | 0.0295 (6) | 0.0559 (8) | −0.0030 (6) | −0.0083 (6) | −0.0022 (7) |
N1 | 0.0243 (7) | 0.0345 (7) | 0.0319 (7) | 0.0019 (6) | 0.0008 (5) | 0.0008 (6) |
C1 | 0.0298 (9) | 0.0385 (8) | 0.0337 (9) | 0.0043 (7) | 0.0003 (6) | 0.0036 (8) |
C2 | 0.0383 (10) | 0.0677 (14) | 0.0371 (10) | 0.0140 (10) | 0.0033 (9) | −0.0034 (10) |
C3 | 0.0501 (13) | 0.0951 (19) | 0.0335 (10) | 0.0207 (13) | 0.0048 (9) | 0.0018 (12) |
C4 | 0.0262 (10) | 0.0315 (11) | 0.0339 (11) | 0.0007 (9) | 0.000 | 0.000 |
C5 | 0.0251 (8) | 0.0346 (8) | 0.0398 (9) | −0.0014 (7) | −0.0005 (7) | 0.0043 (7) |
C11 | 0.0238 (7) | 0.0296 (8) | 0.0369 (9) | 0.0024 (6) | 0.0013 (7) | 0.0006 (7) |
C12 | 0.0274 (8) | 0.0301 (8) | 0.0414 (9) | 0.0012 (7) | 0.0003 (7) | −0.0015 (8) |
C13 | 0.0371 (9) | 0.0316 (8) | 0.0482 (10) | 0.0008 (7) | 0.0058 (8) | 0.0062 (8) |
C14 | 0.0377 (9) | 0.0410 (10) | 0.0380 (9) | 0.0077 (8) | 0.0028 (8) | 0.0062 (8) |
C15 | 0.0305 (8) | 0.0409 (10) | 0.0363 (9) | 0.0048 (7) | 0.0014 (8) | −0.0021 (8) |
C16 | 0.0270 (8) | 0.0303 (8) | 0.0388 (9) | 0.0001 (7) | 0.0020 (7) | −0.0013 (7) |
C17 | 0.0427 (10) | 0.0546 (11) | 0.0384 (10) | 0.0024 (9) | −0.0037 (8) | −0.0041 (10) |
O1—C12 | 1.365 (2) | C5—C11 | 1.505 (2) |
O1—H1 | 1.03 (4) | C5—H5A | 0.9900 |
N1—C1 | 1.468 (2) | C5—H5B | 0.9900 |
N1—C5 | 1.476 (2) | C11—C16 | 1.392 (3) |
N1—C4 | 1.485 (2) | C11—C12 | 1.403 (2) |
C1—C1i | 1.512 (3) | C12—C13 | 1.389 (3) |
C1—C2 | 1.516 (3) | C13—C14 | 1.386 (3) |
C1—H1A | 1.0000 | C13—H13 | 0.9500 |
C2—C3 | 1.531 (3) | C14—C15 | 1.390 (3) |
C2—H2A | 0.9900 | C14—H14 | 0.9500 |
C2—H2B | 0.9900 | C15—C16 | 1.396 (3) |
C3—C3i | 1.530 (4) | C15—C17 | 1.512 (3) |
C3—H3A | 0.9900 | C16—H16 | 0.9500 |
C3—H3B | 0.9900 | C17—H17A | 0.9800 |
C4—N1i | 1.485 (2) | C17—H17B | 0.9800 |
C4—H4 | 0.9900 | C17—H17C | 0.9800 |
C12—O1—H1 | 105 (2) | N1—C5—H5B | 109.2 |
C1—N1—C5 | 112.75 (14) | C11—C5—H5B | 109.2 |
C1—N1—C4 | 105.47 (13) | H5A—C5—H5B | 107.9 |
C5—N1—C4 | 113.58 (14) | C16—C11—C12 | 118.61 (17) |
N1—C1—C1i | 101.79 (11) | C16—C11—C5 | 120.55 (15) |
N1—C1—C2 | 117.60 (15) | C12—C11—C5 | 120.78 (16) |
C1i—C1—C2 | 110.66 (14) | O1—C12—C13 | 119.01 (16) |
N1—C1—H1A | 108.8 | O1—C12—C11 | 121.19 (17) |
C1i—C1—H1A | 108.8 | C13—C12—C11 | 119.79 (17) |
C2—C1—H1A | 108.8 | C14—C13—C12 | 120.22 (17) |
C1—C2—C3 | 108.07 (17) | C14—C13—H13 | 119.9 |
C1—C2—H2A | 110.1 | C12—C13—H13 | 119.9 |
C3—C2—H2A | 110.1 | C13—C14—C15 | 121.48 (18) |
C1—C2—H2B | 110.1 | C13—C14—H14 | 119.3 |
C3—C2—H2B | 110.1 | C15—C14—H14 | 119.3 |
H2A—C2—H2B | 108.4 | C14—C15—C16 | 117.54 (18) |
C3i—C3—C2 | 112.71 (18) | C14—C15—C17 | 122.16 (19) |
C3i—C3—H3A | 109.0 | C16—C15—C17 | 120.28 (18) |
C2—C3—H3A | 109.0 | C11—C16—C15 | 122.30 (17) |
C3i—C3—H3B | 109.0 | C11—C16—H16 | 118.8 |
C2—C3—H3B | 109.0 | C15—C16—H16 | 118.8 |
H3A—C3—H3B | 107.8 | C15—C17—H17A | 109.5 |
N1i—C4—N1 | 106.00 (19) | C15—C17—H17B | 109.5 |
N1i—C4—H4 | 110.5 | H17A—C17—H17B | 109.5 |
N1—C4—H4 | 110.5 | C15—C17—H17C | 109.5 |
N1—C5—C11 | 112.24 (14) | H17A—C17—H17C | 109.5 |
N1—C5—H5A | 109.2 | H17B—C17—H17C | 109.5 |
C11—C5—H5A | 109.2 | ||
C5—N1—C1—C1i | 160.26 (17) | C16—C11—C12—O1 | 176.16 (15) |
C4—N1—C1—C1i | 35.78 (19) | C5—C11—C12—O1 | −1.1 (2) |
C5—N1—C1—C2 | −78.7 (2) | C16—C11—C12—C13 | −2.7 (2) |
C4—N1—C1—C2 | 156.83 (15) | C5—C11—C12—C13 | 180.00 (15) |
N1—C1—C2—C3 | −175.55 (19) | O1—C12—C13—C14 | −176.61 (17) |
C1i—C1—C2—C3 | −59.2 (2) | C11—C12—C13—C14 | 2.3 (3) |
C1—C2—C3—C3i | 53.8 (3) | C12—C13—C14—C15 | −0.4 (3) |
C1—N1—C4—N1i | −14.09 (8) | C13—C14—C15—C16 | −0.9 (3) |
C5—N1—C4—N1i | −138.05 (15) | C13—C14—C15—C17 | −179.83 (18) |
C1—N1—C5—C11 | 170.22 (14) | C12—C11—C16—C15 | 1.4 (3) |
C4—N1—C5—C11 | −69.88 (17) | C5—C11—C16—C15 | 178.62 (16) |
N1—C5—C11—C16 | 144.70 (16) | C14—C15—C16—C11 | 0.5 (3) |
N1—C5—C11—C12 | −38.1 (2) | C17—C15—C16—C11 | 179.38 (17) |
Symmetry code: (i) −x+1, −y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 1.03 (4) | 1.73 (4) | 2.667 (2) | 150 (3) |
C4—H4···O1ii | 0.99 | 2.63 | 3.3749 (13) | 133 |
C5—H5B···O1iii | 0.99 | 2.63 | 3.522 (2) | 150 |
Symmetry codes: (ii) −x+1, −y+1, z; (iii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C23H30N2O2 |
Mr | 366.49 |
Crystal system, space group | Orthorhombic, P21212 |
Temperature (K) | 173 |
a, b, c (Å) | 18.5417 (9), 6.0597 (4), 8.9415 (5) |
V (Å3) | 1004.64 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.31 × 0.27 × 0.12 |
Data collection | |
Diffractometer | STOE IPDS II two-circle- diffractometer |
Absorption correction | Multi-scan (X-AREA; Stoe & Cie, 2001) |
Tmin, Tmax | 0.976, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12723, 2168, 2058 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.636 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.090, 1.04 |
No. of reflections | 2168 |
No. of parameters | 129 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.14, −0.13 |
Computer programs: X-AREA (Stoe & Cie, 2001), X-RED32 (Stoe & Cie, 2001), SHELXS97 (Sheldrick, 2008), SHELXL2012 (Sheldrick, 2008), XP in SHELXTL-Plus (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 1.03 (4) | 1.73 (4) | 2.667 (2) | 150 (3) |
C4—H4···O1i | 0.99 | 2.63 | 3.3749 (13) | 132.6 |
C5—H5B···O1ii | 0.99 | 2.63 | 3.522 (2) | 150.0 |
Symmetry codes: (i) −x+1, −y+1, z; (ii) x, y−1, z. |
Acknowledgements
We acknowledge the Dirección de Investigaciones, Sede Bogotá (DIB) y Sede Manizales (DIMA) de la Universidad Nacional de Colombia, for financial support of this work
References
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Chiral 1,3-diazaheterocyclic-bridged bis(phenols) form stable complexes with several metals and are of interest as ligands to metal complexes because they produce asymmetric coordination compounds (Xu et al., 2007; Kober et al., 2012) and therefore may be involved in enantioselective catalysis.
The title compound (I) was synthesized in a one-step reaction between the chiral macrocyclic aminal (2R,7R)-1,8,10,12-tetraazatetracyclo[8.3.118,12.02,7]pentadecane and p-cresol. Single crystals of were obtained by recrystallization from CHCl3 solution.
The molecular structure and atom-numbering scheme for (I) are shown in Fig. 1. The bond lengths and angles are within normal ranges (Allen et al., 1987) and are comparable with those reported previously reported racemate (Rivera et al., 2009). The space group, of the title enantiomer, P21212, differs from that of the racemate which was triclinic, P-1. (Rivera et al., 2009).
The crystal structure of (I) shows two intramolecular hydrogen bonds generating rings with graph-set motif S(6) (Bernstein et al., 1995) (Table 1). In the crystal, molecules are linked via non-classical intermolecular C—H···O interactions, which stack the molecules along the b axis.