organic compounds
2-[1′-(Benzyloxy)spiro[indane-1,2′-pyrrolidine]-5′-yl]acetonitrile
aDepartamento de Química, Facultad de Ciencias, Universidad del Valle, Apartado 25360, Santiago de Cali, Colombia, and bInstituto de Física de São Carlos, IFSC, Universidade de São Paulo, USP, São Carlos, SP, Brazil
*Correspondence e-mail: rodimo26@yahoo.es
In the title compound, C21H22N2O, the planes of the two six-membered rings make a dihedral angle of 89.51 (7)°. The pyrrolidine ring has a puckering amplitude q2 = 0.418 (3) and a pseudo-rotation phase angle φ2 = −166.8 (5), adopting a twist conformation (T). The other five-membered ring has a puckering amplitude q2 = 0.247 (2) and a pseudo-rotation phase angle φ2 = −173.7 (5), adopting an with the CH2 atom adjacent to the C atom common with the pyrrolidine ring as the flap. In the crystal, molecules are linked via C—H⋯N, enclosing R22(20) rings, forming chains propagating along [100]. The acetonitrile group is disordered over two positions and was refined with a fixed occupancy ratio of 0.56:0.44.
Related literature
For radical et al. (2004); Dake (2006). For cephalotaxine synthesis, see: Paudler et al. (1963); Planas et al. (2004). For with antileukemic activity, see: Benderra et al. (1998); Kantarjian et al. (2001); Lévy et al. (2006). For pyrrolidine properties, see: Chen et al. (2012); Boyd et al. (1999). For tandem reactions under radical conditions, see: Jaramillo-Gómez et al. (2006). For bond-length data, see: Allen et al. (1987). For hydrogen bonding, see: Nardelli (1995) and for hydrogen-bond motifs, see: Etter (1990). For ring torsion angles, see: Cremer & Pople (1975).
of 1-azaspiro compounds, see: El BialyExperimental
Crystal data
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Data collection: COLLECT (Nonius, 2000); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
10.1107/S1600536813017674/hg5325sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813017674/hg5325Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813017674/hg5325Isup3.cml
The reagents and solvents for the synthesis were obtained from the Aldrich Chemical Co., and were used without additional purification. A solution of 6-(benzyloxyimino)-8-(2-iodophenyl)oct-2-enenitrile (II) (129 mg, 0.29 mmol), 2,2'-azobisisobutyronitrile (AIBN, 14 mg, 0.09 mmol) and tributyltin hydride (n-Bu3SnH, 0.09 ml, 0.35 mmol) in cyclohexane (Cy, 13 mL) was degassed for 1 h by bubbling dry argon, and subsequently stirred at 353 K for 7 h. After cooling to room temperature the solvent was removed under reduced pressure and the crude product treated with a mixture of 20% KF aqueous solution (2 mL) and ethyl acetate (2 mL), stirring overnight. The organic layer was separated, dried with anhydrous Na2SO4 and filtered over silica gel. The purification was carried out by flash
with 60-95% benzene/hexane (gradient 5%) to afford a mixture of two IIIa and IIIb (59 mg, 65%) as yellow oil. By addition of hexane to this oil, white crystals suitable for X-ray diffraction, fell down [20 mg, 21%, m.p. 372 (1) K] of the diastereomeric spirocycle trans-IIIa suitable for X-ray analysis. Elemental Analysis: Calculated: C 79.20, H 6.98, N 8.80; Found: C 79.25, H 6.73, N 8.85.The H-atoms were positioned geometrically [C—H= 0.93 Å for aromatic and C—H= 0.97 Å for methylene, and with Uiso(H) (1.2 and 1.5 times Ueq of the parent atom respectively]. The H12 atom was found in difference Fourier maps an its coordinates were refined freely.
Data collection: COLLECT (Nonius, 2000); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 2012).C21H22N2O | Z = 2 |
Mr = 318.41 | F(000) = 340 |
Triclinic, P1 | Dx = 1.184 Mg m−3 |
Hall symbol: -P 1 | Melting point: 372(1) K |
a = 9.1688 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 10.0800 (4) Å | Cell parameters from 5157 reflections |
c = 11.4141 (6) Å | θ = 2.9–25.7° |
α = 98.826 (2)° | µ = 0.07 mm−1 |
β = 108.777 (2)° | T = 295 K |
γ = 110.403 (4)° | Block, white |
V = 893.17 (7) Å3 | 0.29 × 0.25 × 0.15 mm |
Nonius KappaCCD diffractometer | 2307 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.063 |
Graphite monochromator | θmax = 26.4°, θmin = 3.0° |
CCD rotation images, thick slices scans | h = −11→10 |
6429 measured reflections | k = −12→12 |
3617 independent reflections | l = −14→14 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.059 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.191 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | w = 1/[σ2(Fo2) + (0.0894P)2 + 0.0489P] where P = (Fo2 + 2Fc2)/3 |
3617 reflections | (Δ/σ)max < 0.001 |
249 parameters | Δρmax = 0.11 e Å−3 |
3 restraints | Δρmin = −0.13 e Å−3 |
C21H22N2O | γ = 110.403 (4)° |
Mr = 318.41 | V = 893.17 (7) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.1688 (4) Å | Mo Kα radiation |
b = 10.0800 (4) Å | µ = 0.07 mm−1 |
c = 11.4141 (6) Å | T = 295 K |
α = 98.826 (2)° | 0.29 × 0.25 × 0.15 mm |
β = 108.777 (2)° |
Nonius KappaCCD diffractometer | 2307 reflections with I > 2σ(I) |
6429 measured reflections | Rint = 0.063 |
3617 independent reflections |
R[F2 > 2σ(F2)] = 0.059 | 3 restraints |
wR(F2) = 0.191 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.11 e Å−3 |
3617 reflections | Δρmin = −0.13 e Å−3 |
249 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.48268 (14) | 0.93003 (12) | 0.30050 (11) | 0.0770 (4) | |
N1 | 0.46487 (19) | 0.78319 (16) | 0.30577 (14) | 0.0779 (4) | |
C1 | 0.2926 (2) | 0.66924 (19) | 0.20916 (18) | 0.0789 (5) | |
C2 | 0.1560 (2) | 0.72661 (18) | 0.18692 (19) | 0.0784 (5) | |
C3 | 0.0707 (3) | 0.7469 (2) | 0.2642 (2) | 0.1021 (7) | |
H3 | 0.0910 | 0.7198 | 0.3401 | 0.123* | |
C4 | −0.0441 (3) | 0.8075 (3) | 0.2276 (3) | 0.1190 (8) | |
H4 | −0.1011 | 0.8212 | 0.2794 | 0.143* | |
C5 | −0.0749 (3) | 0.8472 (3) | 0.1174 (3) | 0.1224 (9) | |
H5 | −0.1503 | 0.8905 | 0.0955 | 0.147* | |
C6 | 0.0039 (3) | 0.8241 (3) | 0.0373 (2) | 0.1114 (8) | |
H6 | −0.0198 | 0.8491 | −0.0396 | 0.134* | |
C7 | 0.1202 (2) | 0.7625 (2) | 0.07324 (19) | 0.0878 (5) | |
C8 | 0.2196 (3) | 0.7262 (3) | 0.0030 (2) | 0.1071 (7) | |
H8A | 0.3110 | 0.8155 | 0.0083 | 0.128* | |
H8B | 0.1470 | 0.6717 | −0.0876 | 0.128* | |
C9 | 0.2901 (3) | 0.6305 (2) | 0.07358 (19) | 0.0958 (6) | |
H9A | 0.2181 | 0.5260 | 0.0281 | 0.115* | |
H9B | 0.4041 | 0.6519 | 0.0789 | 0.115* | |
C10 | 0.2684 (4) | 0.5431 (3) | 0.2722 (3) | 0.1171 (8) | |
H10A | 0.1538 | 0.5014 | 0.2686 | 0.141* | |
H10B | 0.2867 | 0.4648 | 0.2269 | 0.141* | |
C11 | 0.3975 (4) | 0.6097 (3) | 0.4117 (3) | 0.1284 (10) | |
H11A | 0.3433 | 0.5835 | 0.4703 | 0.154* | |
H11B | 0.4862 | 0.5751 | 0.4251 | 0.154* | |
C12 | 0.4700 (4) | 0.7747 (3) | 0.4335 (2) | 0.1040 (7) | |
C15 | 0.6189 (2) | 0.9965 (2) | 0.2623 (2) | 0.0990 (7) | |
H15A | 0.5962 | 0.9367 | 0.1778 | 0.119* | |
H15B | 0.7253 | 1.0050 | 0.3246 | 0.119* | |
C16 | 0.6290 (2) | 1.1473 (2) | 0.2575 (2) | 0.0853 (5) | |
C17 | 0.4913 (2) | 1.1636 (2) | 0.1765 (2) | 0.1015 (7) | |
H17 | 0.3909 | 1.0799 | 0.1244 | 0.122* | |
C18 | 0.5008 (3) | 1.3020 (2) | 0.1720 (2) | 0.1035 (7) | |
H18 | 0.4072 | 1.3108 | 0.1167 | 0.124* | |
C19 | 0.6473 (3) | 1.4269 (2) | 0.2482 (2) | 0.0987 (6) | |
H19 | 0.6535 | 1.5203 | 0.2450 | 0.118* | |
C20 | 0.7837 (3) | 1.4125 (2) | 0.3289 (2) | 0.0985 (7) | |
H20 | 0.8833 | 1.4968 | 0.3811 | 0.118* | |
C21 | 0.7759 (2) | 1.2749 (2) | 0.3340 (2) | 0.0913 (6) | |
H21 | 0.8704 | 1.2674 | 0.3896 | 0.110* | |
N2A | 0.8984 (16) | 0.801 (2) | 0.4992 (18) | 0.115 (3) | 0.44 |
C13A | 0.6184 (11) | 0.8347 (10) | 0.5469 (9) | 0.097 (2) | 0.44 |
H131 | 0.5934 | 0.8012 | 0.6163 | 0.116* | 0.44 |
H132 | 0.6644 | 0.9421 | 0.5727 | 0.116* | 0.44 |
C14A | 0.7383 (11) | 0.7889 (10) | 0.5243 (10) | 0.088 (2) | 0.44 |
N2B | 0.8463 (15) | 0.7591 (16) | 0.5103 (16) | 0.131 (3) | 0.56 |
C13B | 0.6718 (10) | 0.8878 (9) | 0.5325 (7) | 0.1077 (18) | 0.56 |
H133 | 0.6979 | 0.9843 | 0.5184 | 0.129* | 0.56 |
H134 | 0.6827 | 0.9002 | 0.6214 | 0.129* | 0.56 |
C14B | 0.7995 (10) | 0.8369 (8) | 0.5167 (8) | 0.0904 (18) | 0.56 |
H12 | 0.400 (3) | 0.821 (2) | 0.454 (2) | 0.109 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0734 (7) | 0.0694 (7) | 0.0904 (8) | 0.0416 (6) | 0.0252 (6) | 0.0203 (6) |
N1 | 0.0945 (10) | 0.0754 (9) | 0.0749 (9) | 0.0552 (8) | 0.0267 (8) | 0.0232 (7) |
C1 | 0.0921 (12) | 0.0670 (10) | 0.0862 (12) | 0.0423 (9) | 0.0369 (10) | 0.0232 (8) |
C2 | 0.0791 (10) | 0.0624 (9) | 0.0939 (13) | 0.0315 (8) | 0.0337 (9) | 0.0232 (8) |
C3 | 0.1121 (15) | 0.0891 (13) | 0.1370 (18) | 0.0530 (12) | 0.0723 (14) | 0.0453 (13) |
C4 | 0.1025 (16) | 0.1018 (17) | 0.175 (3) | 0.0558 (14) | 0.0705 (17) | 0.0389 (17) |
C5 | 0.0930 (15) | 0.1002 (16) | 0.161 (3) | 0.0525 (13) | 0.0300 (16) | 0.0244 (17) |
C6 | 0.1009 (15) | 0.0993 (16) | 0.1069 (16) | 0.0462 (13) | 0.0078 (13) | 0.0261 (13) |
C7 | 0.0812 (11) | 0.0782 (11) | 0.0837 (12) | 0.0311 (9) | 0.0157 (9) | 0.0162 (9) |
C8 | 0.1162 (15) | 0.1236 (18) | 0.0698 (12) | 0.0529 (13) | 0.0265 (10) | 0.0182 (11) |
C9 | 0.1021 (13) | 0.0907 (13) | 0.0840 (13) | 0.0428 (11) | 0.0335 (11) | 0.0031 (10) |
C10 | 0.157 (2) | 0.0902 (15) | 0.156 (2) | 0.0813 (15) | 0.084 (2) | 0.0627 (15) |
C11 | 0.203 (3) | 0.153 (2) | 0.135 (2) | 0.135 (2) | 0.107 (2) | 0.0954 (19) |
C12 | 0.1553 (19) | 0.1313 (18) | 0.0756 (12) | 0.1116 (16) | 0.0472 (12) | 0.0407 (11) |
C15 | 0.0703 (11) | 0.0884 (14) | 0.1379 (18) | 0.0410 (10) | 0.0376 (11) | 0.0254 (12) |
C16 | 0.0615 (9) | 0.0775 (11) | 0.1134 (15) | 0.0298 (8) | 0.0346 (9) | 0.0204 (10) |
C17 | 0.0653 (10) | 0.0742 (12) | 0.1411 (18) | 0.0269 (9) | 0.0232 (11) | 0.0170 (11) |
C18 | 0.0837 (12) | 0.0872 (14) | 0.1346 (18) | 0.0407 (11) | 0.0354 (12) | 0.0290 (12) |
C19 | 0.1060 (15) | 0.0746 (12) | 0.1174 (16) | 0.0322 (11) | 0.0545 (14) | 0.0286 (11) |
C20 | 0.0870 (13) | 0.0801 (13) | 0.1029 (15) | 0.0109 (10) | 0.0380 (12) | 0.0208 (11) |
C21 | 0.0659 (10) | 0.0980 (14) | 0.0982 (14) | 0.0245 (10) | 0.0316 (10) | 0.0269 (11) |
N2A | 0.096 (7) | 0.119 (8) | 0.122 (5) | 0.060 (6) | 0.022 (5) | 0.029 (5) |
C13A | 0.146 (5) | 0.111 (6) | 0.080 (3) | 0.097 (4) | 0.048 (2) | 0.041 (3) |
C14A | 0.086 (5) | 0.081 (5) | 0.090 (4) | 0.042 (4) | 0.020 (4) | 0.024 (4) |
N2B | 0.109 (7) | 0.124 (8) | 0.146 (6) | 0.070 (6) | 0.026 (5) | 0.011 (5) |
C13B | 0.171 (3) | 0.120 (5) | 0.060 (2) | 0.103 (3) | 0.032 (3) | 0.031 (3) |
C14B | 0.090 (5) | 0.080 (4) | 0.089 (3) | 0.046 (3) | 0.013 (3) | 0.017 (3) |
O1—C15 | 1.434 (2) | C11—H11A | 0.9700 |
O1—N1 | 1.4444 (17) | C11—H11B | 0.9700 |
N1—C12 | 1.460 (3) | C12—C13A | 1.395 (9) |
N1—C1 | 1.502 (2) | C12—C13B | 1.670 (8) |
C1—C2 | 1.520 (2) | C12—H12 | 0.97 (2) |
C1—C9 | 1.528 (3) | C15—C16 | 1.501 (3) |
C1—C10 | 1.540 (3) | C15—H15A | 0.9700 |
C2—C7 | 1.369 (3) | C15—H15B | 0.9700 |
C2—C3 | 1.390 (3) | C16—C17 | 1.384 (3) |
C3—C4 | 1.378 (3) | C16—C21 | 1.387 (3) |
C3—H3 | 0.9300 | C17—C18 | 1.377 (3) |
C4—C5 | 1.351 (4) | C17—H17 | 0.9300 |
C4—H4 | 0.9300 | C18—C19 | 1.371 (3) |
C5—C6 | 1.375 (4) | C18—H18 | 0.9300 |
C5—H5 | 0.9300 | C19—C20 | 1.364 (3) |
C6—C7 | 1.396 (3) | C19—H19 | 0.9300 |
C6—H6 | 0.9300 | C20—C21 | 1.374 (3) |
C7—C8 | 1.491 (3) | C20—H20 | 0.9300 |
C8—C9 | 1.529 (3) | C21—H21 | 0.9300 |
C8—H8A | 0.9700 | N2A—C14A | 1.553 (17) |
C8—H8B | 0.9700 | C13A—C14A | 1.410 (16) |
C9—H9A | 0.9700 | C13A—H131 | 0.9700 |
C9—H9B | 0.9700 | C13A—H132 | 0.9700 |
C10—C11 | 1.514 (4) | N2B—C14B | 1.021 (17) |
C10—H10A | 0.9700 | C13B—C14B | 1.481 (13) |
C10—H10B | 0.9700 | C13B—H133 | 0.9700 |
C11—C12 | 1.505 (4) | C13B—H134 | 0.9700 |
C15—O1—N1 | 109.50 (12) | C10—C11—H11B | 110.7 |
O1—N1—C12 | 107.46 (13) | H11A—C11—H11B | 108.8 |
O1—N1—C1 | 110.06 (12) | C13A—C12—N1 | 124.5 (4) |
C12—N1—C1 | 106.19 (16) | C13A—C12—C11 | 105.6 (4) |
N1—C1—C2 | 112.94 (14) | N1—C12—C11 | 101.52 (17) |
N1—C1—C9 | 111.30 (15) | N1—C12—C13B | 103.0 (3) |
C2—C1—C9 | 101.77 (16) | C11—C12—C13B | 122.4 (3) |
N1—C1—C10 | 100.66 (17) | C13A—C12—H12 | 103.9 (13) |
C2—C1—C10 | 115.07 (17) | N1—C12—H12 | 107.9 (12) |
C9—C1—C10 | 115.58 (17) | C11—C12—H12 | 113.9 (13) |
C7—C2—C3 | 119.32 (19) | C13B—C12—H12 | 106.6 (13) |
C7—C2—C1 | 111.24 (17) | O1—C15—C16 | 106.64 (14) |
C3—C2—C1 | 129.44 (18) | O1—C15—H15A | 110.4 |
C4—C3—C2 | 119.6 (2) | C16—C15—H15A | 110.4 |
C4—C3—H3 | 120.2 | O1—C15—H15B | 110.4 |
C2—C3—H3 | 120.2 | C16—C15—H15B | 110.4 |
C5—C4—C3 | 120.8 (3) | H15A—C15—H15B | 108.6 |
C5—C4—H4 | 119.6 | C17—C16—C21 | 117.70 (19) |
C3—C4—H4 | 119.6 | C17—C16—C15 | 121.00 (17) |
C4—C5—C6 | 120.7 (2) | C21—C16—C15 | 121.30 (18) |
C4—C5—H5 | 119.6 | C18—C17—C16 | 120.93 (19) |
C6—C5—H5 | 119.6 | C18—C17—H17 | 119.5 |
C5—C6—C7 | 118.9 (2) | C16—C17—H17 | 119.5 |
C5—C6—H6 | 120.5 | C19—C18—C17 | 120.5 (2) |
C7—C6—H6 | 120.5 | C19—C18—H18 | 119.7 |
C2—C7—C6 | 120.5 (2) | C17—C18—H18 | 119.7 |
C2—C7—C8 | 110.62 (18) | C20—C19—C18 | 119.1 (2) |
C6—C7—C8 | 128.8 (2) | C20—C19—H19 | 120.4 |
C7—C8—C9 | 103.76 (17) | C18—C19—H19 | 120.4 |
C7—C8—H8A | 111.0 | C19—C20—C21 | 120.88 (19) |
C9—C8—H8A | 111.0 | C19—C20—H20 | 119.6 |
C7—C8—H8B | 111.0 | C21—C20—H20 | 119.6 |
C9—C8—H8B | 111.0 | C20—C21—C16 | 120.8 (2) |
H8A—C8—H8B | 109.0 | C20—C21—H21 | 119.6 |
C1—C9—C8 | 106.36 (16) | C16—C21—H21 | 119.6 |
C1—C9—H9A | 110.5 | C12—C13A—C14A | 109.0 (8) |
C8—C9—H9A | 110.5 | C12—C13A—H131 | 109.9 |
C1—C9—H9B | 110.5 | C14A—C13A—H131 | 109.9 |
C8—C9—H9B | 110.5 | C12—C13A—H132 | 109.9 |
H9A—C9—H9B | 108.6 | C14A—C13A—H132 | 109.9 |
C11—C10—C1 | 106.99 (19) | H131—C13A—H132 | 108.3 |
C11—C10—H10A | 110.3 | C13A—C14A—N2A | 158.1 (9) |
C1—C10—H10A | 110.3 | C14B—C13B—C12 | 115.0 (6) |
C11—C10—H10B | 110.3 | C14B—C13B—H133 | 108.5 |
C1—C10—H10B | 110.3 | C12—C13B—H133 | 108.5 |
H10A—C10—H10B | 108.6 | C14B—C13B—H134 | 108.5 |
C12—C11—C10 | 105.04 (17) | C12—C13B—H134 | 108.5 |
C12—C11—H11A | 110.7 | H133—C13B—H134 | 107.5 |
C10—C11—H11A | 110.7 | N2B—C14B—C13B | 152.4 (10) |
C12—C11—H11B | 110.7 | ||
C15—O1—N1—C12 | 127.02 (18) | C2—C1—C10—C11 | −105.6 (2) |
C15—O1—N1—C1 | −117.76 (16) | C9—C1—C10—C11 | 136.2 (2) |
O1—N1—C1—C2 | −31.15 (19) | C1—C10—C11—C12 | 10.2 (3) |
C12—N1—C1—C2 | 84.87 (17) | O1—N1—C12—C13A | −78.5 (5) |
O1—N1—C1—C9 | 82.60 (17) | C1—N1—C12—C13A | 163.7 (5) |
C12—N1—C1—C9 | −161.38 (16) | O1—N1—C12—C11 | 163.27 (17) |
O1—N1—C1—C10 | −154.38 (14) | C1—N1—C12—C11 | 45.5 (2) |
C12—N1—C1—C10 | −38.36 (19) | O1—N1—C12—C13B | −69.3 (3) |
N1—C1—C2—C7 | 102.02 (18) | C1—N1—C12—C13B | 173.0 (3) |
C9—C1—C2—C7 | −17.40 (19) | C10—C11—C12—C13A | −164.3 (5) |
C10—C1—C2—C7 | −143.16 (19) | C10—C11—C12—N1 | −33.3 (2) |
N1—C1—C2—C3 | −77.2 (2) | C10—C11—C12—C13B | −146.9 (4) |
C9—C1—C2—C3 | 163.37 (19) | N1—O1—C15—C16 | 179.41 (14) |
C10—C1—C2—C3 | 37.6 (3) | O1—C15—C16—C17 | −59.3 (3) |
C7—C2—C3—C4 | −2.2 (3) | O1—C15—C16—C21 | 120.56 (19) |
C1—C2—C3—C4 | 176.98 (19) | C21—C16—C17—C18 | 0.3 (3) |
C2—C3—C4—C5 | 0.1 (4) | C15—C16—C17—C18 | −179.8 (2) |
C3—C4—C5—C6 | 1.9 (4) | C16—C17—C18—C19 | −0.3 (4) |
C4—C5—C6—C7 | −1.7 (4) | C17—C18—C19—C20 | 0.0 (4) |
C3—C2—C7—C6 | 2.4 (3) | C18—C19—C20—C21 | 0.2 (3) |
C1—C2—C7—C6 | −176.96 (17) | C19—C20—C21—C16 | −0.1 (3) |
C3—C2—C7—C8 | −177.52 (18) | C17—C16—C21—C20 | −0.2 (3) |
C1—C2—C7—C8 | 3.2 (2) | C15—C16—C21—C20 | −179.98 (18) |
C5—C6—C7—C2 | −0.4 (3) | N1—C12—C13A—C14A | −49.7 (7) |
C5—C6—C7—C8 | 179.4 (2) | C11—C12—C13A—C14A | 66.6 (6) |
C2—C7—C8—C9 | 12.6 (2) | C13B—C12—C13A—C14A | −73.4 (17) |
C6—C7—C8—C9 | −167.3 (2) | C12—C13A—C14A—N2A | 105 (3) |
N1—C1—C9—C8 | −96.19 (19) | C13A—C12—C13B—C14B | 93.7 (19) |
C2—C1—C9—C8 | 24.4 (2) | N1—C12—C13B—C14B | −66.5 (5) |
C10—C1—C9—C8 | 149.8 (2) | C11—C12—C13B—C14B | 46.4 (6) |
C7—C8—C9—C1 | −23.2 (2) | C12—C13B—C14B—N2B | −51 (3) |
N1—C1—C10—C11 | 16.2 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C21—H21···N2Bi | 0.93 | 2.61 | 3.511 (15) | 164 |
C21—H21···N2Ai | 0.93 | 2.48 | 3.390 (18) | 168 |
C13B—H134···O1ii | 0.97 | 2.87 | 3.389 (9) | 115 |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C21H22N2O |
Mr | 318.41 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 9.1688 (4), 10.0800 (4), 11.4141 (6) |
α, β, γ (°) | 98.826 (2), 108.777 (2), 110.403 (4) |
V (Å3) | 893.17 (7) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.29 × 0.25 × 0.15 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6429, 3617, 2307 |
Rint | 0.063 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.059, 0.191, 1.05 |
No. of reflections | 3617 |
No. of parameters | 249 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.11, −0.13 |
Computer programs: COLLECT (Nonius, 2000), DENZO and SCALEPACK (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2006), WinGX (Farrugia, 2012).
D—H···A | D—H | H···A | D···A | D—H···A |
C21—H21···N2Bi | 0.93 | 2.61 | 3.511 (15) | 164.4 |
C21—H21···N2Ai | 0.93 | 2.48 | 3.390 (18) | 168.0 |
C13B—H134···O1ii | 0.97 | 2.87 | 3.389 (9) | 114.5 |
Symmetry codes: (i) −x+2, −y+2, −z+1; (ii) −x+1, −y+2, −z+1. |
Acknowledgements
RMF and LMJG are grateful to the Universidad del Valle, Colombia, for partial financial support.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, 1'-(benzyloxy)-5'-cyanomethyl-2,3-dihydrospiro [inden-1,2'-pyrrolidine], (trans-IIIa), belongs to the family of spirocyclic compounds. It is worthwhile to stand out the natural occurring and synthetic cyclic alkaloids which contain a nitrogen atom adjacent to the spiro carbon. Of special interest are the structures exhibiting the 1-azaspiro[4.4]nonane (I) system (El Bialy et al., 2004) which represents the central core of the cephalotaxine, a natural occurring product isolated from evergreen plum yews of the genus Cephalotaxus (Paudler et al., 1963; Planas et al., 2004), whose ester derivatives as homoharringtonine exhibited a pronounced antileukemic activity (Benderra et al., 1998; Kantarjian et al., 2001; Lévy et al., 2006). Pyrrolidine is a heterocyclic amine used as building block or base in pharmaceutical and fine chemical manufacturing (Boyd et al., 1999; Chen et al., 2012). Therefore, considerable attention has been focused toward the synthesis of molecules with the embedded 1-azaspiro [4.4]nonane (I) system in their structures, using mainly ionic strategy and only scarce examples via radical cyclisation to form out them (El Bialy et al., 2004; Dake, 2006).
Continuing with our current interest in applying tandem reactions under radical conditions, with the participation of aryl and neutral alkyl oxyaminyl radicals (Jaramillo-Gómez et al. 2006), we are reporting here, the synthesis of the azaspirocyclic 1'-(benzyloxy)-5'-cyanomethyl-2,3-dihydrospiro [inden-1,2'-pyrrolidine] (III), as a mixture of the diastereomers cis and trans, being able to crystallize in the pure form, the isomer trans IIIa. The interesting azaspiro [4.4] nonano (I) framework embedded in (III) was obtained in one single synthetic step, from the oxime ether 6-(benzyloxy-imino)-8-(2-iodophenyl)oct-2-enenitrile (II), through a sequential process of two closures 5-exo under standard radical conditions, (scheme 2). The molecular structure of (trans IIIa) is shown in Fig. 1.
The title compound crystallizes in the monoclinic space group P21/c. The two phenyl rings are oriented to each other with a dihedral angle of 89.51 (7)°. Analysis of torsion angles, and least-square plane calculation, indicate that pyrrolidine ring shows a puckering amplitude q2= 0.418 (3) and pseudo-rotation phase angle ϕ2= -166.8 (5) adopting a twist conformation T with the N atom above the mean plane of the ring. In the same way the other five member ring shows a puckering amplitude q2= 0.247 (2) and pseudo-rotation phase angle ϕ2= -173.7 (5) adopting an envelope conformation E with the atom C9 below the mean plane of the ring (Cremer & Pople, 1975). The N-O bond length is close to the mean value [1.463 (12) Å] reported in the literature (Allen et al., 1987) and the torsion angle formed by the atoms [N1-O1-C15-C16] which links the pyrrolidine and phenyl rings is 179.41 (13)°. The crystal packing reveals that the molecules are linked through a network of weak C—H···N and C—H···O intermolecular interactions (see Table 1, Nardelli, 1995). The C21 atom in the molecule at (x,y,z) donates a proton to N2a y N2b atoms in the molecule at (-x+2,-y+2,-z+1), forming as a result of these interactions R22(20) rings (Etter, 1990). These rings are in turn linked by a weak C-H···O interaction. Indeed, the C23 atom in the molecule at (x,y,z) donates a proton to O1 atom of the molecule at (-x+1,-y+2,-z+1) forming layers parallel to (001) as shown in Fig. 2.