organic compounds
3-[(E)-(Benzyliminiumyl)methyl]-6,8-dichloro-2H-chromen-4-olate
aSchool of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
*Correspondence e-mail: ishi206@u-shizuoka-ken.ac.jp
In the title compound, C17H13Cl2NO2, the H atom of the –OH group is transferred to the N atom of the imine, forming a zwitterion. Thus, there is a intramolecular O⋯H—N, rather than O—H⋯N, hydrogen bond, which forms a six-membered ring.
Related literature
For the biological propertries of similar structures, see: Khan et al. (2009); Tu et al. (2013). For related structures, see: Benaouida et al. (2013); Małecka & Budzisz (2006).
Experimental
Crystal data
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Data collection: WinAFC (Rigaku, 1999); cell WinAFC; data reduction: WinAFC; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
10.1107/S1600536813018072/rn2117sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813018072/rn2117Isup2.hkl
Benzylamine (5 mmol), 6,8-dichloro-3-formylchromone (5 mmol) and 2-picoline borane (5 mmol) were dissolved in a mixture of MeOH-AcOH (10:1, 60 ml) and 2-propanol (20 ml), and stirred overnight at room temperature. Hydrochloric acid (1 M, 20 ml) was added to the reaction mixture, which was then stirred for 30 min. After neutralization with saturated NaHCO3, the mixture was extracted with methylene chloride. The extract was washed with brine, dried over anhydrous Na2SO4 and purified by
on silica gel (n-hexane: ethyl acetate = 3: 1). The eluted fractions were concentrated and filtered off. Layering n-hexane on the filtrate gave single crystals suitable for X-ray diffraction (yield 6%).The carbon-bound hydrogen atoms were placed in geometrical positions [C–H 0.95 to 0.99 Å, Uiso(H) = 1.2Ueq(C)], and refined using a riding model. The hydrogen atom of the OH group was found to be located near N5 of the imine in a difference Fourier map, and refined with distance restraint [N–H 0.88 Å, Uiso(H) = 1.2Ueq(N)].
Data collection: WinAFC (Rigaku, 1999); cell
WinAFC (Rigaku, 1999); data reduction: WinAFC (Rigaku, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are shown as small spheres of arbitrary radius. |
C17H13Cl2NO2 | F(000) = 1376.00 |
Mr = 334.20 | Dx = 1.493 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 25 reflections |
a = 11.312 (5) Å | θ = 15.3–17.4° |
b = 28.284 (8) Å | µ = 0.44 mm−1 |
c = 9.294 (4) Å | T = 100 K |
V = 2973.7 (19) Å3 | Prismatic, yellow |
Z = 8 | 0.40 × 0.40 × 0.30 mm |
Rigaku AFC7R diffractometer | Rint = 0.027 |
ω scans | θmax = 27.5° |
Absorption correction: ψ scan (North et al., 1968) | h = −8→14 |
Tmin = 0.734, Tmax = 0.876 | k = 0→36 |
4921 measured reflections | l = −12→6 |
3411 independent reflections | 3 standard reflections every 150 reflections |
2842 reflections with F2 > 2.0σ(F2) | intensity decay: −0.7% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0484P)2 + 1.5727P] where P = (Fo2 + 2Fc2)/3 |
3411 reflections | (Δ/σ)max = 0.001 |
199 parameters | Δρmax = 0.37 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C17H13Cl2NO2 | V = 2973.7 (19) Å3 |
Mr = 334.20 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 11.312 (5) Å | µ = 0.44 mm−1 |
b = 28.284 (8) Å | T = 100 K |
c = 9.294 (4) Å | 0.40 × 0.40 × 0.30 mm |
Rigaku AFC7R diffractometer | 2842 reflections with F2 > 2.0σ(F2) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.027 |
Tmin = 0.734, Tmax = 0.876 | 3 standard reflections every 150 reflections |
4921 measured reflections | intensity decay: −0.7% |
3411 independent reflections |
R[F2 > 2σ(F2)] = 0.034 | 0 restraints |
wR(F2) = 0.095 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.37 e Å−3 |
3411 reflections | Δρmin = −0.30 e Å−3 |
199 parameters |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.35615 (4) | 0.728872 (14) | 0.62619 (5) | 0.03107 (12) | |
Cl2 | 0.08088 (4) | 0.696080 (16) | 0.16439 (5) | 0.03462 (13) | |
O3 | 0.15191 (10) | 0.59834 (4) | 0.20309 (12) | 0.0270 (3) | |
O4 | 0.39867 (10) | 0.54598 (4) | 0.48567 (12) | 0.0250 (3) | |
N5 | 0.35872 (12) | 0.45877 (5) | 0.35813 (15) | 0.0254 (3) | |
C6 | 0.19963 (14) | 0.62709 (5) | 0.30470 (16) | 0.0225 (3) | |
C7 | 0.27643 (13) | 0.61039 (5) | 0.41191 (16) | 0.0207 (3) | |
C8 | 0.31307 (14) | 0.55972 (5) | 0.41132 (16) | 0.0214 (3) | |
C9 | 0.22286 (14) | 0.70675 (6) | 0.39517 (17) | 0.0250 (4) | |
C10 | 0.32453 (14) | 0.64196 (5) | 0.51118 (16) | 0.0214 (3) | |
C11 | 0.29724 (14) | 0.68935 (5) | 0.50180 (17) | 0.0230 (4) | |
C12 | 0.24579 (14) | 0.53004 (6) | 0.31714 (17) | 0.0232 (4) | |
C13 | 0.45884 (15) | 0.34680 (6) | 0.17648 (18) | 0.0281 (4) | |
C14 | 0.27199 (14) | 0.48304 (6) | 0.29639 (17) | 0.0245 (4) | |
C15 | 0.37317 (15) | 0.40812 (6) | 0.33640 (18) | 0.0266 (4) | |
C16 | 0.17522 (14) | 0.67549 (6) | 0.29714 (17) | 0.0245 (4) | |
C17 | 0.58227 (15) | 0.41186 (8) | 0.01394 (19) | 0.0354 (5) | |
C18 | 0.13558 (14) | 0.55016 (6) | 0.25306 (19) | 0.0262 (4) | |
C19 | 0.59128 (16) | 0.36417 (8) | −0.0169 (2) | 0.0383 (5) | |
C20 | 0.51113 (15) | 0.42726 (6) | 0.12718 (18) | 0.0286 (4) | |
C21 | 0.44961 (13) | 0.39468 (6) | 0.20942 (17) | 0.0226 (4) | |
C22 | 0.52919 (17) | 0.33175 (7) | 0.0642 (2) | 0.0360 (5) | |
H5 | 0.4091 | 0.4738 | 0.4140 | 0.0305* | |
H9 | 0.2052 | 0.7395 | 0.3899 | 0.0300* | |
H10 | 0.3758 | 0.6309 | 0.5848 | 0.0257* | |
H13 | 0.4163 | 0.3243 | 0.2319 | 0.0337* | |
H14 | 0.2230 | 0.4662 | 0.2311 | 0.0294* | |
H15A | 0.2940 | 0.3938 | 0.3233 | 0.0319* | |
H15B | 0.4081 | 0.3943 | 0.4245 | 0.0319* | |
H17 | 0.6247 | 0.4342 | −0.0422 | 0.0425* | |
H18A | 0.1104 | 0.5301 | 0.1713 | 0.0315* | |
H18B | 0.0718 | 0.5495 | 0.3260 | 0.0315* | |
H19 | 0.6402 | 0.3538 | −0.0937 | 0.0459* | |
H20 | 0.5049 | 0.4601 | 0.1479 | 0.0344* | |
H22 | 0.5349 | 0.2990 | 0.0426 | 0.0433* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0410 (3) | 0.0228 (2) | 0.0294 (3) | −0.00185 (17) | −0.00490 (18) | −0.00298 (15) |
Cl2 | 0.0342 (3) | 0.0345 (3) | 0.0352 (3) | 0.00614 (17) | −0.01121 (18) | 0.00487 (18) |
O3 | 0.0296 (6) | 0.0275 (6) | 0.0239 (6) | −0.0012 (5) | −0.0059 (5) | −0.0005 (5) |
O4 | 0.0252 (6) | 0.0244 (6) | 0.0255 (6) | 0.0005 (5) | −0.0039 (5) | 0.0005 (5) |
N5 | 0.0264 (7) | 0.0227 (7) | 0.0272 (7) | −0.0027 (6) | 0.0003 (6) | −0.0041 (6) |
C6 | 0.0212 (8) | 0.0271 (8) | 0.0192 (7) | −0.0011 (6) | 0.0023 (6) | −0.0004 (6) |
C7 | 0.0193 (7) | 0.0227 (8) | 0.0202 (7) | −0.0019 (6) | 0.0033 (6) | 0.0004 (6) |
C8 | 0.0222 (8) | 0.0230 (7) | 0.0191 (7) | −0.0011 (6) | 0.0036 (6) | 0.0008 (6) |
C9 | 0.0257 (8) | 0.0228 (8) | 0.0265 (8) | 0.0020 (7) | 0.0049 (7) | 0.0025 (7) |
C10 | 0.0210 (8) | 0.0239 (8) | 0.0193 (7) | −0.0013 (6) | 0.0015 (6) | 0.0013 (6) |
C11 | 0.0238 (8) | 0.0230 (8) | 0.0222 (8) | −0.0023 (6) | 0.0033 (7) | −0.0013 (6) |
C12 | 0.0225 (8) | 0.0260 (8) | 0.0210 (8) | −0.0019 (7) | 0.0015 (7) | −0.0016 (6) |
C13 | 0.0261 (8) | 0.0300 (9) | 0.0281 (9) | 0.0022 (7) | −0.0025 (7) | −0.0038 (7) |
C14 | 0.0235 (8) | 0.0285 (8) | 0.0215 (8) | −0.0035 (7) | 0.0034 (7) | −0.0031 (6) |
C15 | 0.0284 (9) | 0.0219 (8) | 0.0295 (9) | −0.0015 (7) | 0.0053 (7) | −0.0014 (7) |
C16 | 0.0221 (8) | 0.0287 (8) | 0.0226 (8) | 0.0027 (7) | 0.0002 (7) | 0.0052 (6) |
C17 | 0.0203 (9) | 0.0581 (12) | 0.0278 (9) | −0.0083 (8) | 0.0005 (7) | 0.0030 (9) |
C18 | 0.0248 (8) | 0.0273 (8) | 0.0267 (8) | −0.0026 (7) | −0.0024 (7) | −0.0032 (7) |
C19 | 0.0223 (9) | 0.0652 (14) | 0.0272 (9) | 0.0032 (9) | 0.0012 (7) | −0.0125 (9) |
C20 | 0.0221 (8) | 0.0345 (9) | 0.0294 (9) | −0.0055 (7) | −0.0018 (7) | −0.0007 (7) |
C21 | 0.0168 (7) | 0.0286 (8) | 0.0225 (8) | −0.0007 (6) | −0.0017 (6) | −0.0027 (6) |
C22 | 0.0321 (10) | 0.0424 (10) | 0.0337 (10) | 0.0062 (8) | −0.0031 (8) | −0.0126 (8) |
Cl1—C11 | 1.7408 (17) | C15—C21 | 1.512 (3) |
Cl2—C16 | 1.7322 (18) | C17—C19 | 1.383 (4) |
O3—C6 | 1.3581 (19) | C17—C20 | 1.395 (3) |
O3—C18 | 1.451 (2) | C19—C22 | 1.379 (3) |
O4—C8 | 1.251 (2) | C20—C21 | 1.385 (3) |
N5—C14 | 1.328 (3) | N5—H5 | 0.880 |
N5—C15 | 1.456 (3) | C9—H9 | 0.950 |
C6—C7 | 1.404 (3) | C10—H10 | 0.950 |
C6—C16 | 1.398 (3) | C13—H13 | 0.950 |
C7—C8 | 1.492 (2) | C14—H14 | 0.950 |
C7—C10 | 1.395 (2) | C15—H15A | 0.990 |
C8—C12 | 1.432 (3) | C15—H15B | 0.990 |
C9—C11 | 1.390 (3) | C17—H17 | 0.950 |
C9—C16 | 1.379 (3) | C18—H18A | 0.990 |
C10—C11 | 1.378 (2) | C18—H18B | 0.990 |
C12—C14 | 1.376 (3) | C19—H19 | 0.950 |
C12—C18 | 1.494 (3) | C20—H20 | 0.950 |
C13—C21 | 1.392 (3) | C22—H22 | 0.950 |
C13—C22 | 1.380 (3) | ||
Cl2···O3 | 2.9012 (14) | C6···H19v | 2.7245 |
O3···C8 | 2.874 (2) | C7···H19v | 3.2656 |
O4···N5 | 2.7737 (19) | C8···H14vi | 3.0884 |
O4···C10 | 2.851 (2) | C8···H17v | 3.5062 |
O4···C14 | 2.884 (2) | C8···H18Avii | 3.5501 |
N5···C8 | 2.943 (3) | C9···H22vi | 3.2255 |
N5···C20 | 2.894 (3) | C10···H13vi | 3.5411 |
C6···C11 | 2.771 (3) | C10···H15Avi | 3.3524 |
C6···C12 | 2.797 (3) | C10···H15Bii | 3.2487 |
C7···C9 | 2.796 (3) | C11···H13vi | 3.2488 |
C7···C18 | 2.761 (3) | C12···H17v | 3.1140 |
C10···C16 | 2.777 (3) | C12···H20iii | 3.3837 |
C13···C17 | 2.760 (3) | C13···H10ii | 2.9701 |
C14···C20 | 3.504 (3) | C14···H17v | 3.5246 |
C14···C21 | 3.307 (3) | C14···H17iii | 3.1469 |
C16···C18 | 3.596 (3) | C14···H20iii | 3.1337 |
C19···C21 | 2.781 (3) | C15···H10ii | 3.1335 |
C20···C22 | 2.772 (3) | C15···H17iii | 3.4792 |
Cl1···C9i | 3.4408 (19) | C15···H18Avi | 3.5736 |
Cl1···C13ii | 3.5107 (19) | C16···H19v | 2.9361 |
Cl1···C22ii | 3.592 (3) | C16···H22vi | 3.3726 |
Cl2···C11iii | 3.566 (2) | C17···H14vii | 3.2418 |
O3···N5iv | 3.592 (3) | C17···H15Avii | 2.8789 |
O3···C15iv | 3.425 (3) | C17···H18Biv | 2.6983 |
O3···C19v | 3.544 (3) | C18···H5iv | 3.2627 |
O4···O4ii | 3.4773 (18) | C18···H15Biv | 3.4691 |
O4···N5ii | 3.108 (2) | C18···H17vi | 3.5334 |
O4···C14vi | 3.569 (3) | C18···H17v | 3.3747 |
O4···C15ii | 3.329 (3) | C18···H20iii | 3.0867 |
O4···C18vii | 3.481 (3) | C19···H15Avii | 3.0330 |
N5···O3vi | 3.592 (3) | C19···H18Biv | 3.3900 |
N5···O4ii | 3.108 (2) | C20···H10ii | 3.3922 |
N5···C17iii | 3.599 (3) | C20···H14vii | 2.9477 |
C6···C19v | 3.579 (3) | C20···H15Avii | 3.3691 |
C9···Cl1viii | 3.4408 (19) | C20···H18Biv | 3.0242 |
C9···C22vi | 3.433 (3) | C20···H18Bvii | 3.5530 |
C10···C13vi | 3.569 (3) | C21···H10ii | 2.8430 |
C11···Cl2vii | 3.566 (2) | C22···H10ii | 3.5942 |
C11···C13vi | 3.475 (3) | H5···O3vi | 3.4434 |
C13···Cl1ii | 3.5107 (19) | H5···O4ii | 2.4314 |
C13···C10iv | 3.569 (3) | H5···C18vi | 3.2627 |
C13···C11iv | 3.475 (3) | H5···H5ii | 2.9979 |
C14···O4iv | 3.569 (3) | H5···H18Avi | 2.4038 |
C14···C17iii | 3.430 (3) | H5···H18Avii | 2.8905 |
C14···C20iii | 3.421 (3) | H5···H18Bvii | 3.5998 |
C15···O3vi | 3.425 (3) | H9···Cl1viii | 3.1181 |
C15···O4ii | 3.329 (3) | H9···Cl2i | 3.4352 |
C15···C17iii | 3.574 (3) | H9···H13x | 3.1291 |
C16···C22vi | 3.398 (3) | H9···H22vi | 3.2522 |
C17···N5vii | 3.599 (3) | H9···H22ix | 3.4450 |
C17···C14vii | 3.430 (3) | H10···C13ii | 2.9701 |
C17···C15vii | 3.574 (3) | H10···C15ii | 3.1335 |
C18···O4iii | 3.481 (3) | H10···C20ii | 3.3922 |
C19···O3v | 3.544 (3) | H10···C21ii | 2.8430 |
C19···C6v | 3.579 (3) | H10···C22ii | 3.5942 |
C20···C14vii | 3.421 (3) | H10···H13ii | 3.1695 |
C22···Cl1ii | 3.592 (3) | H10···H14vi | 3.2613 |
C22···C9iv | 3.433 (3) | H10···H15Avi | 3.0153 |
C22···C16iv | 3.398 (3) | H10···H15Bii | 2.5476 |
Cl1···H9 | 2.7981 | H13···Cl1iv | 3.5668 |
Cl1···H10 | 2.8069 | H13···Cl1ii | 3.2600 |
Cl2···H9 | 2.8075 | H13···C10iv | 3.5411 |
O4···H5 | 2.1512 | H13···C11iv | 3.2488 |
O4···H10 | 2.5850 | H13···H9xi | 3.1291 |
N5···H20 | 2.5602 | H13···H10ii | 3.1695 |
C6···H9 | 3.2783 | H14···O4iv | 2.6862 |
C6···H10 | 3.2801 | H14···C8iv | 3.0884 |
C6···H18A | 3.1745 | H14···C17iii | 3.2418 |
C6···H18B | 2.6342 | H14···C20iii | 2.9477 |
C7···H18B | 2.9925 | H14···H10iv | 3.2613 |
C8···H5 | 2.6624 | H14···H17iii | 3.2271 |
C8···H10 | 2.6746 | H14···H20iii | 2.7166 |
C8···H14 | 3.2926 | H15A···O3vi | 3.5892 |
C8···H18A | 3.3067 | H15A···C10iv | 3.3524 |
C8···H18B | 2.8563 | H15A···C17iii | 2.8789 |
C9···H10 | 3.2716 | H15A···C19iii | 3.0330 |
C10···H9 | 3.2726 | H15A···C20iii | 3.3691 |
C12···H5 | 2.5989 | H15A···H10iv | 3.0153 |
C13···H15A | 2.6653 | H15A···H17iii | 3.0194 |
C13···H15B | 2.7295 | H15A···H19iii | 3.2603 |
C13···H19 | 3.2485 | H15B···Cl2vi | 3.3943 |
C13···H20 | 3.2564 | H15B···O3vi | 2.6846 |
C14···H15A | 2.5490 | H15B···O4ii | 2.8852 |
C14···H15B | 3.1763 | H15B···C10ii | 3.2487 |
C14···H18A | 2.5431 | H15B···C18vi | 3.4691 |
C14···H18B | 2.9566 | H15B···H10ii | 2.5476 |
C14···H20 | 3.0445 | H15B···H17iii | 3.5708 |
C15···H13 | 2.6087 | H15B···H18Avi | 3.1415 |
C15···H14 | 2.5581 | H17···O3v | 3.0772 |
C15···H20 | 2.7292 | H17···N5vii | 3.2276 |
C17···H22 | 3.2478 | H17···C6v | 3.5927 |
C18···H14 | 2.5802 | H17···C8v | 3.5062 |
C19···H13 | 3.2458 | H17···C12v | 3.1140 |
C19···H20 | 3.2642 | H17···C14v | 3.5246 |
C20···H5 | 3.1890 | H17···C14vii | 3.1469 |
C20···H13 | 3.2529 | H17···C15vii | 3.4792 |
C20···H14 | 3.5740 | H17···C18iv | 3.5334 |
C20···H15A | 3.2015 | H17···C18v | 3.3747 |
C20···H15B | 3.1408 | H17···H14vii | 3.2271 |
C20···H19 | 3.2661 | H17···H15Avii | 3.0194 |
C21···H5 | 2.9716 | H17···H15Bvii | 3.5708 |
C21···H14 | 3.2721 | H17···H18Av | 3.3813 |
C21···H17 | 3.2625 | H17···H18Biv | 2.5793 |
C21···H22 | 3.2644 | H17···H20v | 3.4719 |
C22···H17 | 3.2473 | H18A···O4iv | 2.7604 |
H5···H14 | 2.7144 | H18A···O4iii | 2.8400 |
H5···H15A | 2.7426 | H18A···N5iv | 2.9479 |
H5···H15B | 2.2499 | H18A···N5iii | 3.5007 |
H5···H20 | 2.7282 | H18A···C8iii | 3.5501 |
H13···H15A | 2.5495 | H18A···C15iv | 3.5736 |
H13···H15B | 2.6719 | H18A···H5iv | 2.4038 |
H13···H22 | 2.3245 | H18A···H5iii | 2.8905 |
H14···H15A | 2.3613 | H18A···H15Biv | 3.1415 |
H14···H15B | 3.4285 | H18A···H17v | 3.3813 |
H14···H18A | 2.2803 | H18A···H20iii | 2.8599 |
H14···H18B | 3.0427 | H18B···O4iii | 3.4985 |
H14···H20 | 3.2864 | H18B···C17vi | 2.6983 |
H15A···H20 | 3.4440 | H18B···C19vi | 3.3900 |
H15B···H20 | 3.3569 | H18B···C20vi | 3.0242 |
H17···H19 | 2.3321 | H18B···C20iii | 3.5530 |
H17···H20 | 2.3436 | H18B···H5iii | 3.5998 |
H19···H22 | 2.3289 | H18B···H17vi | 2.5793 |
Cl1···H9i | 3.1181 | H18B···H20vi | 3.1266 |
Cl1···H13vi | 3.5668 | H18B···H20iii | 2.6531 |
Cl1···H13ii | 3.2600 | H19···Cl1xii | 3.5454 |
Cl1···H19ix | 3.5454 | H19···Cl2v | 3.5181 |
Cl1···H22ii | 3.4083 | H19···O3v | 2.8986 |
Cl1···H22ix | 2.8136 | H19···C6v | 2.7245 |
Cl2···H9viii | 3.4352 | H19···C7v | 3.2656 |
Cl2···H15Biv | 3.3943 | H19···C16v | 2.9361 |
Cl2···H19v | 3.5181 | H19···H15Avii | 3.2603 |
Cl2···H22x | 3.3865 | H20···O4ii | 3.5806 |
O3···H5iv | 3.4434 | H20···C12vii | 3.3837 |
O3···H15Aiv | 3.5892 | H20···C14vii | 3.1337 |
O3···H15Biv | 2.6846 | H20···C18vii | 3.0867 |
O3···H17v | 3.0772 | H20···H14vii | 2.7166 |
O3···H19v | 2.8986 | H20···H17v | 3.4719 |
O4···H5ii | 2.4314 | H20···H18Avii | 2.8599 |
O4···H14vi | 2.6862 | H20···H18Biv | 3.1266 |
O4···H15Bii | 2.8852 | H20···H18Bvii | 2.6531 |
O4···H18Avi | 2.7604 | H20···H20v | 3.5598 |
O4···H18Avii | 2.8400 | H22···Cl1ii | 3.4083 |
O4···H18Bvii | 3.4985 | H22···Cl1xii | 2.8136 |
O4···H20ii | 3.5806 | H22···Cl2xi | 3.3865 |
N5···H17iii | 3.2276 | H22···C9iv | 3.2255 |
N5···H18Avi | 2.9479 | H22···C16iv | 3.3726 |
N5···H18Avii | 3.5007 | H22···H9iv | 3.2522 |
C6···H17v | 3.5927 | H22···H9xii | 3.4450 |
C6—O3—C18 | 112.97 (12) | C15—C21—C20 | 123.44 (16) |
C14—N5—C15 | 122.12 (14) | C13—C22—C19 | 120.12 (19) |
O3—C6—C7 | 122.55 (13) | C14—N5—H5 | 118.942 |
O3—C6—C16 | 118.21 (14) | C15—N5—H5 | 118.939 |
C7—C6—C16 | 119.16 (14) | C11—C9—H9 | 120.638 |
C6—C7—C8 | 119.51 (13) | C16—C9—H9 | 120.643 |
C6—C7—C10 | 119.71 (14) | C7—C10—H10 | 120.227 |
C8—C7—C10 | 120.61 (14) | C11—C10—H10 | 120.204 |
O4—C8—C7 | 120.75 (14) | C21—C13—H13 | 119.676 |
O4—C8—C12 | 124.53 (14) | C22—C13—H13 | 119.686 |
C7—C8—C12 | 114.69 (14) | N5—C14—H14 | 116.629 |
C11—C9—C16 | 118.72 (16) | C12—C14—H14 | 116.629 |
C7—C10—C11 | 119.57 (14) | N5—C15—H15A | 108.564 |
Cl1—C11—C9 | 118.55 (12) | N5—C15—H15B | 108.559 |
Cl1—C11—C10 | 119.79 (13) | C21—C15—H15A | 108.561 |
C9—C11—C10 | 121.67 (15) | C21—C15—H15B | 108.557 |
C8—C12—C14 | 122.53 (15) | H15A—C15—H15B | 107.537 |
C8—C12—C18 | 117.64 (15) | C19—C17—H17 | 119.888 |
C14—C12—C18 | 119.47 (15) | C20—C17—H17 | 119.880 |
C21—C13—C22 | 120.64 (16) | O3—C18—H18A | 109.152 |
N5—C14—C12 | 126.74 (16) | O3—C18—H18B | 109.161 |
N5—C15—C21 | 114.83 (14) | C12—C18—H18A | 109.151 |
Cl2—C16—C6 | 119.12 (13) | C12—C18—H18B | 109.152 |
Cl2—C16—C9 | 119.72 (13) | H18A—C18—H18B | 107.860 |
C6—C16—C9 | 121.15 (15) | C17—C19—H19 | 120.063 |
C19—C17—C20 | 120.23 (18) | C22—C19—H19 | 120.065 |
O3—C18—C12 | 112.27 (13) | C17—C20—H20 | 120.039 |
C17—C19—C22 | 119.87 (18) | C21—C20—H20 | 120.047 |
C17—C20—C21 | 119.91 (17) | C13—C22—H22 | 119.943 |
C13—C21—C15 | 117.33 (15) | C19—C22—H22 | 119.938 |
C13—C21—C20 | 119.22 (15) | ||
C6—O3—C18—C12 | −51.66 (17) | C7—C10—C11—C9 | −0.2 (3) |
C6—O3—C18—H18A | −172.8 | H10—C10—C11—Cl1 | −0.5 |
C6—O3—C18—H18B | 69.5 | H10—C10—C11—C9 | 179.8 |
C18—O3—C6—C7 | 29.69 (19) | C8—C12—C14—N5 | 0.6 (3) |
C18—O3—C6—C16 | −153.42 (12) | C8—C12—C14—H14 | −179.4 |
C14—N5—C15—C21 | 89.40 (18) | C8—C12—C18—O3 | 43.1 (2) |
C14—N5—C15—H15A | −32.3 | C8—C12—C18—H18A | 164.3 |
C14—N5—C15—H15B | −148.9 | C8—C12—C18—H18B | −78.0 |
C15—N5—C14—C12 | 175.36 (14) | C14—C12—C18—O3 | −143.61 (15) |
C15—N5—C14—H14 | −4.6 | C14—C12—C18—H18A | −22.5 |
H5—N5—C14—C12 | −4.6 | C14—C12—C18—H18B | 95.2 |
H5—N5—C14—H14 | 175.4 | C18—C12—C14—N5 | −172.27 (14) |
H5—N5—C15—C21 | −90.6 | C18—C12—C14—H14 | 7.7 |
H5—N5—C15—H15A | 147.7 | C21—C13—C22—C19 | −0.0 (3) |
H5—N5—C15—H15B | 31.1 | C21—C13—C22—H22 | 180.0 |
O3—C6—C7—C8 | 3.3 (3) | C22—C13—C21—C15 | −178.49 (14) |
O3—C6—C7—C10 | 178.56 (12) | C22—C13—C21—C20 | 0.6 (3) |
O3—C6—C16—Cl2 | 2.8 (2) | H13—C13—C21—C15 | 1.5 |
O3—C6—C16—C9 | −178.65 (12) | H13—C13—C21—C20 | −179.4 |
C7—C6—C16—Cl2 | 179.76 (12) | H13—C13—C22—C19 | 180.0 |
C7—C6—C16—C9 | −1.6 (3) | H13—C13—C22—H22 | −0.0 |
C16—C6—C7—C8 | −173.54 (13) | N5—C15—C21—C13 | −174.97 (12) |
C16—C6—C7—C10 | 1.7 (3) | N5—C15—C21—C20 | 6.0 (2) |
C6—C7—C8—O4 | 165.29 (13) | H15A—C15—C21—C13 | −53.3 |
C6—C7—C8—C12 | −12.7 (2) | H15A—C15—C21—C20 | 127.7 |
C6—C7—C10—C11 | −0.8 (3) | H15B—C15—C21—C13 | 63.3 |
C6—C7—C10—H10 | 179.2 | H15B—C15—C21—C20 | −115.7 |
C8—C7—C10—C11 | 174.38 (12) | C19—C17—C20—C21 | 0.2 (3) |
C8—C7—C10—H10 | −5.6 | C19—C17—C20—H20 | −179.8 |
C10—C7—C8—O4 | −9.9 (3) | C20—C17—C19—C22 | 0.4 (3) |
C10—C7—C8—C12 | 172.11 (13) | C20—C17—C19—H19 | −179.6 |
O4—C8—C12—C14 | −2.0 (3) | H17—C17—C19—C22 | −179.6 |
O4—C8—C12—C18 | 171.05 (13) | H17—C17—C19—H19 | 0.3 |
C7—C8—C12—C14 | 175.92 (13) | H17—C17—C20—C21 | −179.8 |
C7—C8—C12—C18 | −11.05 (19) | H17—C17—C20—H20 | 0.2 |
C11—C9—C16—Cl2 | 179.25 (12) | C17—C19—C22—C13 | −0.5 (3) |
C11—C9—C16—C6 | 0.7 (3) | C17—C19—C22—H22 | 179.5 |
C16—C9—C11—Cl1 | −179.46 (13) | H19—C19—C22—C13 | 179.5 |
C16—C9—C11—C10 | 0.3 (3) | H19—C19—C22—H22 | −0.5 |
H9—C9—C11—Cl1 | 0.5 | C17—C20—C21—C13 | −0.7 (3) |
H9—C9—C11—C10 | −179.7 | C17—C20—C21—C15 | 178.32 (14) |
H9—C9—C16—Cl2 | −0.8 | H20—C20—C21—C13 | 179.3 |
H9—C9—C16—C6 | −179.3 | H20—C20—C21—C15 | −1.7 |
C7—C10—C11—Cl1 | 179.54 (12) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, −y+1, −z+1; (iii) x−1/2, y, −z+1/2; (iv) −x+1/2, −y+1, z−1/2; (v) −x+1, −y+1, −z; (vi) −x+1/2, −y+1, z+1/2; (vii) x+1/2, y, −z+1/2; (viii) x, −y+3/2, z−1/2; (ix) −x+1, y+1/2, −z+1/2; (x) −x+1/2, y+1/2, z; (xi) −x+1/2, y−1/2, z; (xii) −x+1, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C17H13Cl2NO2 |
Mr | 334.20 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 11.312 (5), 28.284 (8), 9.294 (4) |
V (Å3) | 2973.7 (19) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.44 |
Crystal size (mm) | 0.40 × 0.40 × 0.30 |
Data collection | |
Diffractometer | Rigaku AFC7R diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.734, 0.876 |
No. of measured, independent and observed [F2 > 2.0σ(F2)] reflections | 4921, 3411, 2842 |
Rint | 0.027 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.095, 1.01 |
No. of reflections | 3411 |
No. of parameters | 199 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.37, −0.30 |
Computer programs: WinAFC (Rigaku, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalStructure (Rigaku, 2010).
Acknowledgements
We acknowledge the University of Shizuoka for supporting this study.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases of 3-formyl chromones have attracted much attention due to their biological functions such as enzyme inhibition (Khan et al. 2009; Tu et al. 2013). Here we report the crystal structure of the title compound, which was obtained from the condensation reaction of 6,8-dichloro-3-formylchromone with benzylamine and successive reduction by use of 2-picoline borane. The structure shows that the H atom of the –OH group is transferred to the N5 atom of the imine, thus forming a zwitterion. As a result, an intramolecular O···H–N [O···N = 2.7737 (19) Å], rather than O–H···N, hydrogen bond is formed. The bond distances O4–C8 [1.251 (2) Å], C8–C12 [1.432 (3) Å], C12–C14 [1.376 (3) Å] and C14–N5 [1.328 (3) Å] and torsion angles O4–C8–C12–C14 [–2.0 (3)°] and C8–C12–C14–N5 [0.6 (3)°] in the six-membered ring indicate charge delocalization among the atoms. This effect might be responsible for the preferential reduction of the α,β-unsaturated carbonyl of the synthetic intermediate, rather than reduction of the imine.