organic compounds
(E)-6,8-Dichloro-3-{[(naphthalen-1-ylmethyl)iminiumyl]methyl}-2H-chromen-4-olate
aSchool of Pharmaceutical Sciences, University of Shizuoka, 52-1 Yada, Suruga-ku, Shizuoka 422-8526, Japan
*Correspondence e-mail: ishi206@u-shizuoka-ken.ac.jp
In the title compound, C21H15Cl2NO2, the H atom of the –OH group is transferred to the N atom of the imine, forming a zwitterion. Thus, there is formation of a six-membered ring via an intramolecular O⋯H—N, rather than O—H⋯N, hydrogen bond in the molecule. The dihedral angle between the naphthalene ring system and the benzene ring of the 2H-chromen system is 87.41 (4)°. In the crystal, the molecules are packed through N—H⋯O, π–π [centroid–centroid distances = 3.744 (3) and 3.780 (3) Å], C—Cl⋯π [Cl⋯centroid = 3.261 (3) Å], C—H⋯π and C—H⋯O interactions.
Related literature
For the biological propertries of similar structures, see: Khan et al. (2009); Tu et al. (2013). For related structures, see: Benaouida et al. (2013); Małecka & Budzisz (2006).
Experimental
Crystal data
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Data collection: WinAFC (Rigaku, 1999); cell WinAFC; data reduction: WinAFC; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure.
Supporting information
10.1107/S1600536813018084/zp2006sup1.cif
contains datablocks General, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813018084/zp2006Isup2.hkl
1-Naphthylmethylamine (5.0 mmol), 6,8-dichloro-3-formylchromone (5.0 mmol) and 2-picoline borane (5.0 mmol) were dissolved in a mixture of MeOH-AcOH (10:1, 60 ml), and stirred overnight at room temperature. Hydrochloric acid (1 M, 20 ml) was added to the reaction mixture, which was then stirred for 30 min. After neutralization with saturated NaHCO3, the mixture was extracted with methylene chloride. The extract was washed with brine, dried over anhydrous Na2SO4 and purified by
on silica gel (n-hexane: ethyl acetate = 9: 1). The eluted fractions were concentrated and filtered off. Layering n-hexane on the filtrate gave single crystals suitable for X-ray diffraction (yield 19%).The carbon-bound hydrogen atoms were placed in geometrical positions [C–H 0.95 to 0.99 Å, Uiso(H) = 1.2Ueq(C)], and refined using a riding model. The hydrogen atom of the OH group was located near N1 of the imine in a difference Fourier map, and refined with distance constraint [N–H 0.88 Å, Uiso(H) = 1.2Ueq(N)].
Data collection: WinAFC (Rigaku, 1999); cell
WinAFC (Rigaku, 1999); data reduction: WinAFC (Rigaku, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku, 2010); software used to prepare material for publication: CrystalStructure (Rigaku, 2010).Fig. 1. The molecular structure of the title compound, with displacement ellipsoids drawn at the 50% probability level. Hydrogen atoms are shown as small spheres of arbitrary radius. | |
Fig. 2. A crystal packing view of the title compound. Intra- and intermolecular N–H···O hydrogen bonds are represented as dashed lines. |
C21H15Cl2NO2 | F(000) = 792.00 |
Mr = 384.26 | Dx = 1.501 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 16.286 (7) Å | θ = 15.7–17.5° |
b = 8.910 (6) Å | µ = 0.40 mm−1 |
c = 12.008 (9) Å | T = 100 K |
β = 102.65 (4)° | Block, yellow |
V = 1700.2 (19) Å3 | 0.37 × 0.37 × 0.28 mm |
Z = 4 |
Rigaku AFC7R diffractometer | θmax = 27.6° |
ω–2θ scans | h = −20→21 |
4657 measured reflections | k = 0→11 |
3875 independent reflections | l = −15→8 |
3367 reflections with F2 > 2.0σ(F2) | 3 standard reflections every 150 reflections |
Rint = 0.083 | intensity decay: −0.4% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.083 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0433P)2 + 0.7479P] where P = (Fo2 + 2Fc2)/3 |
3875 reflections | (Δ/σ)max = 0.001 |
235 parameters | Δρmax = 0.49 e Å−3 |
0 restraints | Δρmin = −0.53 e Å−3 |
Primary atom site location: structure-invariant direct methods |
C21H15Cl2NO2 | V = 1700.2 (19) Å3 |
Mr = 384.26 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 16.286 (7) Å | µ = 0.40 mm−1 |
b = 8.910 (6) Å | T = 100 K |
c = 12.008 (9) Å | 0.37 × 0.37 × 0.28 mm |
β = 102.65 (4)° |
Rigaku AFC7R diffractometer | Rint = 0.083 |
4657 measured reflections | 3 standard reflections every 150 reflections |
3875 independent reflections | intensity decay: −0.4% |
3367 reflections with F2 > 2.0σ(F2) |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.083 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.49 e Å−3 |
3875 reflections | Δρmin = −0.53 e Å−3 |
235 parameters |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.10099 (2) | 0.41074 (4) | 0.50407 (3) | 0.02134 (10) | |
Cl2 | 0.17147 (2) | 0.84582 (4) | 0.82092 (3) | 0.01871 (10) | |
O1 | 0.34501 (6) | 0.79385 (11) | 0.80754 (9) | 0.0176 (2) | |
O2 | 0.43015 (6) | 0.52671 (12) | 0.57813 (9) | 0.0194 (2) | |
N1 | 0.58885 (7) | 0.64807 (13) | 0.66903 (11) | 0.0178 (3) | |
C1 | 0.42933 (8) | 0.73258 (16) | 0.84317 (12) | 0.0173 (3) | |
C2 | 0.46328 (8) | 0.67928 (15) | 0.74377 (12) | 0.0163 (3) | |
C3 | 0.40821 (8) | 0.59345 (15) | 0.65803 (12) | 0.0153 (3) | |
C4 | 0.25901 (8) | 0.50521 (16) | 0.59487 (11) | 0.0149 (3) | |
C5 | 0.17435 (8) | 0.52122 (16) | 0.59411 (11) | 0.0156 (3) | |
C6 | 0.14631 (8) | 0.62656 (15) | 0.66285 (11) | 0.0152 (3) | |
C7 | 0.20515 (8) | 0.71380 (15) | 0.73498 (11) | 0.0141 (3) | |
C8 | 0.29135 (8) | 0.69931 (15) | 0.73910 (11) | 0.0142 (3) | |
C9 | 0.31801 (8) | 0.59510 (15) | 0.66686 (11) | 0.0148 (3) | |
C10 | 0.54680 (8) | 0.70260 (15) | 0.74329 (12) | 0.0166 (3) | |
C11 | 0.67892 (8) | 0.67249 (16) | 0.68340 (12) | 0.0174 (3) | |
C12 | 0.70249 (8) | 0.80052 (15) | 0.61334 (11) | 0.0140 (3) | |
C13 | 0.64295 (9) | 0.87459 (16) | 0.53406 (12) | 0.0176 (3) | |
C14 | 0.66574 (9) | 0.99175 (17) | 0.46685 (12) | 0.0208 (3) | |
C15 | 0.74839 (10) | 1.03185 (17) | 0.47995 (12) | 0.0210 (3) | |
C16 | 0.89800 (9) | 0.99932 (17) | 0.57563 (13) | 0.0212 (3) | |
C17 | 0.95874 (9) | 0.93028 (17) | 0.65587 (13) | 0.0219 (3) | |
C18 | 0.93670 (9) | 0.81701 (16) | 0.72581 (12) | 0.0193 (3) | |
C19 | 0.85400 (8) | 0.77372 (15) | 0.71310 (12) | 0.0157 (3) | |
C20 | 0.78937 (8) | 0.84224 (14) | 0.63022 (11) | 0.0133 (3) | |
C21 | 0.81193 (9) | 0.95853 (16) | 0.56097 (12) | 0.0170 (3) | |
H1B | 0.4283 | 0.6476 | 0.8960 | 0.0207* | |
H2A | 0.4672 | 0.8106 | 0.8850 | 0.0207* | |
H3 | 0.2769 | 0.4334 | 0.5466 | 0.0179* | |
H4 | 0.0879 | 0.6382 | 0.6603 | 0.0182* | |
H5 | 0.5777 | 0.7643 | 0.8024 | 0.0199* | |
H6 | 0.5617 | 0.5962 | 0.6100 | 0.0213* | |
H7A | 0.7048 | 0.5791 | 0.6626 | 0.0209* | |
H8B | 0.7033 | 0.6925 | 0.7651 | 0.0209* | |
H9 | 0.5855 | 0.8470 | 0.5240 | 0.0211* | |
H10 | 0.6236 | 1.0424 | 0.4127 | 0.0249* | |
H11 | 0.7633 | 1.1098 | 0.4341 | 0.0252* | |
H12 | 0.9135 | 1.0757 | 0.5290 | 0.0255* | |
H13 | 1.0160 | 0.9588 | 0.6645 | 0.0263* | |
H14 | 0.9791 | 0.7702 | 0.7820 | 0.0231* | |
H15 | 0.8400 | 0.6968 | 0.7605 | 0.0188* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01563 (16) | 0.0285 (2) | 0.01929 (17) | −0.00243 (13) | 0.00266 (12) | −0.00941 (13) |
Cl2 | 0.01504 (16) | 0.01710 (17) | 0.02549 (18) | −0.00033 (12) | 0.00772 (12) | −0.00669 (13) |
O1 | 0.0124 (5) | 0.0160 (5) | 0.0241 (5) | 0.0000 (4) | 0.0036 (4) | −0.0044 (4) |
O2 | 0.0161 (5) | 0.0212 (5) | 0.0225 (5) | 0.0025 (4) | 0.0078 (4) | −0.0020 (4) |
N1 | 0.0120 (6) | 0.0189 (6) | 0.0228 (6) | −0.0021 (5) | 0.0046 (5) | −0.0003 (5) |
C1 | 0.0116 (6) | 0.0192 (7) | 0.0204 (7) | 0.0005 (5) | 0.0020 (5) | −0.0002 (6) |
C2 | 0.0139 (6) | 0.0148 (7) | 0.0210 (7) | 0.0018 (5) | 0.0053 (5) | 0.0031 (6) |
C3 | 0.0138 (6) | 0.0135 (6) | 0.0197 (7) | 0.0027 (5) | 0.0061 (5) | 0.0043 (5) |
C4 | 0.0160 (6) | 0.0162 (6) | 0.0134 (6) | 0.0024 (5) | 0.0048 (5) | 0.0004 (5) |
C5 | 0.0155 (7) | 0.0170 (7) | 0.0141 (6) | −0.0015 (5) | 0.0024 (5) | 0.0006 (5) |
C6 | 0.0125 (6) | 0.0174 (7) | 0.0165 (6) | 0.0008 (5) | 0.0051 (5) | 0.0021 (5) |
C7 | 0.0155 (6) | 0.0118 (6) | 0.0164 (6) | 0.0024 (5) | 0.0068 (5) | 0.0007 (5) |
C8 | 0.0137 (6) | 0.0128 (6) | 0.0162 (6) | −0.0001 (5) | 0.0039 (5) | 0.0022 (5) |
C9 | 0.0138 (6) | 0.0150 (7) | 0.0165 (6) | 0.0018 (5) | 0.0053 (5) | 0.0033 (5) |
C10 | 0.0146 (6) | 0.0142 (6) | 0.0206 (7) | 0.0000 (5) | 0.0032 (5) | 0.0037 (6) |
C11 | 0.0110 (6) | 0.0173 (7) | 0.0245 (7) | 0.0012 (5) | 0.0050 (5) | 0.0044 (6) |
C12 | 0.0140 (6) | 0.0132 (6) | 0.0155 (6) | 0.0001 (5) | 0.0051 (5) | −0.0018 (5) |
C13 | 0.0162 (7) | 0.0183 (7) | 0.0177 (7) | 0.0011 (5) | 0.0021 (5) | −0.0014 (6) |
C14 | 0.0244 (7) | 0.0205 (7) | 0.0157 (7) | 0.0033 (6) | 0.0003 (6) | 0.0017 (6) |
C15 | 0.0282 (8) | 0.0187 (7) | 0.0172 (7) | −0.0015 (6) | 0.0072 (6) | 0.0027 (6) |
C16 | 0.0231 (8) | 0.0187 (7) | 0.0246 (7) | −0.0042 (6) | 0.0110 (6) | 0.0001 (6) |
C17 | 0.0153 (7) | 0.0224 (8) | 0.0298 (8) | −0.0038 (6) | 0.0089 (6) | −0.0056 (6) |
C18 | 0.0150 (7) | 0.0206 (7) | 0.0219 (7) | 0.0030 (6) | 0.0035 (6) | −0.0033 (6) |
C19 | 0.0161 (6) | 0.0143 (6) | 0.0173 (7) | 0.0004 (5) | 0.0050 (5) | −0.0017 (5) |
C20 | 0.0144 (6) | 0.0127 (6) | 0.0137 (6) | −0.0000 (5) | 0.0050 (5) | −0.0029 (5) |
C21 | 0.0199 (7) | 0.0157 (7) | 0.0169 (7) | −0.0008 (6) | 0.0072 (5) | −0.0021 (6) |
Cl1—C5 | 1.7319 (15) | C15—C21 | 1.415 (2) |
Cl2—C7 | 1.7313 (17) | C16—C17 | 1.367 (2) |
O1—C1 | 1.4524 (17) | C16—C21 | 1.421 (3) |
O1—C8 | 1.3543 (17) | C17—C18 | 1.409 (3) |
O2—C3 | 1.246 (2) | C18—C19 | 1.377 (2) |
N1—C10 | 1.330 (3) | C19—C20 | 1.4185 (19) |
N1—C11 | 1.4554 (19) | C20—C21 | 1.426 (3) |
C1—C2 | 1.498 (3) | N1—H6 | 0.880 |
C2—C3 | 1.430 (2) | C1—H1B | 0.990 |
C2—C10 | 1.377 (2) | C1—H2A | 0.990 |
C3—C9 | 1.496 (2) | C4—H3 | 0.950 |
C4—C5 | 1.384 (2) | C6—H4 | 0.950 |
C4—C9 | 1.3958 (19) | C10—H5 | 0.950 |
C5—C6 | 1.391 (2) | C11—H7A | 0.990 |
C6—C7 | 1.3817 (19) | C11—H8B | 0.990 |
C7—C8 | 1.400 (2) | C13—H9 | 0.950 |
C8—C9 | 1.403 (2) | C14—H10 | 0.950 |
C11—C12 | 1.516 (3) | C15—H11 | 0.950 |
C12—C13 | 1.3703 (19) | C16—H12 | 0.950 |
C12—C20 | 1.434 (2) | C17—H13 | 0.950 |
C13—C14 | 1.418 (3) | C18—H14 | 0.950 |
C14—C15 | 1.368 (3) | C19—H15 | 0.950 |
Cl2···O1 | 2.9030 (16) | C2···H9iv | 3.5215 |
O1···C3 | 2.878 (3) | C2···H10vi | 3.2427 |
O2···N1 | 2.7938 (19) | C2···H10iv | 3.5375 |
O2···C4 | 2.844 (2) | C3···H2Aii | 3.3458 |
O2···C10 | 2.889 (2) | C3···H5ii | 2.9718 |
N1···C3 | 2.956 (2) | C3···H10vi | 3.3648 |
N1···C13 | 2.846 (3) | C4···H5ii | 3.4301 |
C1···C9 | 2.755 (3) | C4···H7Aiii | 3.3561 |
C2···C8 | 2.794 (3) | C4···H8Bii | 3.2427 |
C4···C7 | 2.775 (3) | C4···H11vi | 3.4591 |
C5···C8 | 2.780 (3) | C5···H11vi | 3.4793 |
C6···C9 | 2.800 (3) | C5···H15ii | 3.4109 |
C10···C12 | 3.370 (3) | C6···H11vi | 3.1293 |
C10···C13 | 3.583 (3) | C6···H12vi | 3.5089 |
C11···C19 | 2.937 (3) | C6···H14viii | 3.5789 |
C12···C15 | 2.810 (3) | C7···H11vi | 2.7047 |
C13···C21 | 2.801 (3) | C8···H7Av | 3.5798 |
C14···C20 | 2.819 (3) | C8···H10vi | 3.4120 |
C16···C19 | 2.792 (3) | C8···H11vi | 2.6837 |
C17···C20 | 2.819 (3) | C9···H5ii | 3.3815 |
C18···C21 | 2.806 (3) | C9···H10vi | 3.5560 |
Cl1···Cl2i | 3.4590 (17) | C9···H11vi | 3.0717 |
Cl1···C18ii | 3.531 (3) | C10···H9iv | 3.3197 |
Cl1···C18iii | 3.372 (3) | C10···H10iv | 3.0585 |
Cl1···C19ii | 3.531 (3) | C11···H3iii | 3.1482 |
Cl1···C19iii | 3.298 (3) | C12···H3iii | 2.9038 |
Cl1···C20iii | 3.483 (2) | C13···H1Bv | 2.8981 |
Cl2···Cl1iv | 3.4590 (17) | C13···H1Bi | 3.5306 |
Cl2···C4iv | 3.544 (3) | C13···H2Ai | 3.4463 |
Cl2···C5iv | 3.478 (3) | C13···H3iii | 3.2759 |
O1···N1v | 3.327 (3) | C13···H5i | 3.0174 |
O1···C11v | 3.401 (3) | C14···H1Bv | 2.8448 |
O2···O2iii | 3.285 (3) | C14···H5i | 3.1497 |
O2···N1iii | 3.306 (3) | C14···H8Bi | 3.0966 |
O2···C1ii | 3.472 (3) | C15···H8Bi | 3.2195 |
O2···C1i | 3.542 (3) | C16···H4v | 3.3653 |
O2···C10ii | 3.567 (3) | C16···H13ix | 3.4908 |
N1···O1ii | 3.327 (3) | C16···H14x | 3.3549 |
N1···O2iii | 3.306 (3) | C17···H4xi | 3.3395 |
C1···O2v | 3.472 (3) | C17···H4v | 3.1019 |
C1···O2iv | 3.542 (3) | C17···H12ix | 3.3585 |
C4···Cl2i | 3.544 (3) | C17···H14x | 3.2288 |
C5···Cl2i | 3.478 (3) | C18···H4xi | 3.1738 |
C5···C19ii | 3.302 (3) | C18···H4v | 3.2351 |
C6···C16ii | 3.558 (3) | C18···H13xii | 3.4745 |
C6···C17ii | 3.515 (3) | C20···H3iii | 3.2717 |
C6···C18ii | 3.466 (3) | H1B···C13ii | 2.8981 |
C6···C19ii | 3.479 (3) | H1B···C13iv | 3.5306 |
C6···C20ii | 3.542 (3) | H1B···C14ii | 2.8448 |
C6···C21ii | 3.566 (3) | H1B···H9ii | 2.8715 |
C7···C21ii | 3.399 (3) | H1B···H9iv | 2.6810 |
C8···C15vi | 3.511 (3) | H1B···H10ii | 2.7785 |
C10···O2v | 3.567 (3) | H1B···H10iv | 3.5696 |
C10···C13iv | 3.567 (3) | H2A···O2v | 2.5248 |
C10···C14iv | 3.418 (3) | H2A···O2iv | 2.9081 |
C11···O1ii | 3.401 (3) | H2A···N1v | 3.1678 |
C13···C10i | 3.567 (3) | H2A···N1iv | 3.5686 |
C14···C10i | 3.418 (3) | H2A···C3v | 3.3458 |
C15···C8vi | 3.511 (3) | H2A···C13iv | 3.4463 |
C16···C6v | 3.558 (3) | H2A···H6v | 2.5906 |
C17···C6v | 3.515 (3) | H2A···H6iv | 2.9221 |
C18···Cl1v | 3.531 (3) | H2A···H9iv | 2.6567 |
C18···Cl1iii | 3.372 (3) | H3···Cl2i | 3.4819 |
C18···C6v | 3.466 (3) | H3···C11iii | 3.1482 |
C19···Cl1v | 3.531 (3) | H3···C12iii | 2.9038 |
C19···Cl1iii | 3.298 (3) | H3···C13iii | 3.2759 |
C19···C5v | 3.302 (3) | H3···C20iii | 3.2717 |
C19···C6v | 3.479 (3) | H3···H5ii | 3.0475 |
C20···Cl1iii | 3.483 (2) | H3···H6iii | 3.5623 |
C20···C6v | 3.542 (3) | H3···H7Aiii | 2.5963 |
C21···C6v | 3.566 (3) | H3···H8Bii | 3.0827 |
C21···C7v | 3.399 (3) | H3···H9iii | 3.5808 |
Cl1···H3 | 2.8044 | H4···Cl1vii | 3.3003 |
Cl1···H4 | 2.8011 | H4···C16ii | 3.3653 |
Cl2···H4 | 2.8007 | H4···C17viii | 3.3395 |
O2···H3 | 2.5793 | H4···C17ii | 3.1019 |
O2···H6 | 2.1816 | H4···C18viii | 3.1738 |
N1···H9 | 2.4771 | H4···C18ii | 3.2351 |
C1···H5 | 2.5838 | H4···H12vi | 3.4114 |
C2···H6 | 2.6121 | H4···H13viii | 3.0915 |
C3···H1B | 2.8456 | H4···H13ii | 3.3779 |
C3···H2A | 3.3086 | H4···H14viii | 2.7925 |
C3···H3 | 2.6730 | H4···H14ii | 3.5715 |
C3···H5 | 3.2932 | H5···O2v | 2.7607 |
C3···H6 | 2.6854 | H5···C3v | 2.9718 |
C4···H4 | 3.2775 | H5···C4v | 3.4301 |
C6···H3 | 3.2754 | H5···C9v | 3.3815 |
C8···H1B | 2.6266 | H5···C13iv | 3.0174 |
C8···H2A | 3.1711 | H5···C14iv | 3.1497 |
C8···H3 | 3.2817 | H5···H3v | 3.0475 |
C8···H4 | 3.2853 | H5···H9iv | 2.8161 |
C9···H1B | 2.9757 | H5···H10iv | 3.0576 |
C10···H1B | 2.9791 | H6···O1ii | 3.1444 |
C10···H2A | 2.5432 | H6···O2iii | 2.5402 |
C10···H7A | 3.1414 | H6···C1ii | 3.2859 |
C10···H8B | 2.5054 | H6···H2Aii | 2.5906 |
C10···H9 | 3.1166 | H6···H2Ai | 2.9221 |
C11···H5 | 2.5417 | H6···H3iii | 3.5623 |
C11···H9 | 2.6689 | H6···H6iii | 3.4103 |
C11···H15 | 2.5932 | H7A···Cl2ii | 2.8708 |
C12···H5 | 3.3778 | H7A···O1ii | 2.7154 |
C12···H6 | 2.9216 | H7A···O2iii | 3.3604 |
C12···H10 | 3.2782 | H7A···C4iii | 3.3561 |
C12···H15 | 2.6946 | H7A···C8ii | 3.5798 |
C13···H6 | 3.0440 | H7A···H3iii | 2.5963 |
C13···H7A | 3.1064 | H8B···C4v | 3.2427 |
C13···H8B | 3.1775 | H8B···C14iv | 3.0966 |
C13···H11 | 3.2717 | H8B···C15iv | 3.2195 |
C15···H9 | 3.2633 | H8B···H3v | 3.0827 |
C15···H12 | 2.6531 | H8B···H10iv | 3.1963 |
C16···H11 | 2.6523 | H8B···H11iv | 3.3862 |
C16···H14 | 3.2588 | H9···O2iii | 3.5379 |
C17···H15 | 3.2725 | H9···C1i | 3.0434 |
C18···H12 | 3.2633 | H9···C2i | 3.5215 |
C19···H7A | 2.9380 | H9···C10i | 3.3197 |
C19···H8B | 2.7588 | H9···H1Bv | 2.8715 |
C19···H13 | 3.2701 | H9···H1Bi | 2.6810 |
C20···H7A | 2.7891 | H9···H2Ai | 2.6567 |
C20···H8B | 2.7134 | H9···H3iii | 3.5808 |
C20···H9 | 3.2869 | H9···H5i | 2.8161 |
C20···H11 | 3.3119 | H10···O1vi | 3.1583 |
C20···H12 | 3.3119 | H10···N1i | 3.3222 |
C20···H14 | 3.2890 | H10···C2vi | 3.2427 |
C21···H10 | 3.2781 | H10···C2i | 3.5375 |
C21···H13 | 3.2836 | H10···C3vi | 3.3648 |
C21···H15 | 3.3029 | H10···C8vi | 3.4120 |
H1B···H5 | 3.0755 | H10···C9vi | 3.5560 |
H2A···H5 | 2.2747 | H10···C10i | 3.0585 |
H5···H6 | 2.7173 | H10···H1Bv | 2.7785 |
H5···H7A | 3.3695 | H10···H1Bi | 3.5696 |
H5···H8B | 2.2788 | H10···H5i | 3.0576 |
H5···H9 | 3.4527 | H10···H8Bi | 3.1963 |
H6···H7A | 2.2832 | H11···Cl2v | 3.5822 |
H6···H8B | 2.7639 | H11···Cl2vi | 3.4771 |
H6···H9 | 2.5271 | H11···O1vi | 3.1669 |
H7A···H9 | 3.2912 | H11···C4vi | 3.4591 |
H7A···H15 | 2.4895 | H11···C5vi | 3.4793 |
H8B···H9 | 3.3945 | H11···C6vi | 3.1293 |
H8B···H15 | 2.2403 | H11···C7vi | 2.7047 |
H9···H10 | 2.3596 | H11···C8vi | 2.6837 |
H10···H11 | 2.3125 | H11···C9vi | 3.0717 |
H11···H12 | 2.4808 | H11···H8Bi | 3.3862 |
H12···H13 | 2.3085 | H12···Cl2v | 3.4716 |
H13···H14 | 2.3547 | H12···C6vi | 3.5089 |
H14···H15 | 2.3174 | H12···C17ix | 3.3585 |
Cl1···H4vii | 3.3003 | H12···H4vi | 3.4114 |
Cl1···H14ii | 3.3665 | H12···H12ix | 3.3307 |
Cl1···H15ii | 3.3698 | H12···H13ix | 2.8245 |
Cl2···H3iv | 3.4819 | H12···H14x | 3.0781 |
Cl2···H7Av | 2.8708 | H13···Cl2xi | 2.9779 |
Cl2···H11ii | 3.5822 | H13···C16ix | 3.4908 |
Cl2···H11vi | 3.4771 | H13···C18x | 3.4745 |
Cl2···H12ii | 3.4716 | H13···H4xi | 3.0915 |
Cl2···H13viii | 2.9779 | H13···H4v | 3.3779 |
Cl2···H14viii | 3.1376 | H13···H12ix | 2.8245 |
Cl2···H15v | 3.2700 | H13···H14x | 2.8458 |
O1···H6v | 3.1444 | H13···H15x | 3.1438 |
O1···H7Av | 2.7154 | H14···Cl1v | 3.3665 |
O1···H10vi | 3.1583 | H14···Cl2xi | 3.1376 |
O1···H11vi | 3.1669 | H14···C6xi | 3.5789 |
O2···H2Aii | 2.5248 | H14···C16xii | 3.3549 |
O2···H2Ai | 2.9081 | H14···C17xii | 3.2288 |
O2···H5ii | 2.7607 | H14···H4xi | 2.7925 |
O2···H6iii | 2.5402 | H14···H4v | 3.5715 |
O2···H7Aiii | 3.3604 | H14···H12xii | 3.0781 |
O2···H9iii | 3.5379 | H14···H13xii | 2.8458 |
N1···H2Aii | 3.1678 | H15···Cl1v | 3.3698 |
N1···H2Ai | 3.5686 | H15···Cl2ii | 3.2700 |
N1···H10iv | 3.3222 | H15···C5v | 3.4109 |
C1···H6v | 3.2859 | H15···H13xii | 3.1438 |
C1···H9iv | 3.0434 | ||
C1—O1—C8 | 112.82 (12) | C19—C20—C21 | 118.39 (13) |
C10—N1—C11 | 121.31 (12) | C15—C21—C16 | 121.33 (15) |
O1—C1—C2 | 112.00 (12) | C15—C21—C20 | 119.55 (14) |
C1—C2—C3 | 117.41 (13) | C16—C21—C20 | 119.12 (13) |
C1—C2—C10 | 119.51 (12) | C10—N1—H6 | 119.342 |
C3—C2—C10 | 122.82 (14) | C11—N1—H6 | 119.346 |
O2—C3—C2 | 124.70 (13) | O1—C1—H1B | 109.210 |
O2—C3—C9 | 120.73 (12) | O1—C1—H2A | 109.215 |
C2—C3—C9 | 114.49 (13) | C2—C1—H1B | 109.214 |
C5—C4—C9 | 119.64 (14) | C2—C1—H2A | 109.212 |
Cl1—C5—C4 | 119.70 (12) | H1B—C1—H2A | 107.905 |
Cl1—C5—C6 | 118.85 (11) | C5—C4—H3 | 120.177 |
C4—C5—C6 | 121.43 (12) | C9—C4—H3 | 120.180 |
C5—C6—C7 | 118.60 (13) | C5—C6—H4 | 120.699 |
Cl2—C7—C6 | 119.28 (11) | C7—C6—H4 | 120.701 |
Cl2—C7—C8 | 119.20 (10) | N1—C10—H5 | 116.499 |
C6—C7—C8 | 121.52 (13) | C2—C10—H5 | 116.493 |
O1—C8—C7 | 118.23 (13) | N1—C11—H7A | 108.592 |
O1—C8—C9 | 122.75 (13) | N1—C11—H8B | 108.590 |
C7—C8—C9 | 118.88 (12) | C12—C11—H7A | 108.590 |
C3—C9—C4 | 120.27 (13) | C12—C11—H8B | 108.589 |
C3—C9—C8 | 119.48 (12) | H7A—C11—H8B | 107.556 |
C4—C9—C8 | 119.90 (13) | C12—C13—H9 | 119.454 |
N1—C10—C2 | 127.01 (13) | C14—C13—H9 | 119.453 |
N1—C11—C12 | 114.70 (11) | C13—C14—H10 | 119.980 |
C11—C12—C13 | 121.42 (13) | C15—C14—H10 | 119.986 |
C11—C12—C20 | 118.60 (11) | C14—C15—H11 | 119.628 |
C13—C12—C20 | 119.98 (14) | C21—C15—H11 | 119.617 |
C12—C13—C14 | 121.09 (14) | C17—C16—H12 | 119.532 |
C13—C14—C15 | 120.03 (13) | C21—C16—H12 | 119.524 |
C14—C15—C21 | 120.75 (15) | C16—C17—H13 | 119.901 |
C17—C16—C21 | 120.94 (15) | C18—C17—H13 | 119.892 |
C16—C17—C18 | 120.21 (14) | C17—C18—H14 | 119.822 |
C17—C18—C19 | 120.35 (13) | C19—C18—H14 | 119.826 |
C18—C19—C20 | 120.98 (14) | C18—C19—H15 | 119.511 |
C12—C20—C19 | 123.04 (13) | C20—C19—H15 | 119.512 |
C12—C20—C21 | 118.57 (12) | ||
C1—O1—C8—C7 | 155.30 (11) | O1—C8—C9—C4 | −177.29 (11) |
C1—O1—C8—C9 | −29.15 (17) | C7—C8—C9—C3 | 171.33 (11) |
C8—O1—C1—C2 | 52.17 (15) | C7—C8—C9—C4 | −1.77 (19) |
C8—O1—C1—H1B | −68.9 | N1—C11—C12—C13 | −6.86 (19) |
C8—O1—C1—H2A | 173.3 | N1—C11—C12—C20 | 174.05 (11) |
C10—N1—C11—C12 | −98.17 (16) | H7A—C11—C12—C13 | 114.8 |
C10—N1—C11—H7A | 140.2 | H7A—C11—C12—C20 | −64.3 |
C10—N1—C11—H8B | 23.5 | H8B—C11—C12—C13 | −128.5 |
C11—N1—C10—C2 | −175.34 (12) | H8B—C11—C12—C20 | 52.4 |
C11—N1—C10—H5 | 4.7 | C11—C12—C13—C14 | −178.41 (12) |
H6—N1—C10—C2 | 4.7 | C11—C12—C13—H9 | 1.6 |
H6—N1—C10—H5 | −175.3 | C11—C12—C20—C19 | −2.90 (19) |
H6—N1—C11—C12 | 81.8 | C11—C12—C20—C21 | 177.44 (11) |
H6—N1—C11—H7A | −39.8 | C13—C12—C20—C19 | 178.00 (12) |
H6—N1—C11—H8B | −156.5 | C13—C12—C20—C21 | −1.66 (19) |
O1—C1—C2—C3 | −44.51 (16) | C20—C12—C13—C14 | 0.7 (2) |
O1—C1—C2—C10 | 141.16 (11) | C20—C12—C13—H9 | −179.3 |
H1B—C1—C2—C3 | 76.6 | C12—C13—C14—C15 | 0.5 (3) |
H1B—C1—C2—C10 | −97.7 | C12—C13—C14—H10 | −179.5 |
H2A—C1—C2—C3 | −165.6 | H9—C13—C14—C15 | −179.5 |
H2A—C1—C2—C10 | 20.1 | H9—C13—C14—H10 | 0.5 |
C1—C2—C3—O2 | −171.00 (12) | C13—C14—C15—C21 | −0.6 (3) |
C1—C2—C3—C9 | 12.11 (17) | C13—C14—C15—H11 | 179.4 |
C1—C2—C10—N1 | 171.75 (12) | H10—C14—C15—C21 | 179.4 |
C1—C2—C10—H5 | −8.3 | H10—C14—C15—H11 | −0.6 |
C3—C2—C10—N1 | −2.3 (3) | C14—C15—C21—C16 | −179.85 (13) |
C3—C2—C10—H5 | 177.7 | C14—C15—C21—C20 | −0.4 (3) |
C10—C2—C3—O2 | 3.1 (3) | H11—C15—C21—C16 | 0.1 |
C10—C2—C3—C9 | −173.76 (12) | H11—C15—C21—C20 | 179.6 |
O2—C3—C9—C4 | 8.74 (19) | C17—C16—C21—C15 | 178.49 (13) |
O2—C3—C9—C8 | −164.33 (12) | C17—C16—C21—C20 | −0.9 (3) |
C2—C3—C9—C4 | −174.23 (11) | C21—C16—C17—C18 | −0.1 (3) |
C2—C3—C9—C8 | 12.69 (17) | C21—C16—C17—H13 | 179.9 |
C5—C4—C9—C3 | −172.09 (11) | H12—C16—C17—C18 | 179.9 |
C5—C4—C9—C8 | 1.0 (2) | H12—C16—C17—H13 | −0.1 |
C9—C4—C5—Cl1 | 179.53 (11) | H12—C16—C21—C15 | −1.5 |
C9—C4—C5—C6 | 0.7 (2) | H12—C16—C21—C20 | 179.1 |
H3—C4—C5—Cl1 | −0.5 | C16—C17—C18—C19 | 0.7 (3) |
H3—C4—C5—C6 | −179.3 | C16—C17—C18—H14 | −179.3 |
H3—C4—C9—C3 | 7.9 | H13—C17—C18—C19 | −179.3 |
H3—C4—C9—C8 | −179.0 | H13—C17—C18—H14 | 0.7 |
Cl1—C5—C6—C7 | 179.64 (9) | C17—C18—C19—C20 | −0.3 (3) |
Cl1—C5—C6—H4 | −0.4 | C17—C18—C19—H15 | 179.7 |
C4—C5—C6—C7 | −1.6 (2) | H14—C18—C19—C20 | 179.7 |
C4—C5—C6—H4 | 178.4 | H14—C18—C19—H15 | −0.3 |
C5—C6—C7—Cl2 | 179.84 (11) | C18—C19—C20—C12 | 179.65 (12) |
C5—C6—C7—C8 | 0.70 (19) | C18—C19—C20—C21 | −0.7 (2) |
H4—C6—C7—Cl2 | −0.2 | H15—C19—C20—C12 | −0.3 |
H4—C6—C7—C8 | −179.3 | H15—C19—C20—C21 | 179.3 |
Cl2—C7—C8—O1 | −2.47 (17) | C12—C20—C21—C15 | 1.54 (19) |
Cl2—C7—C8—C9 | −178.20 (8) | C12—C20—C21—C16 | −179.02 (11) |
C6—C7—C8—O1 | 176.67 (12) | C19—C20—C21—C15 | −178.13 (12) |
C6—C7—C8—C9 | 0.94 (19) | C19—C20—C21—C16 | 1.30 (19) |
O1—C8—C9—C3 | −4.19 (19) |
Symmetry codes: (i) x, −y+3/2, z−1/2; (ii) −x+1, y−1/2, −z+3/2; (iii) −x+1, −y+1, −z+1; (iv) x, −y+3/2, z+1/2; (v) −x+1, y+1/2, −z+3/2; (vi) −x+1, −y+2, −z+1; (vii) −x, −y+1, −z+1; (viii) x−1, y, z; (ix) −x+2, −y+2, −z+1; (x) −x+2, y+1/2, −z+3/2; (xi) x+1, y, z; (xii) −x+2, y−1/2, −z+3/2. |
Cg2 is the centroid of the C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H6···O2 | 0.88 | 2.18 | 2.794 (2) | 126 |
N1—H6···O2iii | 0.88 | 2.54 | 3.306 (3) | 146 |
C1—H2A···O2v | 0.99 | 2.52 | 3.472 (3) | 160 |
C15—H11···Cg2vi | 0.95 | 2.77 | 3.682 (3) | 160 |
Symmetry codes: (iii) −x+1, −y+1, −z+1; (v) −x+1, y+1/2, −z+3/2; (vi) −x+1, −y+2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C21H15Cl2NO2 |
Mr | 384.26 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 16.286 (7), 8.910 (6), 12.008 (9) |
β (°) | 102.65 (4) |
V (Å3) | 1700.2 (19) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.40 |
Crystal size (mm) | 0.37 × 0.37 × 0.28 |
Data collection | |
Diffractometer | Rigaku AFC7R diffractometer |
Absorption correction | – |
No. of measured, independent and observed [F2 > 2.0σ(F2)] reflections | 4657, 3875, 3367 |
Rint | 0.083 |
(sin θ/λ)max (Å−1) | 0.651 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.033, 0.083, 1.04 |
No. of reflections | 3875 |
No. of parameters | 235 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.49, −0.53 |
Computer programs: WinAFC (Rigaku, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalStructure (Rigaku, 2010).
Cg2 is the centroid of the C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H6···O2 | 0.88 | 2.18 | 2.794 (2) | 126 |
N1—H6···O2i | 0.88 | 2.54 | 3.306 (3) | 146 |
C1—H2A···O2ii | 0.99 | 2.52 | 3.472 (3) | 160 |
C15—H11···Cg2iii | 0.95 | 2.77 | 3.682 (3) | 160 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, y+1/2, −z+3/2; (iii) −x+1, −y+2, −z+1. |
Acknowledgements
We acknowledge the University of Shizuoka for supporting this study.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Schiff bases of 3-formyl chromones have attracted much attention due to their biological functions such as enzyme inhibition (Khan et al. 2009; Tu et al. 2013). Here we report the crystal structure of the title compound, which was obtained from the condensation reaction of 6,8-dichloro-3-formylchromone with 1-naphthylmethylamine and successive reduction with 2-picoline borane. The structure shows that the H atom of the –OH group is transferred to the N1 atom of the imine, thus forming a zwitterion. As a result, an intramolecular O···H–N [O2···N1 = 2.795 (2) Å], rather than O–H···N, hydrogen bond is formed. The bond distances O2–C3 [1.245 (3) Å], C3–C2 [1.431 (3) Å], C2–C10 [1.377 (3) Å] and C10–N1 [1.329 (3) Å] and torsion angles O2–C3–C2–C10 [3.2 (3)°] and C3–C2–C10–N1 [–2.4 (3)°] in the six-membered ring indicate charge delocalization among the atoms. This effect might be responsible for the preferential reduction of the α,β-unsaturated carbonyl of the synthetic intermediate, rather than reduction of the imine. The dihedral angle between the naphthalene ring and the benzene part of the 2H-chromen ring is 87.41 (4)°. In the crystal, the molecules are packed through intermolecular N–H···O, as shown in Figure 2, π···π, C-Cl···π, C-H···π and C-H···O interactions.