organic compounds
4′-(1H-Imidazol-2-yl)-3′-[(1H-indol-3-yl)carbonyl]-1′-methyl-2-oxospiro[indoline-3,2′-pyrrolidine]-3′-carbonitrile 0.15-hydrate
aSri Ram Engineering College, Chennai 602 024, India, bOrganic Chemistry Division, Central Leather Research Institute, Adyar, Chennai 600 020, India, and cDepartment of Physics, RKM Vivekananda College (Autonomous), Chennai 600 004, India
*Correspondence e-mail: ksethusankar@yahoo.co.in
In the title compound, C25H20N6O2·0.15H2O, the dihedral angles between the least-squares planes of the indole and pyrrolidine rings and between the oxindole and imidazole rings are 77.66 (7) and 45.31 (7)°, respectively. The pyrrolidine ring and the fused five-membered pyrrolidine ring of the oxindole moiety exhibit twisted conformations. The amide N atom is involved in both intra- and intermolecular hydrogen bonding, having a bifurcated character. The molecular structure is characterized by an intramolecular N—H⋯O hydrogen bond, which generates an S(7) ring motif while an intermolecular N—H⋯O hydrogen bond links the organic and solvent water molecules. In the crystal, N—H⋯N hydrogen bonds generate a zigzag chain running parallel to c-axis direction. The H atoms of the solvent water molecule were not located.
Related literature
For background to indole derivatives and their biological activity, see: Rudrangi et al. (2011). For puckering parameters, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987). For graph-set notation, see: Bernstein et al. (1995). For a related structure, see: Inglebert et al. (2013).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536813023246/rk2411sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813023246/rk2411Isup2.hkl
A mixture of isatin (1 mmol), sarcosine (1.2 mmol) and 3-(1H-imidazol-2-yl)-2-(1H-indole-3-carbonyl)acrylonitrile (1 mmol) were refluxed in ethanol (30 ml). After completion of the reaction as evidenced by TLC analysis, the reaction mixture was poured into ice–water, the resulting solid was filtered off and purified by
using ethyl acetate : petroleum ether (6 : 4) as an to afford pure product.Positions of hydrogen atoms were localized from the difference electron density maps and their distances were geometrically constrained. The H atoms bound to the C atoms were treated as riding atoms with d(C—H) = 0.93Å for aromatic H, d(C—H) = 0.97Å for methylene H with Uiso(H) = 1.2Ueq(C) and and d(C—H) = 0.96Å and Uiso(H) = 1.5Ueq(C) for methyl H atoms. The rotation angles for methyl groups were optimized by least squares. The N bonded H atoms were refined freely.
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C25H20N6O2·0.15H2O | F(000) = 916.8 |
Mr = 439.17 | Dx = 1.389 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 4819 reflections |
a = 8.650 (5) Å | θ = 2.4–27.5° |
b = 16.952 (5) Å | µ = 0.09 mm−1 |
c = 14.438 (5) Å | T = 295 K |
β = 97.161 (5)° | Block, colourless |
V = 2100.6 (15) Å3 | 0.35 × 0.30 × 0.25 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 4819 independent reflections |
Radiation source: fine–focus sealed tube | 3757 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.024 |
ω and ϕ scans | θmax = 27.5°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | h = −11→10 |
Tmin = 0.968, Tmax = 0.977 | k = −21→22 |
22198 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0524P)2 + 0.5356P] where P = (Fo2 + 2Fc2)/3 |
4819 reflections | (Δ/σ)max < 0.001 |
320 parameters | Δρmax = 0.21 e Å−3 |
3 restraints | Δρmin = −0.18 e Å−3 |
C25H20N6O2·0.15H2O | V = 2100.6 (15) Å3 |
Mr = 439.17 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.650 (5) Å | µ = 0.09 mm−1 |
b = 16.952 (5) Å | T = 295 K |
c = 14.438 (5) Å | 0.35 × 0.30 × 0.25 mm |
β = 97.161 (5)° |
Bruker Kappa APEXII CCD diffractometer | 4819 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 3757 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.977 | Rint = 0.024 |
22198 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 3 restraints |
wR(F2) = 0.110 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.21 e Å−3 |
4819 reflections | Δρmin = −0.18 e Å−3 |
320 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.37937 (14) | 0.07447 (6) | 0.49050 (7) | 0.0487 (3) | |
O2 | 0.60471 (12) | 0.18182 (6) | 0.64371 (8) | 0.0489 (3) | |
N3 | 0.33938 (14) | 0.30031 (7) | 0.63558 (8) | 0.0366 (3) | |
N2 | 0.66582 (14) | 0.25656 (8) | 0.52028 (9) | 0.0406 (3) | |
N1 | 0.38442 (14) | 0.21594 (7) | 0.22422 (8) | 0.0380 (3) | |
C15 | 0.40978 (15) | 0.26985 (7) | 0.55702 (9) | 0.0315 (3) | |
C10 | 0.28828 (14) | 0.20355 (7) | 0.52052 (9) | 0.0292 (3) | |
N6 | 0.12101 (15) | 0.03867 (7) | 0.61150 (9) | 0.0432 (3) | |
N5 | −0.02773 (15) | 0.14222 (8) | 0.61946 (11) | 0.0508 (3) | |
C1 | 0.42119 (15) | 0.09829 (8) | 0.29638 (9) | 0.0318 (3) | |
C16 | 0.44630 (15) | 0.33152 (8) | 0.48826 (9) | 0.0340 (3) | |
C11 | 0.25875 (15) | 0.16641 (8) | 0.61571 (9) | 0.0326 (3) | |
H11 | 0.3466 | 0.1309 | 0.6343 | 0.039* | |
C6 | 0.43006 (16) | 0.13884 (8) | 0.21219 (9) | 0.0352 (3) | |
C9 | 0.34886 (14) | 0.13897 (8) | 0.45599 (9) | 0.0313 (3) | |
C8 | 0.36716 (15) | 0.15545 (8) | 0.36003 (9) | 0.0316 (3) | |
C12 | 0.27540 (17) | 0.23523 (8) | 0.68508 (10) | 0.0399 (3) | |
H12A | 0.1749 | 0.2494 | 0.7034 | 0.048* | |
H12B | 0.3452 | 0.2213 | 0.7406 | 0.048* | |
C7 | 0.34692 (16) | 0.22545 (8) | 0.31089 (9) | 0.0359 (3) | |
H7 | 0.3123 | 0.2724 | 0.3345 | 0.043* | |
C21 | 0.59667 (16) | 0.31921 (8) | 0.46655 (10) | 0.0368 (3) | |
C2 | 0.46065 (17) | 0.01848 (8) | 0.30176 (10) | 0.0386 (3) | |
H2 | 0.4569 | −0.0096 | 0.3568 | 0.046* | |
C22 | 0.57128 (15) | 0.22878 (8) | 0.58113 (10) | 0.0359 (3) | |
C13 | 0.14541 (16) | 0.24026 (8) | 0.47441 (9) | 0.0361 (3) | |
C3 | 0.50525 (19) | −0.01783 (9) | 0.22397 (11) | 0.0478 (4) | |
H3 | 0.5299 | −0.0712 | 0.2266 | 0.057* | |
C23 | 0.11522 (16) | 0.11799 (8) | 0.61483 (9) | 0.0351 (3) | |
C19 | 0.5689 (2) | 0.42550 (10) | 0.36056 (12) | 0.0552 (4) | |
H19 | 0.6079 | 0.4569 | 0.3160 | 0.066* | |
N4 | 0.03167 (16) | 0.26634 (9) | 0.43965 (10) | 0.0581 (4) | |
C5 | 0.47677 (19) | 0.10239 (10) | 0.13400 (10) | 0.0467 (4) | |
H5 | 0.4824 | 0.1302 | 0.0790 | 0.056* | |
C20 | 0.66026 (19) | 0.36546 (10) | 0.40259 (11) | 0.0476 (4) | |
H20 | 0.7607 | 0.3566 | 0.3883 | 0.057* | |
C4 | 0.5143 (2) | 0.02372 (10) | 0.14131 (11) | 0.0512 (4) | |
H4 | 0.5462 | −0.0023 | 0.0903 | 0.061* | |
C17 | 0.35815 (18) | 0.39336 (8) | 0.44843 (11) | 0.0424 (3) | |
H17 | 0.2594 | 0.4036 | 0.4648 | 0.051* | |
C18 | 0.4207 (2) | 0.44015 (9) | 0.38310 (12) | 0.0524 (4) | |
H18 | 0.3625 | 0.4815 | 0.3544 | 0.063* | |
C25 | −0.1158 (2) | 0.07419 (10) | 0.61833 (14) | 0.0584 (5) | |
H25 | −0.2227 | 0.0728 | 0.6207 | 0.070* | |
C14 | 0.4324 (2) | 0.35557 (10) | 0.69609 (12) | 0.0555 (4) | |
H14A | 0.5180 | 0.3281 | 0.7306 | 0.083* | |
H14B | 0.3690 | 0.3790 | 0.7387 | 0.083* | |
H14C | 0.4718 | 0.3961 | 0.6589 | 0.083* | |
C24 | −0.0261 (2) | 0.01074 (10) | 0.61340 (12) | 0.0513 (4) | |
H24 | −0.0576 | −0.0418 | 0.6116 | 0.062* | |
O1W | 0.2610 (10) | −0.0987 (6) | 0.5729 (7) | 0.082 (3) | 0.15 |
H2A | 0.7632 (12) | 0.2407 (9) | 0.5205 (12) | 0.052 (5)* | |
H1A | 0.393 (2) | 0.2564 (8) | 0.1861 (11) | 0.061 (5)* | |
H6A | 0.2060 (17) | 0.0112 (11) | 0.6021 (15) | 0.075 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0721 (8) | 0.0369 (6) | 0.0403 (5) | 0.0139 (5) | 0.0190 (5) | 0.0060 (4) |
O2 | 0.0363 (6) | 0.0479 (6) | 0.0605 (7) | 0.0013 (5) | −0.0018 (5) | 0.0177 (5) |
N3 | 0.0386 (6) | 0.0330 (6) | 0.0384 (6) | −0.0033 (5) | 0.0063 (5) | −0.0054 (5) |
N2 | 0.0267 (6) | 0.0464 (7) | 0.0486 (7) | 0.0010 (5) | 0.0047 (5) | 0.0038 (5) |
N1 | 0.0448 (7) | 0.0351 (6) | 0.0344 (6) | 0.0017 (5) | 0.0053 (5) | 0.0064 (5) |
C15 | 0.0275 (6) | 0.0294 (6) | 0.0374 (6) | −0.0001 (5) | 0.0035 (5) | 0.0001 (5) |
C10 | 0.0257 (6) | 0.0300 (6) | 0.0324 (6) | 0.0002 (5) | 0.0053 (5) | 0.0000 (5) |
N6 | 0.0462 (8) | 0.0346 (7) | 0.0494 (7) | −0.0044 (6) | 0.0088 (6) | −0.0035 (5) |
N5 | 0.0386 (7) | 0.0406 (7) | 0.0776 (9) | −0.0088 (6) | 0.0247 (6) | −0.0085 (6) |
C1 | 0.0292 (6) | 0.0354 (7) | 0.0315 (6) | −0.0020 (5) | 0.0064 (5) | 0.0007 (5) |
C16 | 0.0333 (7) | 0.0297 (7) | 0.0389 (7) | −0.0044 (5) | 0.0041 (5) | −0.0004 (5) |
C11 | 0.0324 (7) | 0.0348 (7) | 0.0316 (6) | −0.0025 (5) | 0.0077 (5) | −0.0014 (5) |
C6 | 0.0350 (7) | 0.0360 (7) | 0.0350 (7) | −0.0007 (6) | 0.0059 (5) | 0.0028 (5) |
C9 | 0.0294 (6) | 0.0312 (7) | 0.0339 (6) | 0.0005 (5) | 0.0060 (5) | 0.0006 (5) |
C8 | 0.0295 (6) | 0.0323 (7) | 0.0334 (6) | −0.0004 (5) | 0.0059 (5) | 0.0003 (5) |
C12 | 0.0425 (8) | 0.0419 (8) | 0.0364 (7) | −0.0086 (6) | 0.0098 (6) | −0.0073 (6) |
C7 | 0.0355 (7) | 0.0358 (7) | 0.0361 (7) | 0.0022 (6) | 0.0027 (5) | −0.0003 (5) |
C21 | 0.0346 (7) | 0.0364 (7) | 0.0393 (7) | −0.0054 (6) | 0.0043 (5) | −0.0027 (6) |
C2 | 0.0435 (8) | 0.0353 (7) | 0.0384 (7) | 0.0014 (6) | 0.0103 (6) | 0.0040 (6) |
C22 | 0.0288 (7) | 0.0349 (7) | 0.0428 (7) | −0.0029 (5) | −0.0006 (5) | 0.0002 (6) |
C13 | 0.0313 (7) | 0.0401 (8) | 0.0371 (7) | 0.0006 (6) | 0.0054 (5) | −0.0046 (6) |
C3 | 0.0597 (10) | 0.0378 (8) | 0.0474 (8) | 0.0095 (7) | 0.0127 (7) | −0.0012 (6) |
C23 | 0.0393 (8) | 0.0335 (7) | 0.0343 (6) | −0.0058 (6) | 0.0117 (5) | −0.0038 (5) |
C19 | 0.0660 (11) | 0.0504 (10) | 0.0516 (9) | −0.0112 (8) | 0.0166 (8) | 0.0112 (7) |
N4 | 0.0386 (7) | 0.0737 (10) | 0.0595 (8) | 0.0149 (7) | −0.0037 (6) | −0.0056 (7) |
C5 | 0.0568 (9) | 0.0520 (9) | 0.0331 (7) | 0.0037 (7) | 0.0129 (6) | 0.0051 (6) |
C20 | 0.0454 (9) | 0.0515 (9) | 0.0480 (8) | −0.0071 (7) | 0.0141 (7) | 0.0021 (7) |
C4 | 0.0645 (11) | 0.0526 (10) | 0.0391 (8) | 0.0101 (8) | 0.0165 (7) | −0.0054 (7) |
C17 | 0.0436 (8) | 0.0324 (7) | 0.0513 (8) | 0.0022 (6) | 0.0066 (6) | 0.0023 (6) |
C18 | 0.0642 (11) | 0.0359 (8) | 0.0564 (9) | 0.0003 (7) | 0.0048 (8) | 0.0115 (7) |
C25 | 0.0441 (9) | 0.0502 (10) | 0.0849 (13) | −0.0177 (8) | 0.0239 (8) | −0.0101 (9) |
C14 | 0.0714 (11) | 0.0435 (9) | 0.0515 (9) | −0.0174 (8) | 0.0078 (8) | −0.0134 (7) |
C24 | 0.0586 (10) | 0.0394 (8) | 0.0569 (9) | −0.0187 (8) | 0.0116 (7) | −0.0048 (7) |
O1W | 0.063 (5) | 0.070 (6) | 0.102 (7) | 0.036 (5) | −0.028 (5) | −0.039 (5) |
O1—C9 | 1.2168 (16) | C11—H11 | 0.9800 |
O2—C22 | 1.2119 (17) | C6—C5 | 1.390 (2) |
N3—C15 | 1.4478 (17) | C9—C8 | 1.4413 (18) |
N3—C14 | 1.4538 (19) | C8—C7 | 1.3826 (19) |
N3—C12 | 1.4604 (18) | C12—H12A | 0.9700 |
N2—C22 | 1.3570 (19) | C12—H12B | 0.9700 |
N2—C21 | 1.4043 (19) | C7—H7 | 0.9300 |
N2—H2A | 0.884 (9) | C21—C20 | 1.377 (2) |
N1—C7 | 1.3410 (18) | C2—C3 | 1.377 (2) |
N1—C6 | 1.3825 (19) | C2—H2 | 0.9300 |
N1—H1A | 0.888 (9) | C13—N4 | 1.1367 (19) |
C15—C16 | 1.5022 (18) | C3—C4 | 1.396 (2) |
C15—C22 | 1.561 (2) | C3—H3 | 0.9300 |
C15—C10 | 1.5835 (18) | C19—C20 | 1.382 (2) |
C10—C13 | 1.4671 (19) | C19—C18 | 1.383 (3) |
C10—C11 | 1.5615 (18) | C19—H19 | 0.9300 |
C10—C9 | 1.5693 (18) | C5—C4 | 1.373 (2) |
N6—C23 | 1.3467 (19) | C5—H5 | 0.9300 |
N6—C24 | 1.361 (2) | C20—H20 | 0.9300 |
N6—H6A | 0.895 (9) | C4—H4 | 0.9300 |
N5—C23 | 1.313 (2) | C17—C18 | 1.393 (2) |
N5—C25 | 1.381 (2) | C17—H17 | 0.9300 |
C1—C2 | 1.395 (2) | C18—H18 | 0.9300 |
C1—C6 | 1.4068 (18) | C25—C24 | 1.333 (2) |
C1—C8 | 1.4522 (18) | C25—H25 | 0.9300 |
C16—C17 | 1.3790 (19) | C14—H14A | 0.9600 |
C16—C21 | 1.391 (2) | C14—H14B | 0.9600 |
C11—C23 | 1.4871 (19) | C14—H14C | 0.9600 |
C11—C12 | 1.5325 (19) | C24—H24 | 0.9300 |
C15—N3—C14 | 116.43 (12) | H12A—C12—H12B | 108.8 |
C15—N3—C12 | 109.63 (11) | N1—C7—C8 | 110.23 (12) |
C14—N3—C12 | 114.08 (12) | N1—C7—H7 | 124.9 |
C22—N2—C21 | 111.75 (12) | C8—C7—H7 | 124.9 |
C22—N2—H2A | 122.9 (11) | C20—C21—C16 | 121.90 (14) |
C21—N2—H2A | 124.9 (11) | C20—C21—N2 | 128.52 (14) |
C7—N1—C6 | 109.69 (11) | C16—C21—N2 | 109.56 (12) |
C7—N1—H1A | 122.3 (12) | C3—C2—C1 | 118.65 (13) |
C6—N1—H1A | 127.3 (12) | C3—C2—H2 | 120.7 |
N3—C15—C16 | 114.40 (11) | C1—C2—H2 | 120.7 |
N3—C15—C22 | 115.88 (11) | O2—C22—N2 | 127.13 (13) |
C16—C15—C22 | 101.64 (10) | O2—C22—C15 | 125.67 (13) |
N3—C15—C10 | 100.80 (10) | N2—C22—C15 | 107.20 (12) |
C16—C15—C10 | 117.35 (11) | N4—C13—C10 | 177.44 (16) |
C22—C15—C10 | 107.23 (10) | C2—C3—C4 | 121.51 (14) |
C13—C10—C11 | 110.45 (11) | C2—C3—H3 | 119.2 |
C13—C10—C9 | 110.56 (10) | C4—C3—H3 | 119.2 |
C11—C10—C9 | 110.16 (10) | N5—C23—N6 | 110.71 (12) |
C13—C10—C15 | 109.67 (11) | N5—C23—C11 | 128.15 (13) |
C11—C10—C15 | 99.66 (10) | N6—C23—C11 | 121.11 (13) |
C9—C10—C15 | 115.84 (10) | C20—C19—C18 | 121.66 (15) |
C23—N6—C24 | 107.91 (13) | C20—C19—H19 | 119.2 |
C23—N6—H6A | 124.1 (14) | C18—C19—H19 | 119.2 |
C24—N6—H6A | 127.6 (14) | C4—C5—C6 | 117.31 (13) |
C23—N5—C25 | 105.06 (14) | C4—C5—H5 | 121.3 |
C2—C1—C6 | 118.86 (12) | C6—C5—H5 | 121.3 |
C2—C1—C8 | 135.04 (12) | C21—C20—C19 | 117.34 (15) |
C6—C1—C8 | 106.10 (12) | C21—C20—H20 | 121.3 |
C17—C16—C21 | 120.26 (13) | C19—C20—H20 | 121.3 |
C17—C16—C15 | 130.83 (13) | C5—C4—C3 | 121.18 (14) |
C21—C16—C15 | 108.91 (12) | C5—C4—H4 | 119.4 |
C23—C11—C12 | 115.86 (11) | C3—C4—H4 | 119.4 |
C23—C11—C10 | 116.30 (11) | C16—C17—C18 | 118.30 (15) |
C12—C11—C10 | 104.83 (11) | C16—C17—H17 | 120.9 |
C23—C11—H11 | 106.4 | C18—C17—H17 | 120.9 |
C12—C11—H11 | 106.4 | C19—C18—C17 | 120.45 (15) |
C10—C11—H11 | 106.4 | C19—C18—H18 | 119.8 |
N1—C6—C5 | 129.68 (13) | C17—C18—H18 | 119.8 |
N1—C6—C1 | 107.83 (12) | C24—C25—N5 | 110.53 (15) |
C5—C6—C1 | 122.49 (13) | C24—C25—H25 | 124.7 |
O1—C9—C8 | 121.56 (12) | N5—C25—H25 | 124.7 |
O1—C9—C10 | 117.08 (11) | N3—C14—H14A | 109.5 |
C8—C9—C10 | 121.35 (11) | N3—C14—H14B | 109.5 |
C7—C8—C9 | 129.61 (12) | H14A—C14—H14B | 109.5 |
C7—C8—C1 | 106.14 (11) | N3—C14—H14C | 109.5 |
C9—C8—C1 | 124.17 (12) | H14A—C14—H14C | 109.5 |
N3—C12—C11 | 105.41 (11) | H14B—C14—H14C | 109.5 |
N3—C12—H12A | 110.7 | C25—C24—N6 | 105.79 (14) |
C11—C12—H12A | 110.7 | C25—C24—H24 | 127.1 |
N3—C12—H12B | 110.7 | N6—C24—H24 | 127.1 |
C11—C12—H12B | 110.7 | ||
C14—N3—C15—C16 | −62.11 (16) | C15—N3—C12—C11 | −19.05 (14) |
C12—N3—C15—C16 | 166.52 (11) | C14—N3—C12—C11 | −151.66 (13) |
C14—N3—C15—C22 | 55.69 (16) | C23—C11—C12—N3 | −139.92 (12) |
C12—N3—C15—C22 | −75.69 (14) | C10—C11—C12—N3 | −10.31 (14) |
C14—N3—C15—C10 | 171.01 (12) | C6—N1—C7—C8 | 0.44 (16) |
C12—N3—C15—C10 | 39.64 (13) | C9—C8—C7—N1 | 176.60 (13) |
N3—C15—C10—C13 | 72.92 (12) | C1—C8—C7—N1 | −0.36 (15) |
C16—C15—C10—C13 | −51.98 (14) | C17—C16—C21—C20 | −2.7 (2) |
C22—C15—C10—C13 | −165.45 (11) | C15—C16—C21—C20 | 177.84 (13) |
N3—C15—C10—C11 | −43.01 (11) | C17—C16—C21—N2 | 175.99 (12) |
C16—C15—C10—C11 | −167.91 (11) | C15—C16—C21—N2 | −3.47 (15) |
C22—C15—C10—C11 | 78.62 (12) | C22—N2—C21—C20 | 175.24 (14) |
N3—C15—C10—C9 | −161.10 (10) | C22—N2—C21—C16 | −3.34 (16) |
C16—C15—C10—C9 | 74.00 (14) | C6—C1—C2—C3 | −0.7 (2) |
C22—C15—C10—C9 | −39.47 (14) | C8—C1—C2—C3 | 178.51 (15) |
N3—C15—C16—C17 | −45.93 (19) | C21—N2—C22—O2 | −170.64 (14) |
C22—C15—C16—C17 | −171.58 (14) | C21—N2—C22—C15 | 8.35 (15) |
C10—C15—C16—C17 | 71.86 (19) | N3—C15—C22—O2 | 44.68 (19) |
N3—C15—C16—C21 | 133.45 (12) | C16—C15—C22—O2 | 169.35 (14) |
C22—C15—C16—C21 | 7.80 (14) | C10—C15—C22—O2 | −66.94 (17) |
C10—C15—C16—C21 | −108.75 (13) | N3—C15—C22—N2 | −134.34 (12) |
C13—C10—C11—C23 | 46.36 (16) | C16—C15—C22—N2 | −9.67 (13) |
C9—C10—C11—C23 | −76.07 (14) | C10—C15—C22—N2 | 114.04 (12) |
C15—C10—C11—C23 | 161.69 (11) | C1—C2—C3—C4 | 1.2 (2) |
C13—C10—C11—C12 | −82.99 (13) | C25—N5—C23—N6 | −0.39 (18) |
C9—C10—C11—C12 | 154.58 (11) | C25—N5—C23—C11 | −178.58 (14) |
C15—C10—C11—C12 | 32.35 (12) | C24—N6—C23—N5 | 0.46 (17) |
C7—N1—C6—C5 | 179.16 (15) | C24—N6—C23—C11 | 178.79 (12) |
C7—N1—C6—C1 | −0.33 (16) | C12—C11—C23—N5 | 41.7 (2) |
C2—C1—C6—N1 | 179.51 (12) | C10—C11—C23—N5 | −82.13 (18) |
C8—C1—C6—N1 | 0.10 (15) | C12—C11—C23—N6 | −136.32 (14) |
C2—C1—C6—C5 | 0.0 (2) | C10—C11—C23—N6 | 99.85 (15) |
C8—C1—C6—C5 | −179.43 (13) | N1—C6—C5—C4 | −179.14 (15) |
C13—C10—C9—O1 | −129.88 (13) | C1—C6—C5—C4 | 0.3 (2) |
C11—C10—C9—O1 | −7.51 (16) | C16—C21—C20—C19 | 0.3 (2) |
C15—C10—C9—O1 | 104.60 (14) | N2—C21—C20—C19 | −178.08 (15) |
C13—C10—C9—C8 | 50.01 (16) | C18—C19—C20—C21 | 1.5 (3) |
C11—C10—C9—C8 | 172.37 (11) | C6—C5—C4—C3 | 0.2 (3) |
C15—C10—C9—C8 | −75.52 (15) | C2—C3—C4—C5 | −0.9 (3) |
O1—C9—C8—C7 | −176.01 (14) | C21—C16—C17—C18 | 3.1 (2) |
C10—C9—C8—C7 | 4.1 (2) | C15—C16—C17—C18 | −177.58 (14) |
O1—C9—C8—C1 | 0.5 (2) | C20—C19—C18—C17 | −1.1 (3) |
C10—C9—C8—C1 | −179.41 (11) | C16—C17—C18—C19 | −1.3 (2) |
C2—C1—C8—C7 | −179.12 (15) | C23—N5—C25—C24 | 0.2 (2) |
C6—C1—C8—C7 | 0.15 (14) | N5—C25—C24—N6 | 0.1 (2) |
C2—C1—C8—C9 | 3.7 (2) | C23—N6—C24—C25 | −0.32 (19) |
C6—C1—C8—C9 | −177.02 (12) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N5i | 0.89 (1) | 2.13 (1) | 2.9889 (19) | 164 (2) |
N6—H6A···O1W | 0.90 (1) | 1.98 (2) | 2.714 (8) | 138 (2) |
N6—H6A···O1 | 0.90 (1) | 2.57 (2) | 3.064 (2) | 116 (2) |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1A···N5i | 0.888 (9) | 2.126 (10) | 2.9889 (19) | 163.9 (17) |
N6—H6A···O1W | 0.895 (9) | 1.981 (17) | 2.714 (8) | 138.2 (18) |
N6—H6A···O1 | 0.895 (9) | 2.569 (19) | 3.064 (2) | 115.6 (16) |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
Acknowledgements
The authors gratefully acknowledge Dr Babu Varghese, SAIF, IIT, Chennai, India, for the data collection.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Oxindoles are endogenous aromatic organic compounds that are found in the tissues and body fluids of mammals and in the natural products of some plants. Oxindoles exhibit an extensive range of biological effects, which include anticancer, anti–inflammatory, antiviral, antibacterial, antihypertensive and anticonvulsant activities. Oxindoles are also used to inhibit the replication of HIV and combat the infections that are caused by drug–resistant, drug–sensitive and mutant strains of HIV (Rudrangi et al., 2011).
The title compound consists of a pyrrolidine ring connected to an imidazole at C11, an oxindole ring system at C15, a methyl group at N3 and an indole unit at C10 via carbonyl group. In addition, the asymmetric unit contains a 0.15 occupancy water molecule. The H atoms of the partial occupancy water molecules are neither located nor included in the refinement. The title structure exhibits structural similarities with the previously reported structure (Inglebert et al., 2013).
The pyrrolidine ring adopts a twisted conformation with puckering parameters q(2) = 0.4351 (14)Å and ϕ(2) = 309.66 (19)°. Pyrrole ring in the oxindole unit also having twisted conformation with puckering parameters q(2) = 0.0931 (15)Å and ϕ(2) = 304.2 (9)°. The least square plane of oxindole unit makes dihedral angles of 78.50 (4)° and 44.28 (5)° with the pyrrolidine and imidazole, respectively. The indole unit is essentially planar - maximum deviation = 0.0138 (17)Å for the C2 atom] and is oriented at a least square plane that makes dihedral angles of 51.42 (4)°, 39.92 (4)° and 70.15 (4)°, with the oxindole unit, pyrrolidine and imidazole rings, respectively.
The cyano bond distance C13≡N2 agrees well with the reported value of 1.138 (7)Å (Allen et al., 1987). The sum of the angle around atom N3 (340.14 (35)°) is in accordance with sp3 hybridization. The amide N atom shows bifurcated intramolecular hydrogen bond (N—H···O) with an O atom of the carbonyl group and an intermolecuar hydrogen (N—H···O) bond with the 0.15 occupancy solvent water molecule. In addition, the classical intermolecular N—H···N hydrogen bonds generate a zigzag chain running parallel to c axis.