metal-organic compounds
Dibromidobis(2-methyl-1H-benzimidazole-κN3)cadmium
aKey Laboratory of Advanced Materials, Qingdao University of Science and Technology, Qingdao 266042, People's Republic of China
*Correspondence e-mail: qdplastics@163.com
In the title compound, [CdBr2(C8H8N2)2], the CdII atom has a distorted tetrahedral coordination formed by the two imino N atoms of two 2-methylbenzimidazole ligands and two terminal bromide ligands. The CdII atom is slightly out of the benzimidazole planes by 0.320 (3) and 0.210 (3) Å. The dihedral angle between the benzimidazole planes is 71.6 (2)°. In the crystal, molecules are linked by N—H⋯Br hydrogen bonds into puckered layers parallel to (001).
Related literature
For background to benzimidazole, see: Roderick et al. (1972). For related crystal structures, see: Barros-García et al. (2005); Wang et al. (2010); Yang et al. (2011).
Experimental
Crystal data
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Data collection: RAPID-AUTO (Rigaku, 2004); cell RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536813024549/kq2008sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813024549/kq2008Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813024549/kq2008Isup3.cdx
The ligand 2-methyl-benzimidazole (0.02 mmol) in ethanol (10 mL) was added dropwise to a ethanol (10 mL) of CdBr2 (0.01 mmol). The resulting solution was allowed to stand at room temperature. After one week colorless crystals with good quality were obtained from the filtrate and dried in air. Analysis, calculated for C16H16Br2CdN4: C 35.82, H 3.01, N 10.44%; Found: C 35.68, H 3.02, N 10.47%.
All hydrogen atoms were placed in calculated positions with N—H = 0.86 Å and C—H = 0.93 (aryl-H) and 0.96 (methyl-H) Å and refined in the riding model with fixed isotropic displacement parameters [Uiso(H) = 1.2Ueq(N or C)].
Data collection: RAPID-AUTO (Rigaku, 2004); cell
RAPID-AUTO (Rigaku, 2004); data reduction: RAPID-AUTO (Rigaku, 2004); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).[CdBr2(C8H8N2)2] | F(000) = 1032 |
Mr = 536.54 | Dx = 1.951 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3275 reflections |
a = 10.007 (9) Å | θ = 2.5–26.6° |
b = 14.747 (12) Å | µ = 5.57 mm−1 |
c = 12.399 (11) Å | T = 296 K |
β = 93.088 (14)° | Block, colorless |
V = 1827 (3) Å3 | 0.22 × 0.18 × 0.16 mm |
Z = 4 |
Rigaku R-AXIS Spider diffractometer | 2748 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.032 |
Graphite monochromator | θmax = 26.0°, θmin = 2.0° |
ω scans | h = −12→10 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −18→14 |
Tmin = 0.374, Tmax = 0.469 | l = −15→14 |
9698 measured reflections | 13 standard reflections every 0 reflections |
3585 independent reflections | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.033 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.0407P)2] where P = (Fo2 + 2Fc2)/3 |
3585 reflections | (Δ/σ)max = 0.001 |
210 parameters | Δρmax = 0.39 e Å−3 |
0 restraints | Δρmin = −1.02 e Å−3 |
[CdBr2(C8H8N2)2] | V = 1827 (3) Å3 |
Mr = 536.54 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.007 (9) Å | µ = 5.57 mm−1 |
b = 14.747 (12) Å | T = 296 K |
c = 12.399 (11) Å | 0.22 × 0.18 × 0.16 mm |
β = 93.088 (14)° |
Rigaku R-AXIS Spider diffractometer | 2748 reflections with I > 2σ(I) |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | Rint = 0.032 |
Tmin = 0.374, Tmax = 0.469 | 13 standard reflections every 0 reflections |
9698 measured reflections | intensity decay: none |
3585 independent reflections |
R[F2 > 2σ(F2)] = 0.033 | 0 restraints |
wR(F2) = 0.077 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.39 e Å−3 |
3585 reflections | Δρmin = −1.02 e Å−3 |
210 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.3592 (3) | 0.96335 (19) | 0.8577 (2) | 0.0362 (7) | |
N2 | 0.5028 (4) | 0.8661 (2) | 0.9341 (3) | 0.0485 (9) | |
H2 | 0.5712 | 0.8311 | 0.9428 | 0.058* | |
N3 | 0.0723 (3) | 1.01679 (18) | 0.6820 (2) | 0.0339 (7) | |
N4 | −0.1049 (3) | 0.93220 (19) | 0.6357 (2) | 0.0417 (8) | |
H4 | −0.1554 | 0.8851 | 0.6290 | 0.050* | |
Br1 | 0.40130 (5) | 1.14156 (3) | 0.60773 (4) | 0.06071 (16) | |
Br2 | 0.20546 (5) | 1.20099 (3) | 0.88850 (4) | 0.06367 (17) | |
C1 | 0.4087 (4) | 0.8806 (2) | 1.0086 (3) | 0.0409 (9) | |
C2 | 0.3939 (5) | 0.8457 (3) | 1.1109 (3) | 0.0531 (12) | |
H2A | 0.4561 | 0.8060 | 1.1434 | 0.064* | |
C3 | 0.2816 (6) | 0.8730 (3) | 1.1622 (4) | 0.0626 (14) | |
H3 | 0.2681 | 0.8511 | 1.2311 | 0.075* | |
C4 | 0.1873 (6) | 0.9326 (3) | 1.1139 (4) | 0.0633 (13) | |
H4A | 0.1119 | 0.9482 | 1.1505 | 0.076* | |
C5 | 0.2045 (5) | 0.9687 (3) | 1.0127 (3) | 0.0535 (11) | |
H5 | 0.1432 | 1.0094 | 0.9812 | 0.064* | |
C6 | 0.3175 (4) | 0.9417 (2) | 0.9597 (3) | 0.0368 (9) | |
C7 | 0.4708 (4) | 0.9156 (2) | 0.8454 (3) | 0.0408 (9) | |
C8 | 0.5489 (5) | 0.9139 (3) | 0.7478 (4) | 0.0620 (13) | |
H8A | 0.4935 | 0.9338 | 0.6867 | 0.093* | |
H8B | 0.5793 | 0.8532 | 0.7355 | 0.093* | |
H8C | 0.6246 | 0.9536 | 0.7578 | 0.093* | |
C9 | −0.0236 (4) | 1.0707 (2) | 0.6250 (3) | 0.0332 (8) | |
C10 | −0.0180 (4) | 1.1618 (2) | 0.5961 (3) | 0.0420 (9) | |
H10 | 0.0571 | 1.1972 | 0.6131 | 0.050* | |
C11 | −0.1303 (5) | 1.1972 (3) | 0.5406 (3) | 0.0502 (11) | |
H11 | −0.1297 | 1.2575 | 0.5187 | 0.060* | |
C12 | −0.2441 (5) | 1.1449 (3) | 0.5168 (3) | 0.0531 (11) | |
H12 | −0.3184 | 1.1720 | 0.4820 | 0.064* | |
C13 | −0.2499 (4) | 1.0548 (3) | 0.5431 (3) | 0.0482 (10) | |
H13 | −0.3255 | 1.0199 | 0.5259 | 0.058* | |
C14 | −0.1372 (4) | 1.0184 (2) | 0.5966 (3) | 0.0364 (9) | |
C15 | 0.0180 (4) | 0.9343 (2) | 0.6856 (3) | 0.0386 (9) | |
C16 | 0.0818 (5) | 0.8531 (2) | 0.7384 (3) | 0.0577 (13) | |
H16A | 0.1749 | 0.8514 | 0.7233 | 0.087* | |
H16B | 0.0384 | 0.7992 | 0.7108 | 0.087* | |
H16C | 0.0733 | 0.8566 | 0.8150 | 0.087* | |
Cd1 | 0.26490 (3) | 1.074421 (18) | 0.75481 (2) | 0.03930 (11) |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.039 (2) | 0.0255 (15) | 0.0436 (18) | 0.0043 (14) | 0.0033 (15) | 0.0002 (14) |
N2 | 0.044 (2) | 0.0340 (18) | 0.066 (2) | 0.0133 (15) | −0.0060 (18) | 0.0078 (17) |
N3 | 0.0365 (18) | 0.0242 (15) | 0.0410 (16) | −0.0068 (13) | 0.0015 (14) | −0.0021 (13) |
N4 | 0.048 (2) | 0.0289 (17) | 0.0482 (19) | −0.0128 (14) | 0.0016 (16) | −0.0055 (14) |
Br1 | 0.0653 (3) | 0.0460 (3) | 0.0713 (3) | −0.0150 (2) | 0.0077 (2) | 0.0149 (2) |
Br2 | 0.0746 (4) | 0.0398 (3) | 0.0745 (3) | 0.0205 (2) | −0.0163 (3) | −0.0179 (2) |
C1 | 0.044 (2) | 0.027 (2) | 0.050 (2) | −0.0007 (17) | −0.010 (2) | 0.0000 (18) |
C2 | 0.066 (3) | 0.039 (2) | 0.053 (3) | −0.008 (2) | −0.017 (2) | 0.006 (2) |
C3 | 0.089 (4) | 0.058 (3) | 0.041 (2) | −0.018 (3) | 0.003 (3) | −0.003 (2) |
C4 | 0.082 (4) | 0.057 (3) | 0.052 (3) | 0.005 (3) | 0.016 (3) | −0.005 (2) |
C5 | 0.058 (3) | 0.049 (3) | 0.053 (3) | 0.016 (2) | 0.002 (2) | −0.003 (2) |
C6 | 0.043 (2) | 0.0256 (19) | 0.041 (2) | −0.0001 (16) | 0.0017 (18) | −0.0006 (16) |
C7 | 0.039 (2) | 0.030 (2) | 0.053 (2) | 0.0008 (17) | 0.0057 (19) | −0.0037 (18) |
C8 | 0.057 (3) | 0.050 (3) | 0.081 (3) | 0.006 (2) | 0.027 (3) | −0.005 (2) |
C9 | 0.037 (2) | 0.030 (2) | 0.0328 (19) | 0.0039 (16) | 0.0046 (16) | −0.0025 (16) |
C10 | 0.046 (3) | 0.033 (2) | 0.048 (2) | −0.0044 (18) | 0.0004 (19) | −0.0034 (18) |
C11 | 0.068 (3) | 0.029 (2) | 0.053 (2) | 0.013 (2) | −0.003 (2) | −0.0004 (19) |
C12 | 0.051 (3) | 0.054 (3) | 0.053 (3) | 0.013 (2) | −0.010 (2) | −0.006 (2) |
C13 | 0.041 (3) | 0.053 (3) | 0.050 (2) | −0.004 (2) | −0.005 (2) | −0.011 (2) |
C14 | 0.041 (2) | 0.035 (2) | 0.0341 (19) | −0.0006 (17) | 0.0046 (17) | −0.0080 (16) |
C15 | 0.051 (3) | 0.028 (2) | 0.038 (2) | −0.0037 (17) | 0.0054 (19) | 0.0007 (16) |
C16 | 0.082 (4) | 0.030 (2) | 0.059 (3) | −0.008 (2) | −0.014 (2) | 0.011 (2) |
Cd1 | 0.04113 (19) | 0.02686 (16) | 0.04918 (18) | 0.00061 (12) | −0.00430 (13) | 0.00266 (12) |
N1—C7 | 1.336 (5) | C4—H4A | 0.9300 |
N1—C6 | 1.390 (5) | C5—C6 | 1.396 (6) |
N1—Cd1 | 2.252 (3) | C5—H5 | 0.9300 |
N2—C7 | 1.345 (5) | C7—C8 | 1.475 (6) |
N2—C1 | 1.370 (5) | C8—H8A | 0.9600 |
N2—H2 | 0.8600 | C8—H8B | 0.9600 |
N3—C15 | 1.334 (4) | C8—H8C | 0.9600 |
N3—C9 | 1.407 (5) | C9—C10 | 1.393 (5) |
N3—Cd1 | 2.250 (3) | C9—C14 | 1.403 (5) |
N4—C15 | 1.347 (5) | C10—C11 | 1.387 (6) |
N4—C14 | 1.392 (5) | C10—H10 | 0.9300 |
N4—H4 | 0.8600 | C11—C12 | 1.394 (6) |
Br1—Cd1 | 2.5372 (15) | C11—H11 | 0.9300 |
Br2—Cd1 | 2.5869 (15) | C12—C13 | 1.370 (6) |
C1—C2 | 1.385 (6) | C12—H12 | 0.9300 |
C1—C6 | 1.398 (5) | C13—C14 | 1.386 (6) |
C2—C3 | 1.381 (7) | C13—H13 | 0.9300 |
C2—H2A | 0.9300 | C15—C16 | 1.492 (5) |
C3—C4 | 1.401 (7) | C16—H16A | 0.9600 |
C3—H3 | 0.9300 | C16—H16B | 0.9600 |
C4—C5 | 1.381 (6) | C16—H16C | 0.9600 |
C7—N1—C6 | 106.1 (3) | C7—C8—H8C | 109.5 |
C7—N1—Cd1 | 130.2 (3) | H8A—C8—H8C | 109.5 |
C6—N1—Cd1 | 123.1 (2) | H8B—C8—H8C | 109.5 |
C7—N2—C1 | 109.0 (3) | C10—C9—C14 | 120.6 (4) |
C7—N2—H2 | 125.5 | C10—C9—N3 | 129.7 (4) |
C1—N2—H2 | 125.5 | C14—C9—N3 | 109.7 (3) |
C15—N3—C9 | 105.3 (3) | C11—C10—C9 | 116.6 (4) |
C15—N3—Cd1 | 132.3 (3) | C11—C10—H10 | 121.7 |
C9—N3—Cd1 | 122.3 (2) | C9—C10—H10 | 121.7 |
C15—N4—C14 | 109.1 (3) | C10—C11—C12 | 121.9 (4) |
C15—N4—H4 | 125.4 | C10—C11—H11 | 119.1 |
C14—N4—H4 | 125.4 | C12—C11—H11 | 119.1 |
N2—C1—C2 | 132.2 (4) | C13—C12—C11 | 122.1 (4) |
N2—C1—C6 | 105.3 (3) | C13—C12—H12 | 119.0 |
C2—C1—C6 | 122.5 (4) | C11—C12—H12 | 119.0 |
C3—C2—C1 | 116.3 (4) | C12—C13—C14 | 116.5 (4) |
C3—C2—H2A | 121.8 | C12—C13—H13 | 121.8 |
C1—C2—H2A | 121.8 | C14—C13—H13 | 121.8 |
C2—C3—C4 | 122.2 (4) | C13—C14—N4 | 133.4 (4) |
C2—C3—H3 | 118.9 | C13—C14—C9 | 122.3 (4) |
C4—C3—H3 | 118.9 | N4—C14—C9 | 104.2 (3) |
C5—C4—C3 | 121.0 (5) | N3—C15—N4 | 111.7 (3) |
C5—C4—H4A | 119.5 | N3—C15—C16 | 125.5 (4) |
C3—C4—H4A | 119.5 | N4—C15—C16 | 122.8 (3) |
C4—C5—C6 | 117.5 (4) | C15—C16—H16A | 109.5 |
C4—C5—H5 | 121.2 | C15—C16—H16B | 109.5 |
C6—C5—H5 | 121.2 | H16A—C16—H16B | 109.5 |
N1—C6—C5 | 130.8 (4) | C15—C16—H16C | 109.5 |
N1—C6—C1 | 108.8 (3) | H16A—C16—H16C | 109.5 |
C5—C6—C1 | 120.4 (4) | H16B—C16—H16C | 109.5 |
N1—C7—N2 | 110.8 (3) | N3—Cd1—N1 | 106.04 (12) |
N1—C7—C8 | 125.9 (4) | N3—Cd1—Br1 | 109.95 (9) |
N2—C7—C8 | 123.3 (4) | N1—Cd1—Br1 | 117.77 (9) |
C7—C8—H8A | 109.5 | N3—Cd1—Br2 | 107.95 (9) |
C7—C8—H8B | 109.5 | N1—Cd1—Br2 | 105.40 (9) |
H8A—C8—H8B | 109.5 | Br1—Cd1—Br2 | 109.28 (2) |
C7—N2—C1—C2 | 178.9 (4) | C9—C10—C11—C12 | 1.2 (6) |
C7—N2—C1—C6 | 0.1 (4) | C10—C11—C12—C13 | −2.5 (7) |
N2—C1—C2—C3 | −177.2 (4) | C11—C12—C13—C14 | 1.1 (6) |
C6—C1—C2—C3 | 1.3 (6) | C12—C13—C14—N4 | −179.9 (4) |
C1—C2—C3—C4 | 0.1 (7) | C12—C13—C14—C9 | 1.4 (6) |
C2—C3—C4—C5 | −1.5 (7) | C15—N4—C14—C13 | −177.7 (4) |
C3—C4—C5—C6 | 1.5 (7) | C15—N4—C14—C9 | 1.2 (4) |
C7—N1—C6—C5 | −177.1 (4) | C10—C9—C14—C13 | −2.7 (6) |
Cd1—N1—C6—C5 | 11.3 (6) | N3—C9—C14—C13 | 177.7 (3) |
C7—N1—C6—C1 | 0.9 (4) | C10—C9—C14—N4 | 178.3 (3) |
Cd1—N1—C6—C1 | −170.7 (2) | N3—C9—C14—N4 | −1.4 (4) |
C4—C5—C6—N1 | 177.6 (4) | C9—N3—C15—N4 | −0.2 (4) |
C4—C5—C6—C1 | −0.2 (6) | Cd1—N3—C15—N4 | 175.6 (2) |
N2—C1—C6—N1 | −0.6 (4) | C9—N3—C15—C16 | −179.7 (4) |
C2—C1—C6—N1 | −179.5 (3) | Cd1—N3—C15—C16 | −3.9 (6) |
N2—C1—C6—C5 | 177.6 (4) | C14—N4—C15—N3 | −0.6 (4) |
C2—C1—C6—C5 | −1.3 (6) | C14—N4—C15—C16 | 178.9 (4) |
C6—N1—C7—N2 | −0.9 (4) | C15—N3—Cd1—N1 | −4.6 (3) |
Cd1—N1—C7—N2 | 169.9 (2) | C9—N3—Cd1—N1 | 170.6 (2) |
C6—N1—C7—C8 | 177.7 (4) | C15—N3—Cd1—Br1 | 123.7 (3) |
Cd1—N1—C7—C8 | −11.5 (6) | C9—N3—Cd1—Br1 | −61.0 (3) |
C1—N2—C7—N1 | 0.5 (4) | C15—N3—Cd1—Br2 | −117.1 (3) |
C1—N2—C7—C8 | −178.1 (4) | C9—N3—Cd1—Br2 | 58.1 (3) |
C15—N3—C9—C10 | −178.6 (4) | C7—N1—Cd1—N3 | 112.4 (3) |
Cd1—N3—C9—C10 | 5.1 (5) | C6—N1—Cd1—N3 | −78.2 (3) |
C15—N3—C9—C14 | 1.0 (4) | C7—N1—Cd1—Br1 | −11.1 (4) |
Cd1—N3—C9—C14 | −175.3 (2) | C6—N1—Cd1—Br1 | 158.3 (2) |
C14—C9—C10—C11 | 1.3 (5) | C7—N1—Cd1—Br2 | −133.3 (3) |
N3—C9—C10—C11 | −179.1 (3) | C6—N1—Cd1—Br2 | 36.2 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···Br1i | 0.86 | 2.88 | 3.495 (4) | 130 |
N4—H4···Br2ii | 0.86 | 2.77 | 3.563 (4) | 155 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x, y−1/2, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···Br1i | 0.86 | 2.88 | 3.495 (4) | 130 |
N4—H4···Br2ii | 0.86 | 2.77 | 3.563 (4) | 155 |
Symmetry codes: (i) −x+1, y−1/2, −z+3/2; (ii) −x, y−1/2, −z+3/2. |
Acknowledgements
This work was supported by the NSF of Shandong Province (No. 2009ZRA02071), the Scientific Development Plan of Universities in Shandong Province (No. J09LB53) and the Doctoral Science Foundation of QUST.
References
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Benzimidazole and its derivatives have attracted interest because their biological activities as well as their abilities to bind different metal ions (Roderick et al., 1972). In this paper, we describe the synthesis and structure of dibromo-bis(2-methylbenzimidazole)-cadmium(II).
In the title compound, C16H16CdBr2N4, the cadmium atom has a distorted tetrahedral coordination formed by the two imino-nitrogen atoms of two 2-methyl-benzimidazole ligands and two terminal bromide ligands (Figure 1). The similar geometry was previously found in the related compounds – Cd(Cl)2(N-(5,6-dihydro-4H- 1,3-thiazin-2-yl)-2-aminobenzimidazole)2 (Barros-García et al., 2005), Cd(Cl)2(2-(2-furyl)-1-(2-furylmethyl)-1H-benzimidazole)2 (Wang et al., 2010), and Cd(I)2(2-(2-furyl)-1-(2-furylmethyl)- 1H-enzimidazole)2 (Yang et al., 2011). The cadmium atom is slightly out of the two benzimidazole planes by 0.320 (3) and 0.210 (3) Å, respectively. The dihedral angle between the two benzimidazole planes is 71.6 (2)°. The mean values of Cd—Br and Cd—N bond lengths are 2.562 (2) and 2.251 (3) Å, respectively. The N—Cd—Br bond angles range from 105.40 (10) to 117.76 (9)°.
In the crystal, the molecules of the title compound are linked by intermolecular N2—H2···Br1i and N4—H4···Br2ii hydrogen bonds (Table 1) into puckered layers parallel to (001) (Figure 2). Symmetry codes: (i) –x+1, y–1/2, –z+3/2; (ii) –x, y–1/2, –z+3/2.