metal-organic compounds
Tricarbonylchlorido(6′,7′-dihydro-5′H-spiro[cyclohexane-1,6′-dipyrido[3,2-d:2′,3′-f][1,3]diazepine]-κ2N1,N11)rhenium(I)
aDepartment of Chemical & Biological Sciences, University of Huddersfield, Queensgate, Huddersfield HD1 3DH, England
*Correspondence e-mail: l.p.harding@hud.ac.uk
In the title compound, [ReCl(C16H18N4)(CO)3], the ReI ion is coordinated in a distorted octahedral geometry by one Cl atom, two N atoms of the bidentate ligand and three carbonyl groups. The cyclohexane group is orientated in a transoid fashion with respect to the chloride ligand. In the crystal, N—H⋯Cl hydrogen bonds link complex molecules, forming a two-dimensional network parallel to (100).
Related literature
For a review of the photophysical properties of Re–polypyridyl complexes, see: Coleman et al. (2008). For the synthesis of [Re(3,3′-diamino-2,2′-bipyridine)(CO)3Cl] and for the preparation of oxo-steroid derivatives of [Re(3,3′-diamino-2,2′-bipyridine)(CO)3Cl], see: Bullock et al. (2012). For the reaction of [Re(3,3′-diamino-2,2′-bipyridine)(CO)3Cl] with see: Clayton et al. (2008). For the structure of the cyclopentane analogue of the title compound, see: Clegg et al. (2013).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.
Supporting information
10.1107/S1600536813024288/lh5645sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813024288/lh5645Isup2.hkl
To a solution of [Re(3,3'-diamino-2,2'-bipyridine)(CO)3Cl] in dichloromethane was added cyclohexanone (10 µL, ca. 2 eq.) and a few grains of camphorsulfonic acid. The solution was stirred at room temperature for 2 h. The resulting precipitate was filtered in vacuo, washed with dichloromethane and dried, giving the product as a yellow solid. Crystals suitable for X-ray analysis were prepared by slow evaporation of an acetonitrile solution of the complex.
All non-hydrogen atoms were refined anisotropically. Hydrogen atoms on sp2 and sp3 C atoms were placed in calculated positions and refined with riding constraints and isotropic displacement parameters 1.2 × their parent carbon atoms. H atoms bonded to N atoms were refined independently with a bond length constraint of 0.91 (2)Å and Uiso(H) = 1.2Ueq(N).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. The molecular structure of the title compound with displacement ellipsoids shown at the 50% probability level. |
[ReCl(C16H18N4)(CO)3] | F(000) = 1104 |
Mr = 572.02 | Dx = 1.986 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 6672 reflections |
a = 12.6794 (6) Å | θ = 2.4–30.2° |
b = 11.9040 (6) Å | µ = 6.52 mm−1 |
c = 12.7732 (6) Å | T = 150 K |
β = 97.066 (1)° | Block, yellow |
V = 1913.29 (16) Å3 | 0.10 × 0.10 × 0.03 mm |
Z = 4 |
Bruker APEXII CCD diffractometer | 5590 independent reflections |
Radiation source: fine-focus sealed tube | 4543 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
ϕ and ω scans | θmax = 30.0°, θmin = 2.4° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −17→17 |
Tmin = 0.562, Tmax = 0.828 | k = −16→16 |
22579 measured reflections | l = −17→17 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0164P)2 + 1.9168P] where P = (Fo2 + 2Fc2)/3 |
5590 reflections | (Δ/σ)max = 0.002 |
259 parameters | Δρmax = 1.08 e Å−3 |
2 restraints | Δρmin = −0.74 e Å−3 |
[ReCl(C16H18N4)(CO)3] | V = 1913.29 (16) Å3 |
Mr = 572.02 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.6794 (6) Å | µ = 6.52 mm−1 |
b = 11.9040 (6) Å | T = 150 K |
c = 12.7732 (6) Å | 0.10 × 0.10 × 0.03 mm |
β = 97.066 (1)° |
Bruker APEXII CCD diffractometer | 5590 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4543 reflections with I > 2σ(I) |
Tmin = 0.562, Tmax = 0.828 | Rint = 0.039 |
22579 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 2 restraints |
wR(F2) = 0.051 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 1.08 e Å−3 |
5590 reflections | Δρmin = −0.74 e Å−3 |
259 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Re1 | 0.209524 (11) | 0.453951 (10) | 0.250974 (9) | 0.01842 (4) | |
Cl1 | 0.33970 (7) | 0.60427 (7) | 0.21693 (7) | 0.02644 (18) | |
N1 | 0.3302 (2) | 0.4016 (2) | 0.37600 (19) | 0.0185 (5) | |
N2 | 0.1863 (2) | 0.5567 (2) | 0.38525 (19) | 0.0199 (5) | |
N3 | 0.3158 (2) | 0.6174 (2) | 0.6529 (2) | 0.0215 (6) | |
N4 | 0.4188 (2) | 0.4503 (3) | 0.6590 (2) | 0.0310 (7) | |
O1 | 0.0385 (2) | 0.5624 (2) | 0.09147 (18) | 0.0306 (6) | |
O2 | 0.2669 (3) | 0.3038 (2) | 0.0706 (2) | 0.0477 (8) | |
O3 | 0.0489 (2) | 0.2781 (2) | 0.3017 (2) | 0.0387 (7) | |
C1 | 0.1030 (3) | 0.5197 (3) | 0.1503 (2) | 0.0226 (7) | |
C2 | 0.2461 (3) | 0.3609 (3) | 0.1381 (3) | 0.0286 (8) | |
C3 | 0.1102 (3) | 0.3443 (3) | 0.2834 (2) | 0.0255 (7) | |
C4 | 0.3337 (2) | 0.4527 (3) | 0.4731 (2) | 0.0189 (6) | |
C5 | 0.4093 (3) | 0.4144 (3) | 0.5566 (2) | 0.0209 (7) | |
C6 | 0.4833 (3) | 0.3319 (3) | 0.5338 (3) | 0.0227 (7) | |
H6 | 0.5368 | 0.3080 | 0.5878 | 0.027* | |
C7 | 0.4792 (3) | 0.2859 (3) | 0.4357 (3) | 0.0255 (7) | |
H7 | 0.5293 | 0.2307 | 0.4206 | 0.031* | |
C8 | 0.4001 (3) | 0.3219 (3) | 0.3585 (3) | 0.0229 (7) | |
H8 | 0.3954 | 0.2887 | 0.2905 | 0.027* | |
C9 | 0.2552 (2) | 0.5444 (3) | 0.4760 (2) | 0.0175 (6) | |
C10 | 0.2467 (3) | 0.6191 (3) | 0.5607 (2) | 0.0195 (6) | |
C11 | 0.1681 (3) | 0.7017 (3) | 0.5486 (3) | 0.0268 (8) | |
H11 | 0.1617 | 0.7523 | 0.6050 | 0.032* | |
C12 | 0.1001 (3) | 0.7113 (3) | 0.4572 (3) | 0.0309 (8) | |
H12 | 0.0465 | 0.7675 | 0.4495 | 0.037* | |
C13 | 0.1117 (3) | 0.6367 (3) | 0.3764 (3) | 0.0273 (8) | |
H13 | 0.0651 | 0.6425 | 0.3125 | 0.033* | |
C14 | 0.3416 (3) | 0.5122 (3) | 0.7096 (2) | 0.0234 (7) | |
C15 | 0.2419 (3) | 0.4398 (3) | 0.7144 (3) | 0.0296 (8) | |
H15A | 0.2073 | 0.4253 | 0.6419 | 0.036* | |
H15B | 0.2628 | 0.3665 | 0.7474 | 0.036* | |
C16 | 0.1653 (4) | 0.4967 (4) | 0.7762 (3) | 0.0432 (10) | |
H16A | 0.1025 | 0.4480 | 0.7792 | 0.052* | |
H16B | 0.1411 | 0.5678 | 0.7410 | 0.052* | |
C17 | 0.2176 (4) | 0.5216 (4) | 0.8886 (3) | 0.0514 (13) | |
H17A | 0.1662 | 0.5610 | 0.9281 | 0.062* | |
H17B | 0.2374 | 0.4500 | 0.9254 | 0.062* | |
C18 | 0.3166 (4) | 0.5941 (4) | 0.8870 (3) | 0.0401 (10) | |
H18A | 0.2956 | 0.6691 | 0.8580 | 0.048* | |
H18B | 0.3516 | 0.6044 | 0.9600 | 0.048* | |
C19 | 0.3935 (3) | 0.5414 (3) | 0.8214 (3) | 0.0335 (8) | |
H19A | 0.4228 | 0.4720 | 0.8567 | 0.040* | |
H19B | 0.4534 | 0.5937 | 0.8165 | 0.040* | |
H3 | 0.305 (3) | 0.678 (2) | 0.691 (3) | 0.040* | |
H4 | 0.479 (2) | 0.433 (3) | 0.699 (3) | 0.040* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Re1 | 0.01938 (6) | 0.01328 (6) | 0.02209 (6) | 0.00027 (6) | 0.00050 (4) | −0.00139 (5) |
Cl1 | 0.0213 (4) | 0.0212 (4) | 0.0355 (4) | −0.0005 (3) | −0.0016 (3) | 0.0099 (3) |
N1 | 0.0202 (14) | 0.0109 (13) | 0.0243 (12) | −0.0002 (11) | 0.0020 (11) | 0.0016 (10) |
N2 | 0.0188 (13) | 0.0153 (13) | 0.0243 (12) | 0.0019 (12) | −0.0032 (10) | −0.0022 (10) |
N3 | 0.0240 (15) | 0.0139 (14) | 0.0251 (13) | −0.0009 (12) | −0.0037 (12) | −0.0009 (10) |
N4 | 0.0241 (16) | 0.0336 (17) | 0.0322 (14) | 0.0131 (15) | −0.0091 (12) | −0.0073 (14) |
O1 | 0.0313 (14) | 0.0297 (14) | 0.0285 (12) | 0.0044 (12) | −0.0052 (11) | −0.0035 (10) |
O2 | 0.073 (2) | 0.0393 (17) | 0.0327 (14) | 0.0243 (16) | 0.0140 (15) | −0.0042 (12) |
O3 | 0.0384 (17) | 0.0295 (15) | 0.0479 (15) | −0.0119 (13) | 0.0033 (13) | −0.0002 (12) |
C1 | 0.0260 (18) | 0.0169 (17) | 0.0252 (15) | −0.0050 (14) | 0.0042 (14) | −0.0069 (12) |
C2 | 0.035 (2) | 0.0219 (18) | 0.0287 (16) | 0.0060 (17) | 0.0044 (15) | 0.0051 (14) |
C3 | 0.029 (2) | 0.0202 (18) | 0.0258 (15) | 0.0002 (15) | −0.0018 (14) | −0.0042 (13) |
C4 | 0.0164 (14) | 0.0124 (14) | 0.0272 (14) | −0.0039 (14) | −0.0005 (12) | −0.0013 (12) |
C5 | 0.0183 (16) | 0.0157 (15) | 0.0281 (15) | −0.0021 (13) | 0.0002 (13) | −0.0006 (12) |
C6 | 0.0153 (16) | 0.0156 (16) | 0.0362 (17) | 0.0022 (13) | −0.0008 (14) | 0.0016 (12) |
C7 | 0.0216 (18) | 0.0154 (16) | 0.0402 (18) | 0.0034 (14) | 0.0072 (15) | 0.0018 (13) |
C8 | 0.0234 (18) | 0.0146 (16) | 0.0308 (16) | 0.0033 (14) | 0.0045 (14) | −0.0009 (12) |
C9 | 0.0186 (15) | 0.0122 (14) | 0.0209 (12) | −0.0008 (14) | −0.0013 (11) | 0.0017 (12) |
C10 | 0.0196 (16) | 0.0116 (15) | 0.0262 (14) | −0.0005 (13) | −0.0024 (13) | 0.0003 (11) |
C11 | 0.029 (2) | 0.0181 (17) | 0.0319 (16) | 0.0064 (15) | −0.0016 (15) | −0.0077 (13) |
C12 | 0.033 (2) | 0.0236 (19) | 0.0348 (18) | 0.0124 (17) | −0.0033 (16) | −0.0046 (14) |
C13 | 0.0263 (19) | 0.0232 (18) | 0.0300 (16) | 0.0091 (16) | −0.0061 (14) | −0.0033 (14) |
C14 | 0.0254 (18) | 0.0201 (17) | 0.0227 (14) | 0.0045 (14) | −0.0052 (13) | −0.0018 (12) |
C15 | 0.040 (2) | 0.0168 (18) | 0.0308 (16) | −0.0015 (16) | −0.0001 (16) | 0.0025 (13) |
C16 | 0.043 (3) | 0.039 (2) | 0.049 (2) | −0.009 (2) | 0.012 (2) | −0.0029 (19) |
C17 | 0.071 (4) | 0.045 (3) | 0.042 (2) | −0.001 (2) | 0.022 (2) | −0.0035 (19) |
C18 | 0.048 (3) | 0.040 (2) | 0.0311 (19) | −0.001 (2) | −0.0006 (18) | −0.0039 (16) |
C19 | 0.037 (2) | 0.033 (2) | 0.0267 (15) | 0.0077 (19) | −0.0094 (15) | −0.0033 (15) |
Re1—C3 | 1.895 (4) | C7—H7 | 0.9500 |
Re1—C1 | 1.914 (3) | C8—H8 | 0.9500 |
Re1—C2 | 1.919 (4) | C9—C10 | 1.414 (4) |
Re1—N2 | 2.156 (3) | C10—C11 | 1.395 (5) |
Re1—N1 | 2.163 (3) | C11—C12 | 1.368 (5) |
Re1—Cl1 | 2.5083 (9) | C11—H11 | 0.9500 |
N1—C8 | 1.335 (4) | C12—C13 | 1.383 (5) |
N1—C4 | 1.377 (4) | C12—H12 | 0.9500 |
N2—C13 | 1.338 (4) | C13—H13 | 0.9500 |
N2—C9 | 1.370 (4) | C14—C19 | 1.537 (4) |
N3—C10 | 1.378 (4) | C14—C15 | 1.538 (5) |
N3—C14 | 1.464 (4) | C15—C16 | 1.488 (6) |
N3—H3 | 0.895 (18) | C15—H15A | 0.9900 |
N4—C5 | 1.367 (4) | C15—H15B | 0.9900 |
N4—C14 | 1.440 (5) | C16—C17 | 1.534 (6) |
N4—H4 | 0.895 (19) | C16—H16A | 0.9900 |
O1—C1 | 1.158 (4) | C16—H16B | 0.9900 |
O2—C2 | 1.154 (4) | C17—C18 | 1.526 (6) |
O3—C3 | 1.151 (4) | C17—H17A | 0.9900 |
C4—C5 | 1.418 (4) | C17—H17B | 0.9900 |
C4—C9 | 1.482 (4) | C18—C19 | 1.500 (5) |
C5—C6 | 1.413 (5) | C18—H18A | 0.9900 |
C6—C7 | 1.362 (5) | C18—H18B | 0.9900 |
C6—H6 | 0.9500 | C19—H19A | 0.9900 |
C7—C8 | 1.386 (5) | C19—H19B | 0.9900 |
C3—Re1—C1 | 89.74 (14) | N3—C10—C11 | 118.4 (3) |
C3—Re1—C2 | 89.72 (15) | N3—C10—C9 | 122.9 (3) |
C1—Re1—C2 | 86.96 (14) | C11—C10—C9 | 118.6 (3) |
C3—Re1—N2 | 93.30 (12) | C12—C11—C10 | 121.3 (3) |
C1—Re1—N2 | 98.55 (11) | C12—C11—H11 | 119.4 |
C2—Re1—N2 | 173.72 (13) | C10—C11—H11 | 119.4 |
C3—Re1—N1 | 93.94 (12) | C11—C12—C13 | 118.0 (3) |
C1—Re1—N1 | 172.11 (11) | C11—C12—H12 | 121.0 |
C2—Re1—N1 | 100.02 (13) | C13—C12—H12 | 121.0 |
N2—Re1—N1 | 74.30 (10) | N2—C13—C12 | 122.2 (3) |
C3—Re1—Cl1 | 176.99 (10) | N2—C13—H13 | 118.9 |
C1—Re1—Cl1 | 90.96 (10) | C12—C13—H13 | 118.9 |
C2—Re1—Cl1 | 93.23 (12) | N4—C14—N3 | 109.8 (3) |
N2—Re1—Cl1 | 83.70 (8) | N4—C14—C19 | 107.2 (3) |
N1—Re1—Cl1 | 85.01 (7) | N3—C14—C19 | 108.1 (3) |
C8—N1—C4 | 121.0 (3) | N4—C14—C15 | 109.8 (3) |
C8—N1—Re1 | 120.3 (2) | N3—C14—C15 | 111.4 (3) |
C4—N1—Re1 | 118.6 (2) | C19—C14—C15 | 110.5 (3) |
C13—N2—C9 | 121.2 (3) | C16—C15—C14 | 111.1 (3) |
C13—N2—Re1 | 120.1 (2) | C16—C15—H15A | 109.4 |
C9—N2—Re1 | 118.5 (2) | C14—C15—H15A | 109.4 |
C10—N3—C14 | 121.0 (3) | C16—C15—H15B | 109.4 |
C10—N3—H3 | 110 (3) | C14—C15—H15B | 109.4 |
C14—N3—H3 | 117 (3) | H15A—C15—H15B | 108.0 |
C5—N4—C14 | 127.2 (3) | C15—C16—C17 | 110.5 (4) |
C5—N4—H4 | 116 (3) | C15—C16—H16A | 109.6 |
C14—N4—H4 | 116 (3) | C17—C16—H16A | 109.6 |
O1—C1—Re1 | 177.8 (3) | C15—C16—H16B | 109.6 |
O2—C2—Re1 | 178.9 (4) | C17—C16—H16B | 109.6 |
O3—C3—Re1 | 179.0 (3) | H16A—C16—H16B | 108.1 |
N1—C4—C5 | 118.6 (3) | C18—C17—C16 | 111.0 (3) |
N1—C4—C9 | 113.6 (3) | C18—C17—H17A | 109.4 |
C5—C4—C9 | 127.8 (3) | C16—C17—H17A | 109.4 |
N4—C5—C6 | 115.6 (3) | C18—C17—H17B | 109.4 |
N4—C5—C4 | 126.2 (3) | C16—C17—H17B | 109.4 |
C6—C5—C4 | 118.2 (3) | H17A—C17—H17B | 108.0 |
C7—C6—C5 | 121.2 (3) | C19—C18—C17 | 111.3 (3) |
C7—C6—H6 | 119.4 | C19—C18—H18A | 109.4 |
C5—C6—H6 | 119.4 | C17—C18—H18A | 109.4 |
C6—C7—C8 | 118.2 (3) | C19—C18—H18B | 109.4 |
C6—C7—H7 | 120.9 | C17—C18—H18B | 109.4 |
C8—C7—H7 | 120.9 | H18A—C18—H18B | 108.0 |
N1—C8—C7 | 122.5 (3) | C18—C19—C14 | 112.4 (3) |
N1—C8—H8 | 118.7 | C18—C19—H19A | 109.1 |
C7—C8—H8 | 118.7 | C14—C19—H19A | 109.1 |
N2—C9—C10 | 118.7 (3) | C18—C19—H19B | 109.1 |
N2—C9—C4 | 114.7 (3) | C14—C19—H19B | 109.1 |
C10—C9—C4 | 126.6 (3) | H19A—C19—H19B | 107.9 |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···Cl1i | 0.89 (3) | 2.64 (2) | 3.417 (3) | 146 (3) |
N4—H4···Cl1ii | 0.89 (3) | 2.46 (3) | 3.334 (3) | 171 (3) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···Cl1i | 0.89 (3) | 2.64 (2) | 3.417 (3) | 146 (3) |
N4—H4···Cl1ii | 0.89 (3) | 2.46 (3) | 3.334 (3) | 171 (3) |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) −x+1, −y+1, −z+1. |
Acknowledgements
The authors wish to thank the University of Huddersfield for financial support.
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The title complex was prepared as part of a larger study into conjugation of [Re(3,3'-diamino-2,2'-bipyridine)(CO)3Cl] with oxo-steroids to form luminescent derivatives (Bullock et al. 2012). These steroids contain a cyclohexyl ring (ring A) with a ketone group in the 3-position; therefore, cyclohexanone was used as a model compound to examine the potential reactivity of such steroids with the rhenium complex.
Single-crystal X-ray analysis of the title complex gave the structure shown in Fig. 1. The rhenium centre adopts a distorted octahedral geometry which is coordinated by two nitrogen atoms from a 3,3'-diamino-2,2'-bipyridyl ligand and two carbonyl ligands in the equatorial sites and by a carbonyl ligand and a chloride ion in the axial sites. The cyclohexyl ring adopts a chair conformation and is orientated in a trans-oid fashion relative to the chloride ion on the rhenium centre. In the crystal, N—H···Cl hydrogen bonds (Table 1 & Fig. 2) link complex molecules to form a two-dimensional network parallel (100).
A similar compound has been prepared using cyclopentanone instead of cyclohexanone. The title compound compound is essentially isostructural with that compound (Clegg et al. 2013).