organic compounds
4-Hydroxy-5-(2-methoxyphenoxy)-2,2′-bipyrimidin-6(5H)-one dihydrate
aDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, and bDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA
*Correspondence e-mail: jjasinski@keene.edu
The title compound, C15H12N4O4·2H2O, crystallizes with two independent water molecules in the The dihedral angles between the mean planes of the benzene and pyrimidine rings and that of the pyrimidin-4-one ring are 85.1 (9) and 82.1 (1)°, respectively. The mean plane of the pyrimidine ring is twisted by 12.8 (8)° from that of the pyrimidin-4-one ring. The dihedral angles between the benzene ring and the mean planes of the pyrimidine and pyrimidin-4-one rings are 85.1 (9) and 82.1 (1)°, respectively.In the crystal, N–H⋯O, O—H⋯N and O—H⋯O hydrogen bonds involving both water molecules are present; these link the molecules into a two-dimensional network parallel to (010). In addition, weak C—H⋯π and π–π [centroid–centroid distance = 3.6183 (8) Å] interactions occur.
CCDC reference: 967630
Related literature
For substituted pyrimidine-2,4-diones as good reversible inhibitors of thymidine phosphorylase, see: Baker & Rzeszotarki (1967). For the use of 2,2′-bipyrimidine as a ligand in inorganic and organometallic chemistry, see: Hunziker & Ludi (1977); Fabrice et al. (2008). For related structures, see: El-Brollosy et al. (2012); Fun et al. (2009); Kaur et al. (2013); Ren et al. (2011); Trilleras et al. (2009).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Agilent, 2012); cell CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.
Supporting information
CCDC reference: 967630
10.1107/S1600536813028900/bt6940sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813028900/bt6940Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813028900/bt6940Isup3.cml
The title compound was obtained as a gift sample from Cadila Pharmaceuticals, Ahmedabad. The title compound (0.5 g) was dissolved in 10 ml of a mixture of dimethylsulphoxide and dimethylformamide (1:1) and stirred for 30 minutes on magnetic stirrer at 308 K. X-ray quality crystals of the title compound were formed after few days (m. p.: 536–540 K).
H3, H4, H1WA, H1WB, H2WA and H2WB were located by a difference map and refined isotropically. All of the remaining H atoms were placed in their calculated positions and then refined using the riding model with Atom—H lengths of 0.95Å (CH) or 0.98Å (CH3). Isotropic displacement parameters for these atoms were set to 1.2 (CH) or 1.5 (CH3) times Ueq of the parent atom. The methyl group was refined as a rotating group.
Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. ORTEP drawing of (I) (C15H12N4O4. 2 H2O) showing the labeling scheme with 30% probability displacement ellipsoids. | |
Fig. 2. Molecular packing for (I) viewed along the C axis. Dashed lines indicate O—H···N and O—H···O hydrogen bonds involving both water molecules and N—H···O hydrogen bonds between the molecules. All of these interactions directly link the molecules into a 2D network along (0 1 0). H atoms not involved in hydrogen bonding have been removed for clarity. |
C15H12N4O4·2H2O | F(000) = 728 |
Mr = 348.32 | Dx = 1.475 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54184 Å |
a = 9.5817 (3) Å | Cell parameters from 4761 reflections |
b = 13.9439 (3) Å | θ = 3.2–72.3° |
c = 12.4804 (4) Å | µ = 0.99 mm−1 |
β = 109.832 (3)° | T = 173 K |
V = 1568.55 (8) Å3 | Irregular, colourless |
Z = 4 | 0.45 × 0.32 × 0.24 mm |
Agilent Xcalibur (Eos, Gemini) diffractometer | 3070 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 2789 reflections with I > 2σ(I) |
Detector resolution: 16.0416 pixels mm-1 | Rint = 0.040 |
ω scans | θmax = 72.5°, θmin = 4.9° |
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012) | h = −11→11 |
Tmin = 0.876, Tmax = 1.000 | k = −17→13 |
9840 measured reflections | l = −15→14 |
Refinement on F2 | Hydrogen site location: mixed |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.041 | w = 1/[σ2(Fo2) + (0.0697P)2 + 0.4106P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.115 | (Δ/σ)max < 0.001 |
S = 1.03 | Δρmax = 0.31 e Å−3 |
3070 reflections | Δρmin = −0.26 e Å−3 |
252 parameters | Extinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 restraints | Extinction coefficient: 0.0118 (8) |
Primary atom site location: structure-invariant direct methods |
C15H12N4O4·2H2O | V = 1568.55 (8) Å3 |
Mr = 348.32 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 9.5817 (3) Å | µ = 0.99 mm−1 |
b = 13.9439 (3) Å | T = 173 K |
c = 12.4804 (4) Å | 0.45 × 0.32 × 0.24 mm |
β = 109.832 (3)° |
Agilent Xcalibur (Eos, Gemini) diffractometer | 3070 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012) | 2789 reflections with I > 2σ(I) |
Tmin = 0.876, Tmax = 1.000 | Rint = 0.040 |
9840 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.115 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.31 e Å−3 |
3070 reflections | Δρmin = −0.26 e Å−3 |
252 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.66810 (10) | 0.07758 (7) | 0.72585 (8) | 0.0234 (2) | |
O2 | 0.83857 (10) | 0.17796 (7) | 0.64227 (8) | 0.0218 (2) | |
O3 | 1.14014 (11) | 0.20971 (7) | 0.71581 (8) | 0.0261 (3) | |
H3 | 1.235 (3) | 0.2265 (17) | 0.727 (2) | 0.059 (7)* | |
O4 | 0.67224 (10) | 0.27899 (8) | 0.44713 (8) | 0.0284 (3) | |
N1 | 0.99634 (13) | 0.47988 (8) | 0.33822 (10) | 0.0233 (3) | |
N2 | 1.24321 (12) | 0.42848 (8) | 0.43964 (10) | 0.0228 (3) | |
N3 | 1.12057 (12) | 0.31273 (8) | 0.56724 (9) | 0.0199 (3) | |
N4 | 0.88527 (12) | 0.34237 (8) | 0.43264 (10) | 0.0214 (3) | |
C1 | 1.09611 (14) | 0.42507 (9) | 0.41329 (11) | 0.0195 (3) | |
C2 | 1.29246 (15) | 0.49577 (11) | 0.38523 (12) | 0.0268 (3) | |
H2 | 1.3965 | 0.5022 | 0.4023 | 0.032* | |
C3 | 1.19918 (17) | 0.55649 (10) | 0.30517 (12) | 0.0284 (3) | |
H3A | 1.2366 | 0.6040 | 0.2675 | 0.034* | |
C4 | 1.04900 (16) | 0.54475 (10) | 0.28272 (12) | 0.0261 (3) | |
H4A | 0.9812 | 0.5838 | 0.2264 | 0.031* | |
C5 | 1.03430 (14) | 0.35477 (9) | 0.47561 (11) | 0.0189 (3) | |
C6 | 0.80944 (14) | 0.28493 (9) | 0.48529 (11) | 0.0205 (3) | |
C7 | 0.90348 (14) | 0.23650 (9) | 0.58376 (11) | 0.0196 (3) | |
C8 | 1.05471 (14) | 0.25246 (9) | 0.62200 (11) | 0.0198 (3) | |
C9 | 0.79005 (14) | 0.08924 (9) | 0.59160 (11) | 0.0202 (3) | |
C10 | 0.82984 (16) | 0.05252 (10) | 0.50337 (12) | 0.0255 (3) | |
H10 | 0.8894 | 0.0895 | 0.4715 | 0.031* | |
C11 | 0.78253 (18) | −0.03891 (11) | 0.46092 (13) | 0.0314 (3) | |
H11 | 0.8091 | −0.0640 | 0.3997 | 0.038* | |
C12 | 0.69761 (19) | −0.09249 (11) | 0.50761 (14) | 0.0341 (4) | |
H12 | 0.6664 | −0.1550 | 0.4792 | 0.041* | |
C13 | 0.65690 (17) | −0.05569 (11) | 0.59662 (13) | 0.0294 (3) | |
H13 | 0.5980 | −0.0931 | 0.6285 | 0.035* | |
C14 | 0.70226 (14) | 0.03557 (10) | 0.63884 (11) | 0.0211 (3) | |
C15 | 0.59236 (18) | 0.01817 (12) | 0.78172 (13) | 0.0329 (4) | |
H15A | 0.5822 | 0.0526 | 0.8472 | 0.049* | |
H15B | 0.6492 | −0.0409 | 0.8080 | 0.049* | |
H15C | 0.4937 | 0.0021 | 0.7283 | 0.049* | |
O1W | 0.50931 (13) | 0.68034 (8) | 0.41460 (10) | 0.0335 (3) | |
O2W | 0.41708 (12) | 0.25759 (10) | 0.25780 (10) | 0.0385 (3) | |
H2WA | 0.493 (3) | 0.2699 (16) | 0.316 (2) | 0.049 (6)* | |
H2WB | 0.445 (3) | 0.2361 (16) | 0.199 (2) | 0.055 (6)* | |
H4 | 0.836 (2) | 0.3704 (14) | 0.3675 (18) | 0.037 (5)* | |
H1WA | 0.460 (3) | 0.7048 (16) | 0.455 (2) | 0.050 (6)* | |
H1WB | 0.592 (3) | 0.6557 (17) | 0.464 (2) | 0.058 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0213 (5) | 0.0276 (5) | 0.0228 (5) | −0.0045 (4) | 0.0095 (4) | −0.0001 (4) |
O2 | 0.0242 (5) | 0.0226 (5) | 0.0198 (5) | −0.0055 (3) | 0.0091 (4) | −0.0022 (3) |
O3 | 0.0201 (5) | 0.0306 (5) | 0.0234 (5) | −0.0006 (4) | 0.0017 (4) | 0.0072 (4) |
O4 | 0.0149 (5) | 0.0421 (6) | 0.0260 (5) | −0.0032 (4) | 0.0041 (4) | 0.0052 (4) |
N1 | 0.0211 (6) | 0.0246 (6) | 0.0225 (6) | −0.0014 (4) | 0.0051 (4) | 0.0012 (4) |
N2 | 0.0186 (6) | 0.0276 (6) | 0.0228 (6) | −0.0015 (4) | 0.0080 (4) | −0.0011 (4) |
N3 | 0.0162 (5) | 0.0217 (6) | 0.0207 (6) | −0.0004 (4) | 0.0049 (4) | −0.0004 (4) |
N4 | 0.0160 (5) | 0.0271 (6) | 0.0195 (6) | 0.0000 (4) | 0.0036 (4) | 0.0034 (4) |
C1 | 0.0191 (6) | 0.0214 (6) | 0.0181 (6) | −0.0020 (5) | 0.0062 (5) | −0.0034 (5) |
C2 | 0.0213 (7) | 0.0352 (8) | 0.0266 (7) | −0.0055 (5) | 0.0115 (6) | −0.0021 (6) |
C3 | 0.0341 (8) | 0.0287 (7) | 0.0249 (7) | −0.0079 (6) | 0.0135 (6) | −0.0001 (5) |
C4 | 0.0294 (7) | 0.0245 (7) | 0.0220 (7) | −0.0022 (5) | 0.0056 (5) | 0.0015 (5) |
C5 | 0.0163 (6) | 0.0202 (6) | 0.0204 (6) | −0.0004 (4) | 0.0064 (5) | −0.0028 (5) |
C6 | 0.0169 (6) | 0.0250 (7) | 0.0196 (6) | −0.0029 (5) | 0.0061 (5) | −0.0025 (5) |
C7 | 0.0199 (7) | 0.0204 (6) | 0.0193 (6) | −0.0031 (5) | 0.0076 (5) | −0.0016 (5) |
C8 | 0.0196 (6) | 0.0197 (6) | 0.0188 (6) | 0.0010 (5) | 0.0047 (5) | −0.0012 (5) |
C9 | 0.0176 (6) | 0.0214 (6) | 0.0187 (6) | −0.0010 (5) | 0.0022 (5) | 0.0001 (5) |
C10 | 0.0268 (7) | 0.0274 (7) | 0.0236 (7) | −0.0028 (5) | 0.0101 (5) | −0.0012 (5) |
C11 | 0.0385 (8) | 0.0304 (8) | 0.0259 (7) | −0.0003 (6) | 0.0117 (6) | −0.0065 (6) |
C12 | 0.0416 (9) | 0.0246 (7) | 0.0333 (8) | −0.0079 (6) | 0.0090 (7) | −0.0081 (6) |
C13 | 0.0302 (7) | 0.0274 (7) | 0.0297 (7) | −0.0087 (6) | 0.0090 (6) | −0.0007 (6) |
C14 | 0.0176 (6) | 0.0258 (7) | 0.0179 (6) | −0.0007 (5) | 0.0034 (5) | 0.0008 (5) |
C15 | 0.0335 (8) | 0.0399 (8) | 0.0299 (8) | −0.0119 (6) | 0.0167 (6) | 0.0000 (6) |
O1W | 0.0237 (6) | 0.0415 (6) | 0.0361 (6) | 0.0028 (4) | 0.0114 (5) | 0.0038 (5) |
O2W | 0.0189 (5) | 0.0652 (8) | 0.0275 (6) | −0.0042 (5) | 0.0028 (5) | −0.0095 (5) |
O1—C14 | 1.3676 (16) | C4—H4A | 0.9500 |
O1—C15 | 1.4292 (16) | C6—C7 | 1.4237 (19) |
O2—C7 | 1.3765 (15) | C7—C8 | 1.3812 (18) |
O2—C9 | 1.3952 (16) | C9—C10 | 1.3802 (19) |
O3—H3 | 0.91 (3) | C9—C14 | 1.3970 (18) |
O3—C8 | 1.3212 (16) | C10—H10 | 0.9500 |
O4—C6 | 1.2398 (16) | C10—C11 | 1.396 (2) |
N1—C1 | 1.3297 (18) | C11—H11 | 0.9500 |
N1—C4 | 1.3378 (18) | C11—C12 | 1.372 (2) |
N2—C1 | 1.3351 (17) | C12—H12 | 0.9500 |
N2—C2 | 1.3347 (18) | C12—C13 | 1.394 (2) |
N3—C5 | 1.3013 (17) | C13—H13 | 0.9500 |
N3—C8 | 1.3653 (17) | C13—C14 | 1.390 (2) |
N4—C5 | 1.3554 (16) | C15—H15A | 0.9800 |
N4—C6 | 1.3874 (17) | C15—H15B | 0.9800 |
N4—H4 | 0.88 (2) | C15—H15C | 0.9800 |
C1—C5 | 1.4930 (17) | O1W—H1WA | 0.87 (2) |
C2—H2 | 0.9500 | O1W—H1WB | 0.89 (3) |
C2—C3 | 1.381 (2) | O2W—H2WA | 0.86 (2) |
C3—H3A | 0.9500 | O2W—H2WB | 0.91 (3) |
C3—C4 | 1.379 (2) | ||
C14—O1—C15 | 115.91 (11) | O3—C8—N3 | 117.94 (12) |
C7—O2—C9 | 115.24 (10) | O3—C8—C7 | 119.70 (12) |
C8—O3—H3 | 108.2 (15) | N3—C8—C7 | 122.35 (12) |
C1—N1—C4 | 116.50 (12) | O2—C9—C14 | 116.07 (11) |
C2—N2—C1 | 115.19 (12) | C10—C9—O2 | 123.42 (12) |
C5—N3—C8 | 116.97 (11) | C10—C9—C14 | 120.45 (12) |
C5—N4—C6 | 122.48 (11) | C9—C10—H10 | 120.0 |
C5—N4—H4 | 118.2 (13) | C9—C10—C11 | 119.98 (13) |
C6—N4—H4 | 119.3 (13) | C11—C10—H10 | 120.0 |
N1—C1—N2 | 126.84 (12) | C10—C11—H11 | 120.0 |
N1—C1—C5 | 115.28 (11) | C12—C11—C10 | 119.95 (13) |
N2—C1—C5 | 117.86 (11) | C12—C11—H11 | 120.0 |
N2—C2—H2 | 118.5 | C11—C12—H12 | 119.8 |
N2—C2—C3 | 123.04 (13) | C11—C12—C13 | 120.31 (14) |
C3—C2—H2 | 118.5 | C13—C12—H12 | 119.8 |
C2—C3—H3A | 121.7 | C12—C13—H13 | 119.9 |
C4—C3—C2 | 116.66 (13) | C14—C13—C12 | 120.22 (13) |
C4—C3—H3A | 121.7 | C14—C13—H13 | 119.9 |
N1—C4—C3 | 121.72 (13) | O1—C14—C9 | 116.50 (12) |
N1—C4—H4A | 119.1 | O1—C14—C13 | 124.41 (12) |
C3—C4—H4A | 119.1 | C13—C14—C9 | 119.09 (12) |
N3—C5—N4 | 124.06 (12) | O1—C15—H15A | 109.5 |
N3—C5—C1 | 120.51 (11) | O1—C15—H15B | 109.5 |
N4—C5—C1 | 115.37 (11) | O1—C15—H15C | 109.5 |
O4—C6—N4 | 120.94 (12) | H15A—C15—H15B | 109.5 |
O4—C6—C7 | 125.30 (12) | H15A—C15—H15C | 109.5 |
N4—C6—C7 | 113.76 (11) | H15B—C15—H15C | 109.5 |
O2—C7—C6 | 118.15 (11) | H1WA—O1W—H1WB | 107 (2) |
O2—C7—C8 | 121.47 (12) | H2WA—O2W—H2WB | 111 (2) |
C8—C7—C6 | 120.29 (12) | ||
O2—C7—C8—O3 | 1.07 (19) | C5—N4—C6—O4 | 176.19 (12) |
O2—C7—C8—N3 | −177.80 (11) | C5—N4—C6—C7 | −3.53 (18) |
O2—C9—C10—C11 | 176.86 (13) | C6—N4—C5—N3 | 2.0 (2) |
O2—C9—C14—O1 | 2.85 (17) | C6—N4—C5—C1 | −175.25 (11) |
O2—C9—C14—C13 | −176.50 (12) | C6—C7—C8—O3 | 177.58 (12) |
O4—C6—C7—O2 | 0.1 (2) | C6—C7—C8—N3 | −1.29 (19) |
O4—C6—C7—C8 | −176.55 (13) | C7—O2—C9—C10 | 13.23 (18) |
N1—C1—C5—N3 | −164.82 (12) | C7—O2—C9—C14 | −169.66 (11) |
N1—C1—C5—N4 | 12.53 (16) | C8—N3—C5—N4 | 0.20 (19) |
N2—C1—C5—N3 | 13.60 (18) | C8—N3—C5—C1 | 177.32 (11) |
N2—C1—C5—N4 | −169.04 (11) | C9—O2—C7—C6 | 76.38 (14) |
N2—C2—C3—C4 | 0.0 (2) | C9—O2—C7—C8 | −107.04 (13) |
N4—C6—C7—O2 | 179.77 (10) | C9—C10—C11—C12 | −0.6 (2) |
N4—C6—C7—C8 | 3.15 (18) | C10—C9—C14—O1 | −179.95 (12) |
C1—N1—C4—C3 | −2.3 (2) | C10—C9—C14—C13 | 0.7 (2) |
C1—N2—C2—C3 | −1.5 (2) | C10—C11—C12—C13 | 0.7 (2) |
C2—N2—C1—N1 | 1.32 (19) | C11—C12—C13—C14 | −0.1 (2) |
C2—N2—C1—C5 | −176.90 (11) | C12—C13—C14—O1 | −179.89 (13) |
C2—C3—C4—N1 | 2.0 (2) | C12—C13—C14—C9 | −0.6 (2) |
C4—N1—C1—N2 | 0.5 (2) | C14—C9—C10—C11 | −0.1 (2) |
C4—N1—C1—C5 | 178.78 (11) | C15—O1—C14—C9 | −173.34 (12) |
C5—N3—C8—O3 | −179.40 (11) | C15—O1—C14—C13 | 5.96 (19) |
C5—N3—C8—C7 | −0.51 (18) |
Cg3 is the centroid of the C9–C14 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2Wi | 0.91 (3) | 1.67 (3) | 2.5651 (15) | 172 (2) |
N4—H4···O1ii | 0.88 (2) | 2.08 (2) | 2.9313 (15) | 163.6 (18) |
O1W—H1WA···O4iii | 0.87 (2) | 2.05 (2) | 2.8917 (16) | 163 (2) |
O1W—H1WB···N2iv | 0.89 (3) | 2.01 (3) | 2.8823 (16) | 167 (2) |
O2W—H2WA···O4 | 0.86 (2) | 1.93 (3) | 2.7803 (15) | 172 (2) |
O2W—H2WB···O1Wv | 0.91 (3) | 1.80 (3) | 2.7050 (17) | 173 (2) |
C4—H4A···Cg3vi | 0.95 | 2.82 | 3.4083 (16) | 121 |
Symmetry codes: (i) x+1, −y+1/2, z+1/2; (ii) x, −y+1/2, z−1/2; (iii) −x+1, −y+1, −z+1; (iv) −x+2, −y+1, −z+1; (v) −x+1, y−1/2, −z+1/2; (vi) x, −y−1/2, z−3/2. |
Cg3 is the centroid of the C9–C14 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2Wi | 0.91 (3) | 1.67 (3) | 2.5651 (15) | 172 (2) |
N4—H4···O1ii | 0.88 (2) | 2.08 (2) | 2.9313 (15) | 163.6 (18) |
O1W—H1WA···O4iii | 0.87 (2) | 2.05 (2) | 2.8917 (16) | 163 (2) |
O1W—H1WB···N2iv | 0.89 (3) | 2.01 (3) | 2.8823 (16) | 167 (2) |
O2W—H2WA···O4 | 0.86 (2) | 1.93 (3) | 2.7803 (15) | 172 (2) |
O2W—H2WB···O1Wv | 0.91 (3) | 1.80 (3) | 2.7050 (17) | 173 (2) |
C4—H4A···Cg3vi | 0.95 | 2.82 | 3.4083 (16) | 121 |
Symmetry codes: (i) x+1, −y+1/2, z+1/2; (ii) x, −y+1/2, z−1/2; (iii) −x+1, −y+1, −z+1; (iv) −x+2, −y+1, −z+1; (v) −x+1, y−1/2, −z+1/2; (vi) x, −y−1/2, z−3/2. |
Acknowledgements
TSY thanks the University of Mysore for research facilities and is also grateful to the Principal, Maharani's Science College for Women, Mysore, for giving permission to undertake research. JPJ acknowledges the NSF–MRI program (grant No. CHE-1039027) for funds to purchase the X-ray diffractometer.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title compound, C15H12N4O4. 2 H2O, is an intermediate for the synthesis of bosentan. Pyrimidinediones are a class of chemical compounds characterized by a pyrimidine ring substituted with two carbonyl groups. A number of substituted pyrimidine-2,4-diones were synthesized and intensively studied as good reversible inhibitors of thymidine phosphorylase (Baker & Rzeszotarki,1967). 2,2'-Bipyrimidine has been used as a ligand in inorganic and organometallic chemistry (Hunziker & Ludi, 1977; Fabrice et al., 2008). The crystal structures of some related compounds are: four 7-aryl-substituted pyrido[2,3-d]pyrimidine -2,4(1H,3H)-diones: similar molecular structures but different crystal structures (Trilleras et al., 2009), diammonium 1,1',3,3'-tetra methyl-2,2',4,4',6,6'-hexaoxoperhydro-5,5'-bipyrimidine-5,5'-diide monohydrate (Fun et al., 2009), 4,6-dichloro-5-(2-methoxy phenoxy)-2,2'-bipyrimidine (Ren et al., 2011), 6-(3,5-dimethyl benzyl)-5-ethyl-1-[(3-phenylpropoxy) methyl]-1,2,3,4-tetrahydro pyrimidine-2,4-dione (El-Brollosy et al., 2012), 4-tert-butyl- N-[6-(2-hydroxyethoxy)-5-(2-methoxyphenoxy)-2-(pyrimidin-2-yl)pyrimidin -4-yl]benzene-1-sulfonamide monohydrate (Kaur et al., 2013), have been reported. In view of the importance of the title compound this paper reports its crystal structure.
The title compound crystallizes with two independent water molecules in the asymmetric unit (Fig. 1). In the molecule, the dihedral angle between the mean planes of the phenyl ring and pyrimidine ring and the pyrimidinyl-4-one is 85.1 (9)° and 82.1 (1)°, respectively. The mean plane of the pyrimidine ring is twisted by 12.8 (8)° from that of the pyrimidinyl-4-one ring. In addition, the hydroxy group and methoxy group are twisted from the pyrimidinyl-4-one and phenyl ring by -177.6 (8)° (H3/O3/C8/C7) and -173.3 (4)° (C9/C14/O1/C15), respectively. In the crystal, O—H···N and O—H···O hydrogen bonds involving both water molecules are present. N—H···O hydrogen bonds between molecules help strengthen the crystal lattice (Table. 1). In addition, weak C4—H4A···Cg3 and Cg1–Cg2 π–π intermolecular interactions are observed and contribute to crystal packing (Cg1–Cg2 = 3.6183 (8)Å; Cg1 = N1/C1/N2/C2/C3/C4; Cg2i = N3/C5/N4/C6/C7/C8; symmetry operator (i) -x,1-y,1-z). The hydrogen bonds link the molecules into a 2D network parallel to (0 1 0) (Fig. 2).