organic compounds
N-[2-(2,2-Dimethylpropanamido)pyrimidin-4-yl]-2,2-dimethylpropanamide n-hexane 0.25-solvate hemihydrate
aFaculty of Technology and Chemical Engineering, University of Technology and Life Sciences, Seminaryjna 3, PL-85-326 Bydgoszcz, Poland, bDepartment of Chemistrycv5431, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland, and cStructural Chemistry and Crystallography Group, University of Lodz, Pomorska 163/165, PL-90-236 Łódź, Poland
*Correspondence e-mail: lilach@uni.lodz.pl
The 14H22N4O2·0.25C6H14·0.5H2O, contains two independent molecules of 2,4-bis(pivaloylamino)pyrimidine (M) with similar conformations, one water molecule and one-half n-hexane solvent molecule situated on an inversion center. In one independent M molecule, one of the two tert-butyl groups is rotationally disordered between two orientations in a 3:2 ratio. The n-hexane solvent molecule is disordered between two conformations in the same ratio. The water molecule bridges two independent M molecules via O—H⋯O, N—H⋯O and O—H⋯N hydrogen bonds into a 2M·H2O unit, and these units are further linked by N—H⋯N hydrogen bonds into chains running in the [010] direction. Weak C—H⋯O interactions are observed between the adjacent chains.
of the title compound, CCCDC reference: 964448
Related literature
For the related structures of 2,4-bis(acyloamino)pyrimidines in the solid state and in solution, see: Ośmiałowski et al. (2012). For the related structures of 2,6-bis(acyloamino)pyridines, see: Ośmiałowski et al. (2010); Crane (2003).
Experimental
Crystal data
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Data collection: COLLECT (Bruker, 2008); cell DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2013 and publCIF (Westrip, 2010).
Supporting information
CCDC reference: 964448
10.1107/S160053681302713X/cv5431sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681302713X/cv5431Isup2.hkl
Supporting information file. DOI: 10.1107/S160053681302713X/cv5431Isup3.cml
The title compound was synthesized according to the method of Ośmiałowski et al. (2012). Crystals suitable for X-ray measurements were obtained by crystallization from n-hexane.
All non-hydrogen atoms were refined anisotropically. One t-butyl group (atoms C16, C17, C18) of molecule 1 as well as some atoms of hexane solvent molecule (C20 and all H-atoms) were refined as disordered over two sets of sites with occupancies fixed at 0.60:0.40. The C—C bond distances within the disordered t-butyl group as well as the C—C distances between disordered atoms within hexane moiety (pairs: C19—C20/C19—C20 and C21—C20/C21—C20A, respectively) were restrained to be approximately equal. Moreover, the Uij components of atoms in two t-butyl groups in molecule 1 were restrained to be similar. Additionally, the ADPs of the C16B atom were restrained to be approximately isotropic.
H atoms bonded to N atoms were located in a difference map and refined with distance restraints of N7—H7 and N13—H13 (molecule 1), N7A—H7A and N13A—H13A (molecule 2) = 0.88 (2) Å, and with Uiso(H) = 1.2Ueq(N). In the water molecule, H atoms were also located in a difference map and refined with distance restraints of O1—H1A and O1—H1B = 0.84 (2) Å, and with Uiso(H) = 1.5Ueq(O). Other H atoms were positioned geometrically and refined using a riding model with C—H = 0.95–0.99 Å and with Uiso(H) = 1.2 Ueq(C) or 1.5 Ueq(methyl C).
Data collection: COLLECT (Bruker, 2008); cell
DENZO-SMN (Otwinowski & Minor, 1997); data reduction: DENZO-SMN (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL2013 (Sheldrick, 2008) and publCIF (Westrip, 2010).Fig. 1. Two independent molecules M in (I), with atom labels and 50% probability displacement ellipsoids for non-H atoms. Only the major component of disordered t-butyl group is shown. Water and hexane solvent molecules are omitted for clarity. | |
Fig. 2. Part of the crystal structure of (I) showing the intermolecular hydrogen-bonds [symmetry codes: (i) x, 1 + y, z; (ii) x, y - 1, z; (iii) 1 - x, 1 - y,1 - z]. Hexane solvent molecule, the minor components of disordered t-butyl group and (C)—H atoms are omitted for clarity. |
2C14H22N4O2·0.5C6H14·H2O | Z = 2 |
Mr = 617.81 | F(000) = 670 |
Triclinic, P1 | Dx = 1.150 Mg m−3 |
a = 10.6055 (5) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 12.2181 (6) Å | Cell parameters from 7150 reflections |
c = 14.9774 (7) Å | θ = 0.4–28.3° |
α = 88.060 (3)° | µ = 0.08 mm−1 |
β = 73.093 (4)° | T = 123 K |
γ = 74.179 (3)° | Needle, colourless |
V = 1784.36 (16) Å3 | 0.30 × 0.05 × 0.04 mm |
Bruker–Nonius KappaCCD with APEXII detector diffractometer | 6422 independent reflections |
Radiation source: fine-focus sealed tube | 3597 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.100 |
Detector resolution: 9 pixels mm-1 | θmax = 25.3°, θmin = 2.3° |
ϕ and ω scans | h = −12→12 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | k = −14→14 |
Tmin = 0.977, Tmax = 0.997 | l = −16→17 |
21621 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.079 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0128P)2 + 3.1862P] where P = (Fo2 + 2Fc2)/3 |
6422 reflections | (Δ/σ)max = 0.001 |
451 parameters | Δρmax = 0.35 e Å−3 |
101 restraints | Δρmin = −0.24 e Å−3 |
2C14H22N4O2·0.5C6H14·H2O | γ = 74.179 (3)° |
Mr = 617.81 | V = 1784.36 (16) Å3 |
Triclinic, P1 | Z = 2 |
a = 10.6055 (5) Å | Mo Kα radiation |
b = 12.2181 (6) Å | µ = 0.08 mm−1 |
c = 14.9774 (7) Å | T = 123 K |
α = 88.060 (3)° | 0.30 × 0.05 × 0.04 mm |
β = 73.093 (4)° |
Bruker–Nonius KappaCCD with APEXII detector diffractometer | 6422 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) | 3597 reflections with I > 2σ(I) |
Tmin = 0.977, Tmax = 0.997 | Rint = 0.100 |
21621 measured reflections |
R[F2 > 2σ(F2)] = 0.079 | 101 restraints |
wR(F2) = 0.164 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.35 e Å−3 |
6422 reflections | Δρmin = −0.24 e Å−3 |
451 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O8 | 0.3412 (3) | 0.46261 (19) | 0.05984 (17) | 0.0307 (6) | |
O14 | 0.4845 (3) | 0.3749 (2) | 0.46471 (17) | 0.0358 (7) | |
N1 | 0.3512 (3) | 0.5088 (2) | 0.2372 (2) | 0.0233 (7) | |
N3 | 0.3818 (3) | 0.6952 (2) | 0.2389 (2) | 0.0285 (8) | |
N7 | 0.3042 (3) | 0.6391 (2) | 0.1249 (2) | 0.0256 (7) | |
H7 | 0.287 (4) | 0.7128 (17) | 0.117 (2) | 0.031* | |
N13 | 0.4056 (3) | 0.3746 (2) | 0.3391 (2) | 0.0262 (7) | |
H13 | 0.395 (4) | 0.333 (3) | 0.297 (2) | 0.031* | |
C2 | 0.3483 (4) | 0.6108 (3) | 0.2042 (2) | 0.0234 (8) | |
C4 | 0.4134 (4) | 0.6713 (3) | 0.3196 (3) | 0.0304 (9) | |
H4 | 0.4324 | 0.7296 | 0.3496 | 0.037* | |
C5 | 0.4204 (4) | 0.5693 (3) | 0.3616 (3) | 0.0266 (9) | |
H5 | 0.4425 | 0.5559 | 0.4188 | 0.032* | |
C6 | 0.3925 (4) | 0.4870 (3) | 0.3142 (2) | 0.0240 (8) | |
C8 | 0.3040 (4) | 0.5661 (3) | 0.0571 (2) | 0.0235 (8) | |
C9 | 0.2520 (4) | 0.6243 (3) | −0.0223 (2) | 0.0241 (8) | |
C10 | 0.3278 (5) | 0.7128 (4) | −0.0646 (3) | 0.0516 (13) | |
H10A | 0.3121 | 0.7713 | −0.0163 | 0.077* | |
H10B | 0.2935 | 0.7483 | −0.1157 | 0.077* | |
H10C | 0.4262 | 0.6754 | −0.0887 | 0.077* | |
C11 | 0.0990 (4) | 0.6824 (4) | 0.0157 (3) | 0.0479 (12) | |
H11A | 0.0835 | 0.7404 | 0.0642 | 0.072* | |
H11B | 0.0506 | 0.6256 | 0.0424 | 0.072* | |
H11C | 0.0644 | 0.7184 | −0.0352 | 0.072* | |
C12 | 0.2773 (5) | 0.5344 (3) | −0.0978 (3) | 0.0490 (12) | |
H12A | 0.2445 | 0.5706 | −0.1493 | 0.073* | |
H12B | 0.2281 | 0.4780 | −0.0717 | 0.073* | |
H12C | 0.3757 | 0.4966 | −0.1211 | 0.073* | |
C14 | 0.4569 (4) | 0.3226 (3) | 0.4087 (2) | 0.0249 (8) | |
C15 | 0.4773 (4) | 0.1939 (3) | 0.4109 (3) | 0.0348 (10) | |
C16 | 0.3527 (12) | 0.1542 (14) | 0.4115 (16) | 0.049 (4) | 0.6 |
H16A | 0.3759 | 0.0709 | 0.4125 | 0.074* | 0.6 |
H16B | 0.3252 | 0.1788 | 0.3554 | 0.074* | 0.6 |
H16C | 0.2769 | 0.1873 | 0.4672 | 0.074* | 0.6 |
C17 | 0.580 (3) | 0.145 (2) | 0.3155 (10) | 0.051 (4) | 0.6 |
H17A | 0.5968 | 0.0616 | 0.3125 | 0.077* | 0.6 |
H17B | 0.6658 | 0.1637 | 0.3080 | 0.077* | 0.6 |
H17C | 0.5409 | 0.1770 | 0.2653 | 0.077* | 0.6 |
C18 | 0.5496 (13) | 0.1468 (16) | 0.4841 (8) | 0.055 (4) | 0.6 |
H18A | 0.5631 | 0.0642 | 0.4858 | 0.083* | 0.6 |
H18B | 0.4934 | 0.1826 | 0.5455 | 0.083* | 0.6 |
H18C | 0.6388 | 0.1632 | 0.4680 | 0.083* | 0.6 |
C16B | 0.3332 (17) | 0.182 (2) | 0.425 (2) | 0.049 (5) | 0.4 |
H16G | 0.3356 | 0.1015 | 0.4267 | 0.074* | 0.4 |
H16H | 0.2996 | 0.2159 | 0.3728 | 0.074* | 0.4 |
H16I | 0.2719 | 0.2221 | 0.4837 | 0.074* | 0.4 |
C17B | 0.596 (4) | 0.128 (3) | 0.3298 (18) | 0.057 (6) | 0.4 |
H17G | 0.6042 | 0.0467 | 0.3344 | 0.085* | 0.4 |
H17H | 0.6810 | 0.1432 | 0.3322 | 0.085* | 0.4 |
H17I | 0.5782 | 0.1533 | 0.2706 | 0.085* | 0.4 |
C18B | 0.493 (2) | 0.162 (2) | 0.5081 (10) | 0.057 (5) | 0.4 |
H18G | 0.5070 | 0.0797 | 0.5141 | 0.086* | 0.4 |
H18H | 0.4102 | 0.2028 | 0.5563 | 0.086* | 0.4 |
H18I | 0.5723 | 0.1829 | 0.5158 | 0.086* | 0.4 |
O8A | 0.5012 (3) | 0.06266 (19) | 0.11110 (18) | 0.0308 (6) | |
O14A | −0.1719 (3) | 0.2917 (2) | 0.2818 (2) | 0.0401 (7) | |
N1A | 0.2274 (3) | 0.0794 (2) | 0.2012 (2) | 0.0241 (7) | |
N3A | 0.1930 (3) | −0.0951 (2) | 0.1596 (2) | 0.0291 (8) | |
N7A | 0.4086 (3) | −0.0859 (2) | 0.1563 (2) | 0.0278 (7) | |
H7A | 0.424 (4) | −0.1590 (17) | 0.163 (3) | 0.033* | |
N13A | 0.0596 (3) | 0.2457 (2) | 0.2438 (2) | 0.0278 (7) | |
H13A | 0.134 (3) | 0.268 (3) | 0.238 (3) | 0.033* | |
C2A | 0.2704 (4) | −0.0302 (3) | 0.1724 (2) | 0.0246 (8) | |
C4A | 0.0594 (4) | −0.0408 (3) | 0.1783 (3) | 0.0319 (9) | |
H4A | −0.0004 | −0.0836 | 0.1721 | 0.038* | |
C5A | 0.0030 (4) | 0.0726 (3) | 0.2060 (3) | 0.0296 (9) | |
H5A | −0.0920 | 0.1087 | 0.2172 | 0.035* | |
C6A | 0.0941 (4) | 0.1311 (3) | 0.2166 (2) | 0.0258 (9) | |
C8A | 0.5165 (4) | −0.0389 (3) | 0.1257 (2) | 0.0236 (8) | |
C9A | 0.6589 (4) | −0.1224 (3) | 0.1082 (2) | 0.0245 (8) | |
C10A | 0.6809 (4) | −0.2132 (3) | 0.0330 (3) | 0.0382 (10) | |
H10D | 0.7725 | −0.2662 | 0.0219 | 0.057* | |
H10E | 0.6728 | −0.1764 | −0.0250 | 0.057* | |
H10F | 0.6116 | −0.2550 | 0.0541 | 0.057* | |
C11A | 0.6756 (4) | −0.1802 (3) | 0.1980 (3) | 0.0378 (10) | |
H11D | 0.7674 | −0.2333 | 0.1852 | 0.057* | |
H11E | 0.6065 | −0.2219 | 0.2205 | 0.057* | |
H11F | 0.6638 | −0.1223 | 0.2457 | 0.057* | |
C12A | 0.7650 (4) | −0.0561 (3) | 0.0739 (3) | 0.0340 (10) | |
H12D | 0.8572 | −0.1083 | 0.0619 | 0.051* | |
H12E | 0.7513 | 0.0024 | 0.1217 | 0.051* | |
H12F | 0.7548 | −0.0196 | 0.0162 | 0.051* | |
C14A | −0.0697 (4) | 0.3197 (3) | 0.2778 (2) | 0.0283 (9) | |
C15A | −0.0712 (4) | 0.4379 (3) | 0.3093 (3) | 0.0303 (9) | |
C16A | 0.0042 (5) | 0.4278 (4) | 0.3835 (3) | 0.0526 (13) | |
H16D | 0.0024 | 0.5039 | 0.4034 | 0.079* | |
H16E | 0.0994 | 0.3825 | 0.3573 | 0.079* | |
H16F | −0.0411 | 0.3904 | 0.4375 | 0.079* | |
C17A | 0.0004 (4) | 0.4968 (3) | 0.2252 (3) | 0.0396 (11) | |
H17D | −0.0007 | 0.5725 | 0.2455 | 0.059* | |
H17E | −0.0480 | 0.5043 | 0.1776 | 0.059* | |
H17F | 0.0954 | 0.4511 | 0.1987 | 0.059* | |
C18A | −0.2197 (4) | 0.5074 (3) | 0.3492 (3) | 0.0453 (11) | |
H18D | −0.2227 | 0.5835 | 0.3699 | 0.068* | |
H18E | −0.2655 | 0.4693 | 0.4023 | 0.068* | |
H18F | −0.2666 | 0.5141 | 0.3009 | 0.068* | |
O1 | 0.3274 (3) | 0.2837 (2) | 0.19608 (18) | 0.0267 (6) | |
H1A | 0.367 (4) | 0.219 (2) | 0.168 (2) | 0.040* | |
H1B | 0.341 (4) | 0.336 (3) | 0.161 (2) | 0.040* | |
C19 | 0.0268 (6) | 0.7745 (4) | 0.3857 (4) | 0.0705 (16) | |
H19A | 0.0798 | 0.6973 | 0.3935 | 0.106* | 0.6 |
H19B | 0.0354 | 0.7854 | 0.3193 | 0.106* | 0.6 |
H19C | −0.0699 | 0.7851 | 0.4205 | 0.106* | 0.6 |
H19D | 0.0647 | 0.6924 | 0.3894 | 0.106* | 0.4 |
H19E | 0.0794 | 0.8003 | 0.3278 | 0.106* | 0.4 |
H19F | −0.0692 | 0.7906 | 0.3865 | 0.106* | 0.4 |
C20 | 0.0808 (9) | 0.8604 (8) | 0.4226 (8) | 0.062 (3) | 0.6 |
H20A | 0.1341 | 0.8212 | 0.4644 | 0.074* | 0.6 |
H20B | 0.1455 | 0.8850 | 0.3690 | 0.074* | 0.6 |
C20B | 0.0356 (16) | 0.8381 (9) | 0.4706 (8) | 0.057 (4) | 0.4 |
H20C | −0.0158 | 0.8098 | 0.5287 | 0.068* | 0.4 |
H20D | 0.1327 | 0.8194 | 0.4701 | 0.068* | 0.4 |
C21 | −0.0176 (6) | 0.9607 (4) | 0.4725 (4) | 0.0702 (16) | |
H21A | −0.0932 | 0.9351 | 0.5157 | 0.084* | 0.6 |
H21B | −0.0562 | 1.0066 | 0.4261 | 0.084* | 0.6 |
H21C | −0.1187 | 0.9775 | 0.4932 | 0.084* | 0.4 |
H21D | 0.0081 | 0.9829 | 0.4069 | 0.084* | 0.4 |
U11 | U22 | U33 | U12 | U13 | U23 | |
O8 | 0.0437 (18) | 0.0156 (13) | 0.0338 (15) | −0.0028 (12) | −0.0177 (13) | 0.0011 (11) |
O14 | 0.0485 (19) | 0.0318 (15) | 0.0313 (15) | −0.0069 (13) | −0.0216 (14) | −0.0006 (12) |
N1 | 0.0280 (19) | 0.0180 (15) | 0.0295 (17) | −0.0078 (13) | −0.0159 (14) | 0.0030 (13) |
N3 | 0.034 (2) | 0.0175 (16) | 0.0382 (19) | −0.0080 (14) | −0.0167 (16) | 0.0020 (14) |
N7 | 0.032 (2) | 0.0144 (15) | 0.0355 (18) | −0.0059 (14) | −0.0184 (15) | 0.0034 (14) |
N13 | 0.039 (2) | 0.0172 (16) | 0.0276 (17) | −0.0072 (14) | −0.0189 (15) | 0.0037 (13) |
C2 | 0.027 (2) | 0.0165 (18) | 0.030 (2) | −0.0055 (16) | −0.0129 (17) | 0.0023 (15) |
C4 | 0.031 (2) | 0.023 (2) | 0.040 (2) | −0.0082 (17) | −0.0135 (19) | −0.0071 (17) |
C5 | 0.029 (2) | 0.025 (2) | 0.030 (2) | −0.0089 (17) | −0.0129 (18) | 0.0015 (16) |
C6 | 0.023 (2) | 0.0225 (19) | 0.026 (2) | −0.0062 (16) | −0.0078 (17) | 0.0005 (16) |
C8 | 0.019 (2) | 0.023 (2) | 0.027 (2) | −0.0051 (16) | −0.0056 (16) | 0.0030 (16) |
C9 | 0.026 (2) | 0.0224 (18) | 0.0233 (19) | −0.0047 (16) | −0.0092 (16) | 0.0057 (15) |
C10 | 0.068 (3) | 0.045 (3) | 0.053 (3) | −0.028 (2) | −0.026 (3) | 0.023 (2) |
C11 | 0.034 (3) | 0.061 (3) | 0.042 (3) | 0.004 (2) | −0.016 (2) | 0.010 (2) |
C12 | 0.068 (3) | 0.036 (2) | 0.039 (2) | 0.004 (2) | −0.027 (2) | −0.002 (2) |
C14 | 0.021 (2) | 0.0254 (19) | 0.026 (2) | −0.0057 (16) | −0.0052 (17) | 0.0038 (16) |
C15 | 0.046 (3) | 0.025 (2) | 0.046 (2) | −0.0164 (18) | −0.027 (2) | 0.0111 (18) |
C16 | 0.047 (6) | 0.034 (8) | 0.084 (8) | −0.021 (5) | −0.036 (6) | 0.010 (6) |
C17 | 0.055 (7) | 0.016 (6) | 0.081 (7) | 0.006 (4) | −0.033 (5) | 0.000 (5) |
C18 | 0.069 (8) | 0.041 (7) | 0.082 (7) | −0.025 (7) | −0.056 (6) | 0.032 (6) |
C16B | 0.056 (8) | 0.026 (9) | 0.063 (9) | −0.024 (7) | −0.003 (7) | 0.017 (7) |
C17B | 0.050 (10) | 0.031 (11) | 0.088 (11) | −0.007 (8) | −0.020 (10) | 0.002 (9) |
C18B | 0.087 (13) | 0.044 (8) | 0.058 (8) | −0.015 (11) | −0.052 (8) | 0.020 (7) |
O8A | 0.0267 (16) | 0.0167 (13) | 0.0484 (16) | −0.0057 (11) | −0.0105 (13) | 0.0062 (11) |
O14A | 0.0256 (17) | 0.0328 (16) | 0.061 (2) | −0.0081 (13) | −0.0100 (14) | −0.0021 (13) |
N1A | 0.0225 (19) | 0.0166 (15) | 0.0345 (17) | −0.0053 (13) | −0.0103 (14) | 0.0016 (13) |
N3A | 0.030 (2) | 0.0208 (16) | 0.0425 (19) | −0.0107 (15) | −0.0159 (16) | 0.0030 (14) |
N7A | 0.0260 (19) | 0.0146 (15) | 0.047 (2) | −0.0060 (14) | −0.0175 (16) | 0.0045 (14) |
N13A | 0.023 (2) | 0.0195 (16) | 0.0410 (19) | −0.0089 (14) | −0.0061 (16) | −0.0016 (14) |
C2A | 0.026 (2) | 0.0202 (19) | 0.030 (2) | −0.0070 (17) | −0.0110 (17) | 0.0066 (16) |
C4A | 0.031 (3) | 0.026 (2) | 0.047 (2) | −0.0133 (18) | −0.019 (2) | 0.0019 (18) |
C5A | 0.022 (2) | 0.025 (2) | 0.043 (2) | −0.0055 (17) | −0.0113 (18) | −0.0041 (17) |
C6A | 0.026 (2) | 0.0202 (19) | 0.031 (2) | −0.0051 (17) | −0.0103 (17) | 0.0018 (16) |
C8A | 0.026 (2) | 0.0194 (19) | 0.0271 (19) | −0.0041 (16) | −0.0131 (17) | 0.0006 (15) |
C9A | 0.024 (2) | 0.0181 (18) | 0.033 (2) | −0.0031 (15) | −0.0123 (17) | 0.0007 (15) |
C10A | 0.039 (3) | 0.025 (2) | 0.049 (3) | 0.0015 (18) | −0.019 (2) | −0.0084 (18) |
C11A | 0.038 (3) | 0.033 (2) | 0.043 (2) | −0.0048 (19) | −0.018 (2) | 0.0049 (19) |
C12A | 0.024 (2) | 0.033 (2) | 0.043 (2) | −0.0019 (18) | −0.0111 (19) | −0.0002 (18) |
C14A | 0.025 (2) | 0.029 (2) | 0.027 (2) | −0.0035 (18) | −0.0050 (17) | 0.0010 (16) |
C15A | 0.028 (2) | 0.029 (2) | 0.033 (2) | −0.0038 (17) | −0.0112 (18) | −0.0036 (17) |
C16A | 0.068 (4) | 0.043 (3) | 0.051 (3) | −0.007 (2) | −0.030 (3) | −0.008 (2) |
C17A | 0.039 (3) | 0.024 (2) | 0.052 (3) | −0.0083 (19) | −0.008 (2) | −0.0008 (19) |
C18A | 0.036 (3) | 0.034 (2) | 0.053 (3) | −0.003 (2) | 0.002 (2) | −0.013 (2) |
O1 | 0.0328 (17) | 0.0163 (13) | 0.0333 (15) | −0.0067 (12) | −0.0131 (13) | 0.0009 (11) |
C19 | 0.073 (4) | 0.056 (3) | 0.070 (4) | −0.025 (3) | 0.005 (3) | −0.013 (3) |
C20 | 0.038 (6) | 0.059 (6) | 0.075 (7) | −0.017 (5) | 0.007 (5) | −0.020 (6) |
C20B | 0.049 (10) | 0.041 (7) | 0.062 (9) | −0.014 (6) | 0.010 (7) | 0.008 (7) |
C21 | 0.075 (4) | 0.059 (3) | 0.077 (4) | −0.021 (3) | −0.019 (3) | −0.007 (3) |
O8—C8 | 1.221 (4) | N3A—C4A | 1.340 (5) |
O14—C14 | 1.216 (4) | N7A—C8A | 1.373 (5) |
N1—C2 | 1.321 (4) | N7A—C2A | 1.390 (5) |
N1—C6 | 1.343 (4) | N7A—H7A | 0.871 (18) |
N3—C2 | 1.343 (4) | N13A—C14A | 1.381 (5) |
N3—C4 | 1.347 (5) | N13A—C6A | 1.391 (4) |
N7—C8 | 1.375 (4) | N13A—H13A | 0.886 (18) |
N7—C2 | 1.398 (5) | C4A—C5A | 1.375 (5) |
N7—H7 | 0.881 (18) | C4A—H4A | 0.9500 |
N13—C14 | 1.372 (5) | C5A—C6A | 1.394 (5) |
N13—C6 | 1.392 (4) | C5A—H5A | 0.9500 |
N13—H13 | 0.870 (18) | C8A—C9A | 1.529 (5) |
C4—C5 | 1.370 (5) | C9A—C12A | 1.523 (5) |
C4—H4 | 0.9500 | C9A—C10A | 1.530 (5) |
C5—C6 | 1.391 (5) | C9A—C11A | 1.531 (5) |
C5—H5 | 0.9500 | C10A—H10D | 0.9800 |
C8—C9 | 1.528 (5) | C10A—H10E | 0.9800 |
C9—C12 | 1.517 (5) | C10A—H10F | 0.9800 |
C9—C11 | 1.524 (5) | C11A—H11D | 0.9800 |
C9—C10 | 1.532 (5) | C11A—H11E | 0.9800 |
C10—H10A | 0.9800 | C11A—H11F | 0.9800 |
C10—H10B | 0.9800 | C12A—H12D | 0.9800 |
C10—H10C | 0.9800 | C12A—H12E | 0.9800 |
C11—H11A | 0.9800 | C12A—H12F | 0.9800 |
C11—H11B | 0.9800 | C14A—C15A | 1.529 (5) |
C11—H11C | 0.9800 | C15A—C18A | 1.522 (5) |
C12—H12A | 0.9800 | C15A—C16A | 1.531 (5) |
C12—H12B | 0.9800 | C15A—C17A | 1.537 (5) |
C12—H12C | 0.9800 | C16A—H16D | 0.9800 |
C14—C15 | 1.529 (5) | C16A—H16E | 0.9800 |
C15—C16 | 1.524 (10) | C16A—H16F | 0.9800 |
C15—C17B | 1.525 (13) | C17A—H17D | 0.9800 |
C15—C18 | 1.526 (10) | C17A—H17E | 0.9800 |
C15—C16B | 1.527 (13) | C17A—H17F | 0.9800 |
C15—C18B | 1.539 (12) | C18A—H18D | 0.9800 |
C15—C17 | 1.543 (10) | C18A—H18E | 0.9800 |
C16—H16A | 0.9800 | C18A—H18F | 0.9800 |
C16—H16B | 0.9800 | O1—H1A | 0.841 (19) |
C16—H16C | 0.9800 | O1—H1B | 0.828 (18) |
C17—H17A | 0.9800 | C19—C20 | 1.512 (9) |
C17—H17B | 0.9800 | C19—C20B | 1.550 (12) |
C17—H17C | 0.9800 | C19—H19A | 0.9800 |
C18—H18A | 0.9800 | C19—H19B | 0.9800 |
C18—H18B | 0.9800 | C19—H19C | 0.9800 |
C18—H18C | 0.9800 | C19—H19D | 0.9800 |
C16B—H16G | 0.9800 | C19—H19E | 0.9800 |
C16B—H16H | 0.9800 | C19—H19F | 0.9800 |
C16B—H16I | 0.9800 | C20—C21 | 1.435 (9) |
C17B—H17G | 0.9800 | C20—H20A | 0.9900 |
C17B—H17H | 0.9800 | C20—H20B | 0.9900 |
C17B—H17I | 0.9800 | C20B—C21 | 1.447 (11) |
C18B—H18G | 0.9800 | C20B—H20C | 0.9900 |
C18B—H18H | 0.9800 | C20B—H20D | 0.9900 |
C18B—H18I | 0.9800 | C21—C21i | 1.473 (10) |
O8A—C8A | 1.227 (4) | C21—H21A | 0.9900 |
O14A—C14A | 1.208 (4) | C21—H21B | 0.9900 |
N1A—C2A | 1.334 (4) | C21—H21C | 0.9900 |
N1A—C6A | 1.336 (5) | C21—H21D | 0.9900 |
N3A—C2A | 1.339 (4) | ||
C2—N1—C6 | 116.2 (3) | C6A—N13A—H13A | 111 (3) |
C2—N3—C4 | 113.6 (3) | N1A—C2A—N3A | 126.7 (3) |
C8—N7—C2 | 127.7 (3) | N1A—C2A—N7A | 117.9 (3) |
C8—N7—H7 | 120 (2) | N3A—C2A—N7A | 115.3 (3) |
C2—N7—H7 | 112 (2) | N3A—C4A—C5A | 124.4 (3) |
C14—N13—C6 | 127.1 (3) | N3A—C4A—H4A | 117.8 |
C14—N13—H13 | 120 (2) | C5A—C4A—H4A | 117.8 |
C6—N13—H13 | 112 (2) | C4A—C5A—C6A | 115.8 (4) |
N1—C2—N3 | 127.5 (3) | C4A—C5A—H5A | 122.1 |
N1—C2—N7 | 118.9 (3) | C6A—C5A—H5A | 122.1 |
N3—C2—N7 | 113.7 (3) | N1A—C6A—N13A | 112.8 (3) |
N3—C4—C5 | 125.0 (3) | N1A—C6A—C5A | 121.7 (3) |
N3—C4—H4 | 117.5 | N13A—C6A—C5A | 125.5 (3) |
C5—C4—H4 | 117.5 | O8A—C8A—N7A | 122.8 (3) |
C4—C5—C6 | 114.9 (3) | O8A—C8A—C9A | 121.7 (3) |
C4—C5—H5 | 122.5 | N7A—C8A—C9A | 115.4 (3) |
C6—C5—H5 | 122.5 | C12A—C9A—C8A | 108.2 (3) |
N1—C6—C5 | 122.4 (3) | C12A—C9A—C10A | 109.1 (3) |
N1—C6—N13 | 112.6 (3) | C8A—C9A—C10A | 109.9 (3) |
C5—C6—N13 | 124.9 (3) | C12A—C9A—C11A | 109.5 (3) |
O8—C8—N7 | 123.0 (3) | C8A—C9A—C11A | 110.8 (3) |
O8—C8—C9 | 122.1 (3) | C10A—C9A—C11A | 109.4 (3) |
N7—C8—C9 | 114.9 (3) | C9A—C10A—H10D | 109.5 |
C12—C9—C11 | 110.0 (3) | C9A—C10A—H10E | 109.5 |
C12—C9—C8 | 108.6 (3) | H10D—C10A—H10E | 109.5 |
C11—C9—C8 | 108.9 (3) | C9A—C10A—H10F | 109.5 |
C12—C9—C10 | 108.8 (3) | H10D—C10A—H10F | 109.5 |
C11—C9—C10 | 109.6 (3) | H10E—C10A—H10F | 109.5 |
C8—C9—C10 | 110.9 (3) | C9A—C11A—H11D | 109.5 |
C9—C10—H10A | 109.5 | C9A—C11A—H11E | 109.5 |
C9—C10—H10B | 109.5 | H11D—C11A—H11E | 109.5 |
H10A—C10—H10B | 109.5 | C9A—C11A—H11F | 109.5 |
C9—C10—H10C | 109.5 | H11D—C11A—H11F | 109.5 |
H10A—C10—H10C | 109.5 | H11E—C11A—H11F | 109.5 |
H10B—C10—H10C | 109.5 | C9A—C12A—H12D | 109.5 |
C9—C11—H11A | 109.5 | C9A—C12A—H12E | 109.5 |
C9—C11—H11B | 109.5 | H12D—C12A—H12E | 109.5 |
H11A—C11—H11B | 109.5 | C9A—C12A—H12F | 109.5 |
C9—C11—H11C | 109.5 | H12D—C12A—H12F | 109.5 |
H11A—C11—H11C | 109.5 | H12E—C12A—H12F | 109.5 |
H11B—C11—H11C | 109.5 | O14A—C14A—N13A | 121.9 (3) |
C9—C12—H12A | 109.5 | O14A—C14A—C15A | 123.7 (3) |
C9—C12—H12B | 109.5 | N13A—C14A—C15A | 114.4 (3) |
H12A—C12—H12B | 109.5 | C18A—C15A—C14A | 108.4 (3) |
C9—C12—H12C | 109.5 | C18A—C15A—C16A | 110.2 (3) |
H12A—C12—H12C | 109.5 | C14A—C15A—C16A | 110.1 (3) |
H12B—C12—H12C | 109.5 | C18A—C15A—C17A | 109.6 (3) |
O14—C14—N13 | 122.6 (3) | C14A—C15A—C17A | 109.6 (3) |
O14—C14—C15 | 122.2 (3) | C16A—C15A—C17A | 109.0 (4) |
N13—C14—C15 | 115.2 (3) | C15A—C16A—H16D | 109.5 |
C16—C15—C18 | 117.0 (11) | C15A—C16A—H16E | 109.5 |
C17B—C15—C16B | 120 (2) | H16D—C16A—H16E | 109.5 |
C16—C15—C14 | 115.5 (7) | C15A—C16A—H16F | 109.5 |
C17B—C15—C14 | 112.8 (18) | H16D—C16A—H16F | 109.5 |
C18—C15—C14 | 109.1 (8) | H16E—C16A—H16F | 109.5 |
C16B—C15—C14 | 103.2 (10) | C15A—C17A—H17D | 109.5 |
C17B—C15—C18B | 114.3 (16) | C15A—C17A—H17E | 109.5 |
C16B—C15—C18B | 99.5 (15) | H17D—C17A—H17E | 109.5 |
C14—C15—C18B | 105.2 (12) | C15A—C17A—H17F | 109.5 |
C16—C15—C17 | 102.4 (16) | H17D—C17A—H17F | 109.5 |
C18—C15—C17 | 106.1 (11) | H17E—C17A—H17F | 109.5 |
C14—C15—C17 | 105.5 (11) | C15A—C18A—H18D | 109.5 |
C15—C16—H16A | 109.5 | C15A—C18A—H18E | 109.5 |
C15—C16—H16B | 109.5 | H18D—C18A—H18E | 109.5 |
H16A—C16—H16B | 109.5 | C15A—C18A—H18F | 109.5 |
C15—C16—H16C | 109.5 | H18D—C18A—H18F | 109.5 |
H16A—C16—H16C | 109.5 | H18E—C18A—H18F | 109.5 |
H16B—C16—H16C | 109.5 | H1A—O1—H1B | 111 (4) |
C15—C17—H17A | 109.5 | C20—C19—H19A | 109.5 |
C15—C17—H17B | 109.5 | C20—C19—H19B | 109.5 |
H17A—C17—H17B | 109.5 | H19A—C19—H19B | 109.5 |
C15—C17—H17C | 109.5 | C20—C19—H19C | 109.5 |
H17A—C17—H17C | 109.5 | H19A—C19—H19C | 109.5 |
H17B—C17—H17C | 109.5 | H19B—C19—H19C | 109.5 |
C15—C18—H18A | 109.5 | C20B—C19—H19D | 109.5 |
C15—C18—H18B | 109.5 | C20B—C19—H19E | 109.5 |
H18A—C18—H18B | 109.5 | H19D—C19—H19E | 109.5 |
C15—C18—H18C | 109.5 | C20B—C19—H19F | 109.5 |
H18A—C18—H18C | 109.5 | H19D—C19—H19F | 109.5 |
H18B—C18—H18C | 109.5 | H19E—C19—H19F | 109.5 |
C15—C16B—H16G | 109.5 | C21—C20—C19 | 117.4 (7) |
C15—C16B—H16H | 109.5 | C21—C20—H20A | 107.9 |
H16G—C16B—H16H | 109.5 | C19—C20—H20A | 107.9 |
C15—C16B—H16I | 109.5 | C21—C20—H20B | 107.9 |
H16G—C16B—H16I | 109.5 | C19—C20—H20B | 107.9 |
H16H—C16B—H16I | 109.5 | H20A—C20—H20B | 107.2 |
C15—C17B—H17G | 109.5 | C21—C20B—C19 | 114.3 (9) |
C15—C17B—H17H | 109.5 | C21—C20B—H20C | 108.7 |
H17G—C17B—H17H | 109.5 | C19—C20B—H20C | 108.7 |
C15—C17B—H17I | 109.5 | C21—C20B—H20D | 108.7 |
H17G—C17B—H17I | 109.5 | C19—C20B—H20D | 108.7 |
H17H—C17B—H17I | 109.5 | H20C—C20B—H20D | 107.6 |
C15—C18B—H18G | 109.5 | C20—C21—C21i | 122.8 (7) |
C15—C18B—H18H | 109.5 | C20B—C21—C21i | 123.2 (8) |
H18G—C18B—H18H | 109.5 | C20—C21—H21A | 106.6 |
C15—C18B—H18I | 109.5 | C21i—C21—H21A | 106.6 |
H18G—C18B—H18I | 109.5 | C20—C21—H21B | 106.6 |
H18H—C18B—H18I | 109.5 | C21i—C21—H21B | 106.6 |
C2A—N1A—C6A | 116.9 (3) | H21A—C21—H21B | 106.6 |
C2A—N3A—C4A | 114.4 (3) | C20B—C21—H21C | 106.5 |
C8A—N7A—C2A | 126.9 (3) | C21i—C21—H21C | 106.5 |
C8A—N7A—H7A | 120 (3) | C20B—C21—H21D | 106.5 |
C2A—N7A—H7A | 113 (3) | C21i—C21—H21D | 106.5 |
C14A—N13A—C6A | 127.9 (3) | H21C—C21—H21D | 106.5 |
C14A—N13A—H13A | 121 (2) | ||
C6—N1—C2—N3 | −0.1 (6) | C6A—N1A—C2A—N3A | −1.8 (5) |
C6—N1—C2—N7 | −179.1 (3) | C6A—N1A—C2A—N7A | −179.7 (3) |
C4—N3—C2—N1 | −4.2 (5) | C4A—N3A—C2A—N1A | 0.0 (5) |
C4—N3—C2—N7 | 174.9 (3) | C4A—N3A—C2A—N7A | 177.9 (3) |
C8—N7—C2—N1 | −23.1 (6) | C8A—N7A—C2A—N1A | −31.5 (5) |
C8—N7—C2—N3 | 157.8 (3) | C8A—N7A—C2A—N3A | 150.3 (3) |
C2—N3—C4—C5 | 3.9 (6) | C2A—N3A—C4A—C5A | 1.8 (5) |
N3—C4—C5—C6 | 0.4 (6) | N3A—C4A—C5A—C6A | −1.7 (6) |
C2—N1—C6—C5 | 5.0 (5) | C2A—N1A—C6A—N13A | −178.2 (3) |
C2—N1—C6—N13 | −174.1 (3) | C2A—N1A—C6A—C5A | 1.9 (5) |
C4—C5—C6—N1 | −5.1 (5) | C14A—N13A—C6A—N1A | −169.9 (3) |
C4—C5—C6—N13 | 173.9 (4) | C14A—N13A—C6A—C5A | 10.0 (6) |
C14—N13—C6—N1 | 173.8 (3) | C4A—C5A—C6A—N1A | −0.3 (5) |
C14—N13—C6—C5 | −5.3 (6) | C4A—C5A—C6A—N13A | 179.9 (3) |
C2—N7—C8—O8 | 1.9 (6) | C2A—N7A—C8A—O8A | 2.1 (6) |
C2—N7—C8—C9 | −178.6 (3) | C2A—N7A—C8A—C9A | −176.3 (3) |
O8—C8—C9—C12 | −8.7 (5) | O8A—C8A—C9A—C12A | 1.1 (5) |
N7—C8—C9—C12 | 171.8 (3) | N7A—C8A—C9A—C12A | 179.4 (3) |
O8—C8—C9—C11 | 111.1 (4) | O8A—C8A—C9A—C10A | −117.9 (4) |
N7—C8—C9—C11 | −68.4 (4) | N7A—C8A—C9A—C10A | 60.4 (4) |
O8—C8—C9—C10 | −128.2 (4) | O8A—C8A—C9A—C11A | 121.0 (4) |
N7—C8—C9—C10 | 52.3 (4) | N7A—C8A—C9A—C11A | −60.6 (4) |
C6—N13—C14—O14 | 8.2 (6) | C6A—N13A—C14A—O14A | −5.3 (6) |
C6—N13—C14—C15 | −171.8 (3) | C6A—N13A—C14A—C15A | 174.7 (3) |
O14—C14—C15—C16 | 127.7 (10) | O14A—C14A—C15A—C18A | 2.7 (5) |
N13—C14—C15—C16 | −52.3 (10) | N13A—C14A—C15A—C18A | −177.3 (3) |
O14—C14—C15—C17B | −109 (2) | O14A—C14A—C15A—C16A | 123.3 (4) |
N13—C14—C15—C17B | 71 (2) | N13A—C14A—C15A—C16A | −56.7 (4) |
O14—C14—C15—C18 | −6.4 (7) | O14A—C14A—C15A—C17A | −116.8 (4) |
N13—C14—C15—C18 | 173.6 (6) | N13A—C14A—C15A—C17A | 63.2 (4) |
O14—C14—C15—C16B | 120.1 (13) | C20B—C19—C20—C21 | −64.2 (11) |
N13—C14—C15—C16B | −59.9 (13) | C20—C19—C20B—C21 | 60.4 (10) |
O14—C14—C15—C18B | 16.2 (10) | C19—C20—C21—C20B | 65.7 (12) |
N13—C14—C15—C18B | −163.8 (9) | C19—C20—C21—C21i | 167.6 (7) |
O14—C14—C15—C17 | −120.0 (13) | C19—C20B—C21—C20 | −60.0 (10) |
N13—C14—C15—C17 | 60.0 (13) | C19—C20B—C21—C21i | −160.5 (8) |
Symmetry code: (i) −x, −y+2, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O8A | 0.84 (2) | 2.08 (2) | 2.910 (3) | 167 (4) |
O1—H1A···N1A | 0.84 (2) | 2.51 (4) | 2.958 (4) | 115 (3) |
O1—H1B···O8 | 0.83 (2) | 2.13 (2) | 2.943 (3) | 168 (4) |
O1—H1B···N1 | 0.83 (2) | 2.48 (4) | 2.931 (4) | 115 (3) |
N7—H7···N3Aii | 0.88 (2) | 2.32 (2) | 3.144 (4) | 156 (3) |
N13—H13···O1 | 0.87 (2) | 2.02 (2) | 2.864 (4) | 162 (4) |
N7A—H7A···N3iii | 0.87 (2) | 2.16 (2) | 2.958 (4) | 152 (3) |
N13A—H13A···O1 | 0.89 (2) | 2.02 (2) | 2.882 (4) | 164 (4) |
C5—H5···O14iv | 0.95 | 2.37 | 3.205 (5) | 147 |
Symmetry codes: (ii) x, y+1, z; (iii) x, y−1, z; (iv) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O8A | 0.841 (19) | 2.08 (2) | 2.910 (3) | 167 (4) |
O1—H1A···N1A | 0.841 (19) | 2.51 (4) | 2.958 (4) | 115 (3) |
O1—H1B···O8 | 0.828 (18) | 2.13 (2) | 2.943 (3) | 168 (4) |
O1—H1B···N1 | 0.828 (18) | 2.48 (4) | 2.931 (4) | 115 (3) |
N7—H7···N3Ai | 0.881 (18) | 2.32 (2) | 3.144 (4) | 156 (3) |
N13—H13···O1 | 0.870 (18) | 2.02 (2) | 2.864 (4) | 162 (4) |
N7A—H7A···N3ii | 0.871 (18) | 2.16 (2) | 2.958 (4) | 152 (3) |
N13A—H13A···O1 | 0.886 (18) | 2.02 (2) | 2.882 (4) | 164 (4) |
C5—H5···O14iii | 0.95 | 2.37 | 3.205 (5) | 147 |
Symmetry codes: (i) x, y+1, z; (ii) x, y−1, z; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
The financial support from the National Science Centre in Kraków (grant No. NCN204 356840) is gratefully acknowledged. Academy Professor Kari Rissanen is also gratefully acknowledged for financial support (Academy of Finland grant Nos. 122350, 140718, 265328 and 263256).
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The 2,4-bis(pivaloylamino)pyrimidine is able to form various rotamers in solution (Ośmiałowski et al., 2012). The high flexibility of this molecule with respect to the related pyridine derivatives is caused by the presence of two nitrogen atoms within the aromatic ring. This was confirmed by studies of association of such derivatives with various supramolecular counterparts (Ośmiałowski et al., 2010; 2012). In the crystal structure of the related pyridine derivative (2,6-bis(pivaloylamino)pyridine) a weak N—H···O═C interaction was found, which further links the molecules into chain motif (Crane, 2003).
The 2,4-bis(pivaloylamino)pyrimidine was crystallized from n-hexane as hemisolvate monohydrate. In the asymmetric unit there are two independent molecules of the title compound (Figure 1). Water molecule interacts with these molecules via O—H···O, N—H···O and O—H···N intermolecular hydrogen bonds (Table 1) thereby joins them into hydrogen-bonded dimer (Figure 2). It is worth mentioning that water molecule incorporated between two subjected molecules forces those to adopt the Z,E,Z,Z conformation (Ośmiałowski et al., 2012), in which the electron repulsion between heterocyclic nitrogen atoms (N1, N1A) and carbonyl oxygen atoms (O8, O8A) are observed.
Furthermore, each independent molecule forms an intermolecular N—H···N hydrogen bond (Table 1), thus producing infinite chain of dimers running parallel to the [010] direction. Two centrosymmetrically related chains interact each other via weak C—H···O interactions (Table 1).
The partially disordered n-hexane solvent molecule lies on the inversion centre. In the crystal lattice it is surrounded by the terminal t-butyl groups. This arrangement precludes any significant intermolecular interactions with other molecules in crystal.