organic compounds
Bis{4-[(1,3-benzodioxol-5-yl)methyl]piperazin-1-yl}methane
aDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, and bDepartment of Chemistry, Keene State College, 229 Main Street, Keene, NH 03435-2001, USA
*Correspondence e-mail: jjasinski@keene.edu
In the title compound, C25H32N4O4, both piperazine rings adopt a chair conformation. One of dioxolane ring systems is essentially planar [dihedral angle = 0.9 (2)°] while the other adopts a slightly disordered the mean plane of the dioxolane ring being twisted by 3.6 (2)° from that of the benzene ring. The dihedral angle between the benzene rings is 69.9 (5)°. No classical hydrogen bonds were observed.
CCDC reference: 966213
Related literature
For the biological activity of piperazines, see: Choudhary et al. (2006); Kharb et al. (2012); Millan et al. (2001); Brockunier et al. (2004); Bogatcheva et al. (2006); Elliott (2011). For related structures, see: Capuano et al. (2000). For puckering parameters, see Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
Data collection: CrysAlis PRO (Agilent, 2012); cell CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.
Supporting information
CCDC reference: 966213
10.1107/S1600536813028109/fj2646sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813028109/fj2646Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813028109/fj2646Isup3.cml
0.5 g of 1-piperonylpiperazine (Sigma-Aldrich) was dissolved in 5 ml of methanol at 333 K with stirring for 10 min and left for slow evaporation. After two days, crystal formation was not observed. For the same compound, 5 ml of dimethyl formamide was added at 333 K with stirring for 15 min and left for slow evaporation. X-ray quality crystals were obtained and were used as such (m.p.: 308-312 K.)
H1A and H1B were located by a difference map and refined isotropically. All of the remaining H atoms were placed in their calculated positions and then refined using the riding model with Atom—H lengths of 0.93Å (CH) or 0.97Å (CH2). Isotropic displacement parameters for these atoms were set to 1.2 (CH, CH2) times Ueq of the parent atom.
Data collection: CrysAlis PRO (Agilent, 2012); cell
CrysAlis PRO (Agilent, 2012); data reduction: CrysAlis RED (Agilent, 2012); program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. ORTEP drawing of (I) (C25H32N4O4) showing the labeling scheme with 30% probability displacement ellipsoids. |
C25H32N4O4 | Dx = 1.312 Mg m−3 |
Mr = 452.55 | Cu Kα radiation, λ = 1.54184 Å |
Orthorhombic, Pn21a | Cell parameters from 5154 reflections |
a = 38.8025 (10) Å | θ = 4.5–72.4° |
b = 9.7675 (2) Å | µ = 0.72 mm−1 |
c = 6.09571 (13) Å | T = 173 K |
V = 2310.29 (10) Å3 | Irregular, colourless |
Z = 4 | 0.38 × 0.21 × 0.11 mm |
F(000) = 968 |
Agilent Xcalibur (Eos, Gemini) diffractometer | 4199 independent reflections |
Radiation source: Enhance (Cu) X-ray Source | 3869 reflections with I > 2σ(I) |
Detector resolution: 16.0416 pixels mm-1 | Rint = 0.046 |
ω scans | θmax = 72.6°, θmin = 4.6° |
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012) | h = −43→48 |
Tmin = 0.836, Tmax = 1.000 | k = −11→12 |
13559 measured reflections | l = −5→7 |
Refinement on F2 | H atoms treated by a mixture of independent and constrained refinement |
Least-squares matrix: full | w = 1/[σ2(Fo2) + (0.0485P)2 + 0.6698P] where P = (Fo2 + 2Fc2)/3 |
R[F2 > 2σ(F2)] = 0.041 | (Δ/σ)max < 0.001 |
wR(F2) = 0.108 | Δρmax = 0.22 e Å−3 |
S = 1.02 | Δρmin = −0.17 e Å−3 |
4199 reflections | Extinction correction: SHELXL2012 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
307 parameters | Extinction coefficient: 0.0016 (2) |
1 restraint | Absolute structure: Flack parameter determined using 1513 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
Hydrogen site location: mixed | Absolute structure parameter: −0.03 (15) |
C25H32N4O4 | V = 2310.29 (10) Å3 |
Mr = 452.55 | Z = 4 |
Orthorhombic, Pn21a | Cu Kα radiation |
a = 38.8025 (10) Å | µ = 0.72 mm−1 |
b = 9.7675 (2) Å | T = 173 K |
c = 6.09571 (13) Å | 0.38 × 0.21 × 0.11 mm |
Agilent Xcalibur (Eos, Gemini) diffractometer | 4199 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012) | 3869 reflections with I > 2σ(I) |
Tmin = 0.836, Tmax = 1.000 | Rint = 0.046 |
13559 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.108 | Δρmax = 0.22 e Å−3 |
S = 1.02 | Δρmin = −0.17 e Å−3 |
4199 reflections | Absolute structure: Flack parameter determined using 1513 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
307 parameters | Absolute structure parameter: −0.03 (15) |
1 restraint |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.31516 (6) | 0.5691 (3) | 1.0003 (4) | 0.0425 (5) | |
O2 | 0.31379 (7) | 0.7799 (3) | 0.8258 (4) | 0.0534 (7) | |
O3 | 0.75845 (6) | 0.5660 (3) | 0.1266 (4) | 0.0452 (6) | |
O4 | 0.77389 (6) | 0.4101 (3) | −0.1424 (4) | 0.0431 (6) | |
N1 | 0.50857 (6) | 0.5885 (3) | 0.2715 (4) | 0.0316 (6) | |
N2 | 0.43489 (6) | 0.5829 (3) | 0.2856 (4) | 0.0283 (5) | |
N3 | 0.56439 (6) | 0.5613 (3) | 0.1084 (4) | 0.0305 (5) | |
N4 | 0.62717 (6) | 0.6657 (3) | −0.0775 (4) | 0.0287 (5) | |
C0AA | 0.54264 (8) | 0.5299 (4) | 0.2949 (5) | 0.0359 (7) | |
C2 | 0.48991 (8) | 0.5896 (4) | 0.4788 (5) | 0.0388 (8) | |
H2A | 0.5031 | 0.6394 | 0.5879 | 0.047* | |
H2B | 0.4868 | 0.4965 | 0.5306 | 0.047* | |
C3 | 0.45513 (8) | 0.6567 (4) | 0.4487 (5) | 0.0363 (7) | |
H3A | 0.4429 | 0.6576 | 0.5875 | 0.044* | |
H3B | 0.4583 | 0.7508 | 0.4018 | 0.044* | |
C4 | 0.45353 (7) | 0.5831 (4) | 0.0781 (4) | 0.0320 (6) | |
H4A | 0.4566 | 0.6766 | 0.0279 | 0.038* | |
H4B | 0.4403 | 0.5341 | −0.0317 | 0.038* | |
C5 | 0.48843 (8) | 0.5158 (3) | 0.1056 (5) | 0.0335 (7) | |
H5A | 0.4854 | 0.4211 | 0.1496 | 0.040* | |
H5B | 0.5007 | 0.5169 | −0.0332 | 0.040* | |
C6 | 0.40051 (8) | 0.6420 (3) | 0.2635 (5) | 0.0336 (7) | |
H6A | 0.3892 | 0.6021 | 0.1368 | 0.040* | |
H6B | 0.4026 | 0.7397 | 0.2382 | 0.040* | |
C7 | 0.37846 (7) | 0.6181 (3) | 0.4645 (5) | 0.0290 (6) | |
C8 | 0.37856 (7) | 0.4919 (3) | 0.5700 (5) | 0.0291 (6) | |
H8 | 0.3930 | 0.4234 | 0.5177 | 0.035* | |
C9 | 0.35775 (7) | 0.4641 (3) | 0.7517 (5) | 0.0304 (6) | |
H9 | 0.3578 | 0.3789 | 0.8197 | 0.036* | |
C10 | 0.33726 (7) | 0.5687 (3) | 0.8245 (4) | 0.0297 (6) | |
C11 | 0.30024 (9) | 0.7027 (4) | 1.0040 (6) | 0.0445 (8) | |
H11A | 0.2754 | 0.6961 | 0.9910 | 0.053* | |
H11B | 0.3056 | 0.7478 | 1.1416 | 0.053* | |
C12 | 0.33670 (8) | 0.6945 (3) | 0.7208 (5) | 0.0331 (7) | |
C13 | 0.35674 (8) | 0.7227 (3) | 0.5419 (5) | 0.0337 (7) | |
H13 | 0.3560 | 0.8079 | 0.4740 | 0.040* | |
C14 | 0.59693 (8) | 0.4870 (3) | 0.1253 (5) | 0.0342 (7) | |
H14A | 0.5924 | 0.3894 | 0.1294 | 0.041* | |
H14B | 0.6085 | 0.5122 | 0.2605 | 0.041* | |
C15 | 0.62001 (8) | 0.5196 (3) | −0.0679 (5) | 0.0332 (7) | |
H15A | 0.6415 | 0.4695 | −0.0540 | 0.040* | |
H15B | 0.6089 | 0.4909 | −0.2027 | 0.040* | |
C16 | 0.59437 (7) | 0.7386 (3) | −0.0990 (5) | 0.0311 (6) | |
H16A | 0.5830 | 0.7110 | −0.2337 | 0.037* | |
H16B | 0.5986 | 0.8364 | −0.1065 | 0.037* | |
C17 | 0.57131 (7) | 0.7078 (3) | 0.0934 (5) | 0.0320 (6) | |
H17A | 0.5823 | 0.7388 | 0.2275 | 0.038* | |
H17B | 0.5498 | 0.7570 | 0.0770 | 0.038* | |
C18 | 0.65041 (7) | 0.7011 (3) | −0.2577 (5) | 0.0341 (7) | |
H18A | 0.6544 | 0.7991 | −0.2567 | 0.041* | |
H18B | 0.6395 | 0.6779 | −0.3959 | 0.041* | |
C19 | 0.68447 (7) | 0.6275 (3) | −0.2412 (5) | 0.0310 (6) | |
C20 | 0.70492 (8) | 0.6439 (4) | −0.0521 (5) | 0.0333 (7) | |
H20 | 0.6987 | 0.7043 | 0.0590 | 0.040* | |
C21 | 0.73433 (7) | 0.5672 (4) | −0.0390 (4) | 0.0314 (6) | |
C22 | 0.78104 (9) | 0.4551 (4) | 0.0760 (6) | 0.0439 (8) | |
H22A | 0.7775 | 0.3806 | 0.1787 | 0.053* | |
H22B | 0.8048 | 0.4848 | 0.0872 | 0.053* | |
C23 | 0.74391 (7) | 0.4755 (3) | −0.2007 (5) | 0.0323 (7) | |
C24 | 0.72513 (8) | 0.4605 (4) | −0.3887 (5) | 0.0367 (7) | |
H24 | 0.7320 | 0.4014 | −0.4999 | 0.044* | |
C25 | 0.69508 (8) | 0.5383 (3) | −0.4056 (5) | 0.0325 (7) | |
H25 | 0.6817 | 0.5302 | −0.5314 | 0.039* | |
H0AA | 0.5513 (8) | 0.564 (4) | 0.426 (5) | 0.031 (9)* | |
H0AB | 0.5410 (9) | 0.429 (4) | 0.313 (6) | 0.040 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0476 (13) | 0.0446 (14) | 0.0352 (11) | 0.0079 (11) | 0.0122 (10) | 0.0003 (10) |
O2 | 0.0654 (17) | 0.0392 (15) | 0.0557 (16) | 0.0191 (12) | 0.0233 (13) | 0.0014 (12) |
O3 | 0.0382 (12) | 0.0574 (16) | 0.0399 (12) | 0.0129 (12) | −0.0079 (9) | −0.0052 (12) |
O4 | 0.0318 (12) | 0.0503 (14) | 0.0471 (14) | 0.0094 (10) | 0.0022 (10) | −0.0030 (11) |
N1 | 0.0285 (12) | 0.0389 (15) | 0.0275 (12) | −0.0058 (11) | −0.0001 (9) | 0.0010 (11) |
N2 | 0.0286 (12) | 0.0321 (13) | 0.0240 (11) | −0.0032 (10) | 0.0007 (9) | −0.0009 (10) |
N3 | 0.0267 (12) | 0.0288 (13) | 0.0361 (13) | −0.0029 (10) | −0.0018 (9) | 0.0050 (11) |
N4 | 0.0266 (12) | 0.0259 (13) | 0.0336 (13) | −0.0005 (10) | −0.0013 (9) | 0.0018 (10) |
C0AA | 0.0338 (16) | 0.0421 (19) | 0.0318 (15) | −0.0032 (14) | −0.0035 (12) | 0.0075 (14) |
C2 | 0.0345 (15) | 0.055 (2) | 0.0270 (14) | −0.0094 (15) | −0.0037 (12) | −0.0020 (15) |
C3 | 0.0354 (16) | 0.0444 (19) | 0.0290 (15) | −0.0069 (14) | 0.0037 (12) | −0.0073 (13) |
C4 | 0.0331 (15) | 0.0372 (16) | 0.0258 (13) | −0.0052 (13) | −0.0004 (11) | −0.0007 (13) |
C5 | 0.0332 (15) | 0.0394 (18) | 0.0280 (15) | −0.0034 (13) | 0.0005 (12) | −0.0041 (13) |
C6 | 0.0344 (16) | 0.0326 (16) | 0.0338 (15) | 0.0020 (13) | 0.0008 (12) | 0.0037 (13) |
C7 | 0.0280 (13) | 0.0308 (16) | 0.0282 (14) | 0.0000 (12) | −0.0032 (11) | −0.0020 (11) |
C8 | 0.0259 (14) | 0.0281 (16) | 0.0333 (15) | 0.0029 (11) | −0.0011 (11) | −0.0044 (11) |
C9 | 0.0304 (15) | 0.0276 (14) | 0.0333 (16) | −0.0002 (12) | −0.0040 (12) | 0.0019 (12) |
C10 | 0.0262 (13) | 0.0356 (16) | 0.0273 (13) | −0.0020 (12) | −0.0006 (11) | −0.0027 (12) |
C11 | 0.0441 (18) | 0.044 (2) | 0.0451 (19) | 0.0063 (16) | 0.0116 (15) | −0.0095 (16) |
C12 | 0.0326 (15) | 0.0330 (16) | 0.0337 (15) | 0.0053 (13) | −0.0020 (12) | −0.0068 (12) |
C13 | 0.0359 (15) | 0.0263 (15) | 0.0387 (16) | 0.0031 (13) | −0.0018 (13) | 0.0010 (13) |
C14 | 0.0326 (16) | 0.0265 (15) | 0.0435 (17) | −0.0010 (12) | −0.0020 (12) | 0.0064 (13) |
C15 | 0.0298 (15) | 0.0261 (15) | 0.0437 (17) | 0.0030 (12) | 0.0007 (13) | 0.0031 (13) |
C16 | 0.0299 (15) | 0.0245 (15) | 0.0389 (16) | 0.0005 (11) | −0.0055 (12) | 0.0038 (12) |
C17 | 0.0269 (14) | 0.0290 (16) | 0.0401 (16) | 0.0022 (12) | −0.0029 (12) | −0.0008 (13) |
C18 | 0.0313 (15) | 0.0340 (17) | 0.0369 (16) | −0.0019 (13) | −0.0020 (12) | 0.0048 (13) |
C19 | 0.0292 (14) | 0.0316 (15) | 0.0323 (15) | −0.0042 (12) | 0.0028 (11) | 0.0048 (12) |
C20 | 0.0321 (15) | 0.0352 (17) | 0.0325 (15) | 0.0010 (13) | 0.0024 (12) | −0.0015 (13) |
C21 | 0.0313 (14) | 0.0359 (16) | 0.0269 (14) | −0.0035 (13) | 0.0009 (11) | 0.0040 (13) |
C22 | 0.0359 (17) | 0.054 (2) | 0.0422 (19) | 0.0114 (16) | 0.0030 (14) | 0.0095 (16) |
C23 | 0.0260 (14) | 0.0335 (17) | 0.0374 (16) | −0.0005 (12) | 0.0064 (12) | 0.0051 (13) |
C24 | 0.0326 (16) | 0.0390 (17) | 0.0385 (17) | −0.0052 (13) | 0.0093 (13) | −0.0031 (14) |
C25 | 0.0305 (15) | 0.0373 (17) | 0.0298 (15) | −0.0070 (12) | −0.0001 (11) | 0.0036 (12) |
O1—C10 | 1.373 (3) | C7—C8 | 1.390 (4) |
O1—C11 | 1.428 (4) | C7—C13 | 1.406 (4) |
O2—C11 | 1.422 (4) | C8—H8 | 0.9300 |
O2—C12 | 1.377 (4) | C8—C9 | 1.397 (4) |
O3—C21 | 1.377 (3) | C9—H9 | 0.9300 |
O3—C22 | 1.427 (4) | C9—C10 | 1.369 (4) |
O4—C22 | 1.429 (4) | C10—C12 | 1.382 (5) |
O4—C23 | 1.374 (4) | C11—H11A | 0.9700 |
N1—C0AA | 1.447 (4) | C11—H11B | 0.9700 |
N1—C2 | 1.456 (4) | C12—C13 | 1.367 (4) |
N1—C5 | 1.462 (4) | C13—H13 | 0.9300 |
N2—C3 | 1.458 (4) | C14—H14A | 0.9700 |
N2—C4 | 1.457 (3) | C14—H14B | 0.9700 |
N2—C6 | 1.460 (4) | C14—C15 | 1.513 (4) |
N3—C0AA | 1.449 (4) | C15—H15A | 0.9700 |
N3—C14 | 1.460 (4) | C15—H15B | 0.9700 |
N3—C17 | 1.459 (4) | C16—H16A | 0.9700 |
N4—C15 | 1.455 (4) | C16—H16B | 0.9700 |
N4—C16 | 1.464 (4) | C16—C17 | 1.505 (4) |
N4—C18 | 1.462 (4) | C17—H17A | 0.9700 |
C0AA—H0AA | 0.93 (3) | C17—H17B | 0.9700 |
C0AA—H0AB | 0.99 (4) | C18—H18A | 0.9700 |
C2—H2A | 0.9700 | C18—H18B | 0.9700 |
C2—H2B | 0.9700 | C18—C19 | 1.508 (4) |
C2—C3 | 1.512 (4) | C19—C20 | 1.409 (4) |
C3—H3A | 0.9700 | C19—C25 | 1.390 (4) |
C3—H3B | 0.9700 | C20—H20 | 0.9300 |
C4—H4A | 0.9700 | C20—C21 | 1.367 (5) |
C4—H4B | 0.9700 | C21—C23 | 1.382 (4) |
C4—C5 | 1.515 (4) | C22—H22A | 0.9700 |
C5—H5A | 0.9700 | C22—H22B | 0.9700 |
C5—H5B | 0.9700 | C23—C24 | 1.366 (5) |
C6—H6A | 0.9700 | C24—H24 | 0.9300 |
C6—H6B | 0.9700 | C24—C25 | 1.396 (5) |
C6—C7 | 1.512 (4) | C25—H25 | 0.9300 |
C10—O1—C11 | 105.5 (3) | O1—C11—H11B | 109.9 |
C12—O2—C11 | 105.8 (3) | O2—C11—O1 | 108.8 (2) |
C21—O3—C22 | 105.4 (3) | O2—C11—H11A | 109.9 |
C23—O4—C22 | 105.2 (2) | O2—C11—H11B | 109.9 |
C0AA—N1—C2 | 111.8 (2) | H11A—C11—H11B | 108.3 |
C0AA—N1—C5 | 111.4 (3) | O2—C12—C10 | 109.7 (3) |
C2—N1—C5 | 109.8 (2) | C13—C12—O2 | 128.0 (3) |
C3—N2—C6 | 111.1 (2) | C13—C12—C10 | 122.4 (3) |
C4—N2—C3 | 108.9 (2) | C7—C13—H13 | 121.2 |
C4—N2—C6 | 111.9 (2) | C12—C13—C7 | 117.5 (3) |
C0AA—N3—C14 | 110.1 (2) | C12—C13—H13 | 121.2 |
C0AA—N3—C17 | 111.3 (3) | N3—C14—H14A | 109.5 |
C14—N3—C17 | 109.4 (2) | N3—C14—H14B | 109.5 |
C15—N4—C16 | 108.3 (2) | N3—C14—C15 | 110.6 (3) |
C15—N4—C18 | 112.3 (3) | H14A—C14—H14B | 108.1 |
C16—N4—C18 | 110.7 (2) | C15—C14—H14A | 109.5 |
N1—C0AA—N3 | 111.8 (3) | C15—C14—H14B | 109.5 |
N1—C0AA—H0AA | 106 (2) | N4—C15—C14 | 110.5 (3) |
N1—C0AA—H0AB | 110 (2) | N4—C15—H15A | 109.5 |
N3—C0AA—H0AA | 113 (2) | N4—C15—H15B | 109.5 |
N3—C0AA—H0AB | 109 (2) | C14—C15—H15A | 109.5 |
H0AA—C0AA—H0AB | 106 (3) | C14—C15—H15B | 109.5 |
N1—C2—H2A | 109.7 | H15A—C15—H15B | 108.1 |
N1—C2—H2B | 109.7 | N4—C16—H16A | 109.6 |
N1—C2—C3 | 110.0 (3) | N4—C16—H16B | 109.6 |
H2A—C2—H2B | 108.2 | N4—C16—C17 | 110.5 (2) |
C3—C2—H2A | 109.7 | H16A—C16—H16B | 108.1 |
C3—C2—H2B | 109.7 | C17—C16—H16A | 109.6 |
N2—C3—C2 | 110.4 (3) | C17—C16—H16B | 109.6 |
N2—C3—H3A | 109.6 | N3—C17—C16 | 110.7 (2) |
N2—C3—H3B | 109.6 | N3—C17—H17A | 109.5 |
C2—C3—H3A | 109.6 | N3—C17—H17B | 109.5 |
C2—C3—H3B | 109.6 | C16—C17—H17A | 109.5 |
H3A—C3—H3B | 108.1 | C16—C17—H17B | 109.5 |
N2—C4—H4A | 109.6 | H17A—C17—H17B | 108.1 |
N2—C4—H4B | 109.6 | N4—C18—H18A | 109.2 |
N2—C4—C5 | 110.3 (2) | N4—C18—H18B | 109.2 |
H4A—C4—H4B | 108.1 | N4—C18—C19 | 112.2 (2) |
C5—C4—H4A | 109.6 | H18A—C18—H18B | 107.9 |
C5—C4—H4B | 109.6 | C19—C18—H18A | 109.2 |
N1—C5—C4 | 110.1 (3) | C19—C18—H18B | 109.2 |
N1—C5—H5A | 109.6 | C20—C19—C18 | 119.6 (3) |
N1—C5—H5B | 109.6 | C25—C19—C18 | 120.7 (3) |
C4—C5—H5A | 109.6 | C25—C19—C20 | 119.6 (3) |
C4—C5—H5B | 109.6 | C19—C20—H20 | 121.5 |
H5A—C5—H5B | 108.2 | C21—C20—C19 | 117.1 (3) |
N2—C6—H6A | 109.1 | C21—C20—H20 | 121.5 |
N2—C6—H6B | 109.1 | O3—C21—C23 | 109.5 (3) |
N2—C6—C7 | 112.4 (2) | C20—C21—O3 | 127.9 (3) |
H6A—C6—H6B | 107.9 | C20—C21—C23 | 122.6 (3) |
C7—C6—H6A | 109.1 | O3—C22—O4 | 108.4 (3) |
C7—C6—H6B | 109.1 | O3—C22—H22A | 110.0 |
C8—C7—C6 | 120.7 (3) | O3—C22—H22B | 110.0 |
C8—C7—C13 | 119.4 (3) | O4—C22—H22A | 110.0 |
C13—C7—C6 | 119.9 (3) | O4—C22—H22B | 110.0 |
C7—C8—H8 | 118.7 | H22A—C22—H22B | 108.4 |
C7—C8—C9 | 122.5 (3) | O4—C23—C21 | 110.2 (3) |
C9—C8—H8 | 118.7 | C24—C23—O4 | 128.2 (3) |
C8—C9—H9 | 121.7 | C24—C23—C21 | 121.6 (3) |
C10—C9—C8 | 116.6 (3) | C23—C24—H24 | 121.6 |
C10—C9—H9 | 121.7 | C23—C24—C25 | 116.7 (3) |
O1—C10—C12 | 110.2 (3) | C25—C24—H24 | 121.6 |
C9—C10—O1 | 128.2 (3) | C19—C25—C24 | 122.4 (3) |
C9—C10—C12 | 121.6 (3) | C19—C25—H25 | 118.8 |
O1—C11—H11A | 109.9 | C24—C25—H25 | 118.8 |
O1—C10—C12—O2 | −0.7 (4) | C9—C10—C12—C13 | −0.8 (5) |
O1—C10—C12—C13 | 179.1 (3) | C10—O1—C11—O2 | 0.5 (3) |
O2—C12—C13—C7 | 179.6 (3) | C10—C12—C13—C7 | −0.1 (4) |
O3—C21—C23—O4 | 1.5 (4) | C11—O1—C10—C9 | 179.9 (3) |
O3—C21—C23—C24 | −177.3 (3) | C11—O1—C10—C12 | 0.1 (3) |
O4—C23—C24—C25 | 179.0 (3) | C11—O2—C12—C10 | 1.0 (4) |
N1—C2—C3—N2 | 59.5 (4) | C11—O2—C12—C13 | −178.8 (3) |
N2—C4—C5—N1 | −59.0 (3) | C12—O2—C11—O1 | −0.9 (4) |
N2—C6—C7—C8 | −42.1 (4) | C13—C7—C8—C9 | 0.1 (4) |
N2—C6—C7—C13 | 140.0 (3) | C14—N3—C0AA—N1 | −173.1 (3) |
N3—C14—C15—N4 | 59.2 (3) | C14—N3—C17—C16 | 57.2 (3) |
N4—C16—C17—N3 | −59.4 (3) | C15—N4—C16—C17 | 59.5 (3) |
N4—C18—C19—C20 | −58.0 (4) | C15—N4—C18—C19 | −58.6 (3) |
N4—C18—C19—C25 | 118.7 (3) | C16—N4—C15—C14 | −59.4 (3) |
C0AA—N1—C2—C3 | 177.7 (3) | C16—N4—C18—C19 | −179.8 (3) |
C0AA—N1—C5—C4 | −177.6 (3) | C17—N3—C0AA—N1 | 65.3 (3) |
C0AA—N3—C14—C15 | −179.6 (3) | C17—N3—C14—C15 | −56.9 (3) |
C0AA—N3—C17—C16 | 179.1 (2) | C18—N4—C15—C14 | 178.0 (2) |
C2—N1—C0AA—N3 | −164.6 (3) | C18—N4—C16—C17 | −176.9 (2) |
C2—N1—C5—C4 | 58.0 (3) | C18—C19—C20—C21 | 175.4 (3) |
C3—N2—C4—C5 | 59.2 (3) | C18—C19—C25—C24 | −175.0 (3) |
C3—N2—C6—C7 | −69.1 (3) | C19—C20—C21—O3 | 179.3 (3) |
C4—N2—C3—C2 | −59.5 (3) | C19—C20—C21—C23 | −0.8 (5) |
C4—N2—C6—C7 | 169.0 (3) | C20—C19—C25—C24 | 1.7 (5) |
C5—N1—C0AA—N3 | 72.2 (3) | C20—C21—C23—O4 | −178.4 (3) |
C5—N1—C2—C3 | −58.2 (4) | C20—C21—C23—C24 | 2.9 (5) |
C6—N2—C3—C2 | 176.9 (2) | C21—O3—C22—O4 | 11.6 (4) |
C6—N2—C4—C5 | −177.7 (3) | C21—C23—C24—C25 | −2.5 (5) |
C6—C7—C8—C9 | −177.8 (3) | C22—O3—C21—C20 | 171.8 (3) |
C6—C7—C13—C12 | 178.3 (3) | C22—O3—C21—C23 | −8.1 (3) |
C7—C8—C9—C10 | −0.9 (4) | C22—O4—C23—C21 | 5.7 (4) |
C8—C7—C13—C12 | 0.4 (4) | C22—O4—C23—C24 | −175.6 (3) |
C8—C9—C10—O1 | −178.6 (3) | C23—O4—C22—O3 | −10.7 (4) |
C8—C9—C10—C12 | 1.2 (4) | C23—C24—C25—C19 | 0.2 (5) |
C9—C10—C12—O2 | 179.4 (3) | C25—C19—C20—C21 | −1.4 (4) |
Experimental details
Crystal data | |
Chemical formula | C25H32N4O4 |
Mr | 452.55 |
Crystal system, space group | Orthorhombic, Pn21a |
Temperature (K) | 173 |
a, b, c (Å) | 38.8025 (10), 9.7675 (2), 6.09571 (13) |
V (Å3) | 2310.29 (10) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.72 |
Crystal size (mm) | 0.38 × 0.21 × 0.11 |
Data collection | |
Diffractometer | Agilent Xcalibur (Eos, Gemini) diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO and CrysAlis RED; Agilent, 2012) |
Tmin, Tmax | 0.836, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13559, 4199, 3869 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.619 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.108, 1.02 |
No. of reflections | 4199 |
No. of parameters | 307 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.17 |
Absolute structure | Flack parameter determined using 1513 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons & Flack, 2004) |
Absolute structure parameter | −0.03 (15) |
Computer programs: CrysAlis PRO (Agilent, 2012), CrysAlis RED (Agilent, 2012), SUPERFLIP (Palatinus & Chapuis, 2007), SHELXL2012 (Sheldrick, 2008), OLEX2 (Dolomanov et al., 2009).
Acknowledgements
CNK thanks the University of Mysore for research facilities and is also grateful to the Principal, Maharani's Science College for Women in Mysore, for giving permission to do research. JPJ acknowledges the NSF–MRI program (grant No. CHE-1039027) for funds to purchase the X-ray diffractometer.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
1-(3,4-Methylenedioxybenzyl)piperazine or 1-piperonylpiperazine is a psychoactive drug of the piperazine class and is used to synthesise the drug, piribedil, an antiparkinsonian agent (Millan et al., 2001). The piperazine moiety is extensively employed to construct various bioactive molecules with anti-bacterial, antimalarial activity and as antipsychotic agents (Choudhary et al., 2006). A valuable insight into recent advances on antimicrobial activity of piperazine derivatives is reported (Kharb et al., 2012). Piperazines are among the most important building blocks in today's drug discovery and are found in biologically active compounds across a number of different therapeutic areas (Brockunier et al., 2004; Bogatcheva et al., 2006). A review on the current pharmacological and toxicological information for piperazine derivatives is described (Elliott, 2011). The crystal structure of N-piperonyl analogue of the atypical antipsychotic clozapine (Capuano et al., 2000) is reported. In view of the above importance of piperonyl piperazines, this paper reports the crystal structure of the title compound, (I), C25H32N4O4, an unexpected product obtained during crystallization.
The title compound, (I), C25H32N4O4, crystallizes with one independent molecule in the asymmetric unit (Fig. 1). In the molecule, both piperazine rings adopt chair conformations (puckering parameters (N1/C2/C3/N2/C4/C5) Q, θ, and ϕ = 0.590 (3)Å, 0.0 (3)° and 173 (23)°; (N3/C14/C15/N4/C16/C17) Q, θ, and ϕ = 0.586 (3)Å, 0.7 (3)° and 182 (10)°,respectively (Cremer & Pople, 1975). One of the two five-membered dioxolane rings is planar while the other is in a slightly disordered envelope conformation (ϕ = 331.0 (18)°) where the mean plane of the dioxolane ring is twisted by 3.6 (1)° from that of the benzene ring. The dihedral angle between the mean planes of the two benzene rings is 69.9 (5)°. No classical hydrogen bonds were observed.