organic compounds
Butane-1,4-diyl bis(benzenecarbodithioate)
aDepartment of Applied Chemistry and Biotechnology, Chiba University, 1-33, Yayoi-cho, Inage-ku, Chiba 263-8522, Japan
*Correspondence e-mail: sasanuma@faculty.chiba-u.jp
The title compound, C18H18S4, which lies on an inversion center, adopts a trans–gauche+–trans–gauche−–trans (tg+tg−t) conformation of the S—CH2—CH2—CH2—CH2—S bond sequence. In the crystal, a π–π interaction with a centroid–centroid distance of 3.8797 (16) Å is observed.
CCDC reference: 965321
Related literature
For crystal structures and conformations of C6H5C(=S)S(CH2)2SC(=S)C6H5 and C6H5C(=O)S(CH2)4SC(=O)C6H5, see: Abe et al. (2011, 2013). For related compounds, see: Sawanobori et al. (2001); Sasanuma et al. (2002). For the synthesis of piperidinium dithiobenzoate, see: Kato et al. (1973).
Experimental
Crystal data
|
Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL.
Supporting information
CCDC reference: 965321
10.1107/S1600536813027529/is5312sup1.cif
contains datablock I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813027529/is5312Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813027529/is5312Isup3.cml
Piperidinium dithiobenzoate (1.26 g, 5.3 mmol) was prepared according to the literature (Kato et al., 1973). Dibromobutane (0.54 g, 2.5 mmol) was added dropwise into piperidinium dithiobenzoate dissolved in dimethylformamide (DMF, 15 ml) and then stirred for 8 h under nitrogen atmosphere. The reaction mixture was diluted with a mixture of ethyl acetate and n-hexane (1:4 in volume) and washed thrice with water, and the organic layer was dried overnight over anhydrous magnesium sulfate. The solution was condensed, dissolved in a toluene/n-hexane mixture (1:2 in volume), and fractionated by silica-gel
(Rf = 0.3–0.5). The collected fractions were condensed and recrystallized from a methanol/n-hexane mixture (1:1 in volume) to yield 4DBS4 (0.37 g, 41%).The product was dissolved in chloroform in an open vessel. The vessel was placed in a larger one containing n-hexane, a poor solvent for 4DBS4, to facilitate precipitation of crystals by vapor diffusion of n-hexane into the chloroform solution.
All C—H hydrogen atoms were geometrically positioned with C—H = 0.95 and 0.99 Å for the aromatic and methylene groups, respectively, and refined as riding by Uiso(H) = 1.2 Ueq(C).
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C18H18S4 | F(000) = 380 |
Mr = 362.56 | Dx = 1.425 Mg m−3 |
Monoclinic, P21/n | Melting point: 341 K |
Hall symbol: -P 2yn | Cu Kα radiation, λ = 1.54178 Å |
a = 11.0205 (6) Å | Cell parameters from 5003 reflections |
b = 7.2535 (5) Å | θ = 4.8–67.8° |
c = 11.3090 (7) Å | µ = 5.09 mm−1 |
β = 110.805 (2)° | T = 173 K |
V = 845.06 (9) Å3 | Plate, pink |
Z = 2 | 0.40 × 0.20 × 0.01 mm |
Bruker APEXII CCD area-detector diffractometer | 1480 independent reflections |
Radiation source: Bruker TXS fine-focus rotating anode | 1468 reflections with I > 2σ(I) |
Bruker Helios multilayer confocal mirror monochromator | Rint = 0.028 |
Detector resolution: 8.333 pixels mm-1 | θmax = 68.1°, θmin = 4.8° |
ϕ and ω scans | h = −13→13 |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | k = −8→7 |
Tmin = 0.235, Tmax = 0.951 | l = −13→13 |
4872 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.13 | w = 1/[σ2(Fo2) + (0.0393P)2 + 1.0478P] where P = (Fo2 + 2Fc2)/3 |
1480 reflections | (Δ/σ)max < 0.001 |
100 parameters | Δρmax = 0.35 e Å−3 |
0 restraints | Δρmin = −0.31 e Å−3 |
C18H18S4 | V = 845.06 (9) Å3 |
Mr = 362.56 | Z = 2 |
Monoclinic, P21/n | Cu Kα radiation |
a = 11.0205 (6) Å | µ = 5.09 mm−1 |
b = 7.2535 (5) Å | T = 173 K |
c = 11.3090 (7) Å | 0.40 × 0.20 × 0.01 mm |
β = 110.805 (2)° |
Bruker APEXII CCD area-detector diffractometer | 1480 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 1468 reflections with I > 2σ(I) |
Tmin = 0.235, Tmax = 0.951 | Rint = 0.028 |
4872 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.13 | Δρmax = 0.35 e Å−3 |
1480 reflections | Δρmin = −0.31 e Å−3 |
100 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | −0.0082 (2) | 0.2157 (3) | 0.3798 (2) | 0.0226 (5) | |
C2 | 0.0225 (2) | 0.2350 (4) | 0.5097 (2) | 0.0271 (5) | |
H2 | 0.1068 | 0.2029 | 0.5658 | 0.033* | |
C3 | −0.0686 (2) | 0.3004 (4) | 0.5579 (2) | 0.0309 (5) | |
H3 | −0.0463 | 0.3138 | 0.6467 | 0.037* | |
C4 | −0.1921 (2) | 0.3461 (4) | 0.4770 (3) | 0.0314 (6) | |
H4 | −0.2547 | 0.3904 | 0.5100 | 0.038* | |
C5 | −0.2237 (2) | 0.3270 (4) | 0.3480 (3) | 0.0347 (6) | |
H5 | −0.3085 | 0.3581 | 0.2923 | 0.042* | |
C6 | −0.1329 (2) | 0.2628 (4) | 0.2992 (2) | 0.0300 (5) | |
H6 | −0.1556 | 0.2508 | 0.2103 | 0.036* | |
C7 | 0.0885 (2) | 0.1450 (3) | 0.3270 (2) | 0.0222 (5) | |
C8 | 0.3424 (2) | 0.0498 (4) | 0.3534 (2) | 0.0288 (5) | |
H8A | 0.3123 | −0.0796 | 0.3375 | 0.035* | |
H8B | 0.3313 | 0.1080 | 0.2710 | 0.035* | |
C9 | 0.4854 (2) | 0.0543 (4) | 0.4385 (2) | 0.0270 (5) | |
H9A | 0.5121 | 0.1841 | 0.4594 | 0.032* | |
H9B | 0.5381 | 0.0031 | 0.3913 | 0.032* | |
S1 | 0.04887 (5) | 0.05242 (9) | 0.18505 (5) | 0.0286 (2) | |
S2 | 0.24732 (5) | 0.17228 (9) | 0.42927 (5) | 0.0278 (2) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0177 (10) | 0.0217 (12) | 0.0276 (11) | −0.0011 (9) | 0.0072 (9) | 0.0005 (9) |
C2 | 0.0197 (11) | 0.0330 (13) | 0.0271 (11) | 0.0003 (10) | 0.0064 (9) | 0.0023 (10) |
C3 | 0.0304 (12) | 0.0364 (14) | 0.0286 (12) | −0.0004 (11) | 0.0136 (10) | −0.0013 (11) |
C4 | 0.0255 (12) | 0.0310 (14) | 0.0429 (14) | 0.0014 (10) | 0.0186 (11) | −0.0034 (11) |
C5 | 0.0189 (11) | 0.0430 (16) | 0.0389 (14) | 0.0067 (11) | 0.0063 (10) | −0.0015 (12) |
C6 | 0.0210 (11) | 0.0391 (15) | 0.0269 (11) | 0.0026 (10) | 0.0047 (9) | −0.0026 (10) |
C7 | 0.0169 (10) | 0.0228 (12) | 0.0255 (11) | 0.0010 (8) | 0.0058 (8) | 0.0044 (9) |
C8 | 0.0178 (11) | 0.0406 (15) | 0.0283 (11) | 0.0071 (10) | 0.0087 (9) | −0.0003 (10) |
C9 | 0.0172 (11) | 0.0335 (14) | 0.0312 (12) | 0.0040 (9) | 0.0097 (9) | 0.0022 (10) |
S1 | 0.0211 (3) | 0.0387 (4) | 0.0246 (3) | −0.0006 (2) | 0.0062 (2) | −0.0052 (2) |
S2 | 0.0143 (3) | 0.0394 (4) | 0.0271 (3) | 0.0035 (2) | 0.0040 (2) | −0.0065 (2) |
C1—C2 | 1.392 (3) | C6—H6 | 0.9500 |
C1—C6 | 1.395 (3) | C7—S1 | 1.649 (2) |
C1—C7 | 1.487 (3) | C7—S2 | 1.732 (2) |
C2—C3 | 1.386 (4) | C8—C9 | 1.527 (3) |
C2—H2 | 0.9500 | C8—S2 | 1.807 (2) |
C3—C4 | 1.383 (4) | C8—H8A | 0.9900 |
C3—H3 | 0.9500 | C8—H8B | 0.9900 |
C4—C5 | 1.381 (4) | C9—C9i | 1.530 (5) |
C4—H4 | 0.9500 | C9—H9A | 0.9900 |
C5—C6 | 1.384 (3) | C9—H9B | 0.9900 |
C5—H5 | 0.9500 | ||
C2—C1—C6 | 118.6 (2) | C1—C6—H6 | 119.8 |
C2—C1—C7 | 121.2 (2) | C1—C7—S1 | 123.48 (16) |
C6—C1—C7 | 120.2 (2) | C1—C7—S2 | 113.01 (16) |
C3—C2—C1 | 120.7 (2) | S1—C7—S2 | 123.51 (13) |
C3—C2—H2 | 119.6 | C9—C8—S2 | 109.43 (16) |
C1—C2—H2 | 119.6 | C9—C8—H8A | 109.8 |
C4—C3—C2 | 120.1 (2) | S2—C8—H8A | 109.8 |
C4—C3—H3 | 120.0 | C9—C8—H8B | 109.8 |
C2—C3—H3 | 120.0 | S2—C8—H8B | 109.8 |
C5—C4—C3 | 119.6 (2) | H8A—C8—H8B | 108.2 |
C5—C4—H4 | 120.2 | C8—C9—C9i | 113.5 (2) |
C3—C4—H4 | 120.2 | C8—C9—H9A | 108.9 |
C4—C5—C6 | 120.5 (2) | C9i—C9—H9A | 108.9 |
C4—C5—H5 | 119.7 | C8—C9—H9B | 108.9 |
C6—C5—H5 | 119.7 | C9i—C9—H9B | 108.9 |
C5—C6—C1 | 120.4 (2) | H9A—C9—H9B | 107.7 |
C5—C6—H6 | 119.8 | C7—S2—C8 | 104.20 (11) |
C6—C1—C2—C3 | −0.3 (4) | C2—C1—C7—S1 | 158.30 (19) |
C7—C1—C2—C3 | −179.8 (2) | C6—C1—C7—S1 | −21.2 (3) |
C1—C2—C3—C4 | 0.5 (4) | C2—C1—C7—S2 | −22.3 (3) |
C2—C3—C4—C5 | −0.3 (4) | C6—C1—C7—S2 | 158.2 (2) |
C3—C4—C5—C6 | −0.1 (4) | S2—C8—C9—C9i | 66.7 (3) |
C4—C5—C6—C1 | 0.3 (4) | C1—C7—S2—C8 | 172.54 (17) |
C2—C1—C6—C5 | −0.1 (4) | S1—C7—S2—C8 | −8.11 (19) |
C7—C1—C6—C5 | 179.4 (2) | C9—C8—S2—C7 | −176.88 (17) |
Symmetry code: (i) −x+1, −y, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C18H18S4 |
Mr | 362.56 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 173 |
a, b, c (Å) | 11.0205 (6), 7.2535 (5), 11.3090 (7) |
β (°) | 110.805 (2) |
V (Å3) | 845.06 (9) |
Z | 2 |
Radiation type | Cu Kα |
µ (mm−1) | 5.09 |
Crystal size (mm) | 0.40 × 0.20 × 0.01 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.235, 0.951 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4872, 1480, 1468 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.100, 1.13 |
No. of reflections | 1480 |
No. of parameters | 100 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.35, −0.31 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and Mercury (Macrae et al., 2006), SHELXTL (Sheldrick, 2008).
Acknowledgements
We thank Dr Masu and Dr Yagishita of the Center for Analytical Instrumentation, Chiba University, for helpful advice about the X-ray diffraction measurements. This study was partly supported by a Grant-in-Aid for Scientific Research (C) (22550190) from the Japan Society for the Promotion of Science.
References
Abe, D., Sasanuma, Y. & Sato, H. (2011). Acta Cryst. E67, o961. Web of Science CSD CrossRef IUCr Journals Google Scholar
Abe, D. & Sasanuma, Y. (2013). Acta Cryst. E69, o1612. CSD CrossRef IUCr Journals Google Scholar
Bruker (2001). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2007). APEX2. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Kato, S., Mitani, T. & Mizuta, M. (1973). Int. J. Sulfur Chem. 8, 359–366. CAS Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sasanuma, Y., Ohta, H., Touma, I., Matoba, H., Hayashi, Y. & Kaito, A. (2001). Macromolecules, 35, 3748–3761. Web of Science CrossRef Google Scholar
Sawanobori, M., Sasanuma, Y. & Kaito, A. (2001). Macromolecules, 34, 8321–8329. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The aromatic polyesters, [–O(CH2)nO(C=O)C6H4(C=O)-]x (n = 2– 4), have been mass-produced and used as fibers, films, bottles, and engineering plastics. In a series of our studies, we have investigated conformational characteristics and configurational properties of their analogs, [–X(CH2)nX(C=Y)C6H4(C=Y)-]x, that is, polythioesters (X = S, Y = O, abbreviated herein as PnTS2) and polydithioesters (X = Y = S, PnTS4). As model compounds of PnTS2 and PnTS4, we have adopted oligomethylenedithiobenzoate (nDBS2) and oligomethylenetetrathiobenzoate (nDBS4), respectively. This paper describes synthesis and X-ray diffraction analysis of one of them, 4DBS4.
Figure 1 shows the molecular structure of 4DBS4. The S—CH2—CH2—CH2—CH2—S bonds lie in the trans– gauche+–trans–gauche-–trans (tg+tg-t) conformation. On the other hand, 4DBS2, a model of P4TS2, crystallizes to form the g+tttg- conformation (Abe & Sasanuma, 2013). In general, the S—CH2 single bond prefers the gauche state (Sawanobori et al., 2001; Sasanuma et al., 2002). For instance, the crystalline 2DBS4 molecule adopts the g+tg- conformation in the S—CH2–CH2—S linkage (Abe et al., 2011). By contraries, the two S—CH2 bonds of 4DBS4 were found here to be in the trans conformation. Our molecular orbital calculations at the MP2/6–311+G(2 d,p)//B3LYP/6–311+G(2 d,p) level for gaseous 4DBS4 yielded free energies (relative to the all-trans state) of the two conformers: 0.49 kcal mol-1 (tg+tg-t) and -0.86 kcal mol-1 (g+tttg-). Therefore, 4DBS4 is not allowed to crystallize in the most stable conformation.
In differential scanning calorimetric measurements, a 4DBS4 sample, which was recrystallized from methanol, exhibited only one endothermic peak at 68 °C on heating, whereas its melt-crystallized sample showed two endothermic peaks at 48 and 68 °C. The former and latter samples yielded powder X-ray diffraction patterns different from each other.
Interestingly, nDBS4's (n = 2, 3, 4, and 5) show odd-even effects in melting; 2DBS4 and 4DBS4, respectively, melt at 109 and 68 °C, whereas 3DBS4 and 5DBS4 are liquid at room temperature but exhibit grass transitions at -51 °C (n = 3) and -54 °C (n = 5).