metal-organic compounds
Bis(5-amino-1H-tetrazole-κN4)diaqua(oxalato-κ2O1,O2)cadmium
aJinshan College of Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, People's Republic of China, and bCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian 350002, People's Republic of China
*Correspondence e-mail: lqfafu@163.com
In the monomeric title complex, [Cd(C2O4)(CH3N5)2(H2O)2], the CdII ion exhibits a distorted octahedral coordination geometry, with the equatorial plane defined by two O atoms from an oxalate ligand and two N atoms from two 5-amino-1H-tetrazole ligands; the axial sites are occupied by two water molecules, with longer Cd—O bond lengths. An intramolecular N—H⋯O hydrogen bond occurs. In the crystal, N—H⋯O as well as O—H⋯O and O—H⋯N hydrogen bonds (some of which are bifurcated) link the complex molecules into a three-dimensional network.
CCDC reference: 969919
Related literature
For background to five-membered heterocycle ligands in compounds with metal-organic framework structures, see: Wang et al. (2010); Yu et al. (2010); He et al. (2006); Wei et al. (2010). For related complexes with mixed ligands, see: Zhai et al. (2007); García-Couceiro et al. (2005); Prasad et al. (2002).
Experimental
Crystal data
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Data collection: CrystalClear (Rigaku, 2002); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
CCDC reference: 969919
10.1107/S1600536813030158/bh2488sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813030158/bh2488Isup2.hkl
The title compound was prepared by reaction of 5-amino-tetrazole (0.0425 g, 0.5 mmol), oxalate salt (0.0450 g, 0.5 mmol) and 3CdSO4.8H2O (0.128 g, 0.167 mmol) in water (5 mL). The pH of the mixture was carefully adjusted to 3.50. The solution was stirred for 8 h at 298 K, then filtered, and evaporated in air. Colorless crystals were obtained after 3 weeks.
H atoms bonded to N atoms were refined in idealized positions using the riding-model approximation, with N—H distances of 0.86 Å and Uiso(H) =1.2Ueq(N). H atoms bonded to O atoms were located in difference maps and treated as riding atoms, with a DFIX restraint for bond lengths: O—H = 0.84 (1) Å.
Data collection: CrystalClear (Rigaku, 2002); cell
CrystalClear (Rigaku, 2002); data reduction: CrystalClear (Rigaku, 2002); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the title complex showing 30% probability displacement ellipsoids. H atoms are shown as spheres of arbitrary radii. | |
Fig. 2. Three-dimensional architecture constructed by hydrogen bonding interactions (dashed lines). |
[Cd(C2O4)(CH3N5)2(H2O)2] | F(000) = 1600 |
Mr = 406.62 | Dx = 2.228 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 25 reflections |
a = 12.537 (3) Å | θ = 12–18° |
b = 6.6745 (13) Å | µ = 1.86 mm−1 |
c = 28.975 (6) Å | T = 298 K |
V = 2424.6 (8) Å3 | Parallelepiped, colourless |
Z = 8 | 0.28 × 0.16 × 0.12 mm |
Rigaku Saturn 724 CCD area-detector diffractometer | 2785 independent reflections |
Radiation source: fine-focus sealed tube | 2754 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
scintillation counter scans | θmax = 27.5°, θmin = 3.3° |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002) | h = −16→16 |
Tmin = 0.766, Tmax = 0.862 | k = −8→8 |
17764 measured reflections | l = −31→37 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.079 | w = 1/[σ2(Fo2) + (0.0398P)2 + 4.5635P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.002 |
2785 reflections | Δρmax = 0.59 e Å−3 |
207 parameters | Δρmin = −0.45 e Å−3 |
6 restraints | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 constraints | Extinction coefficient: 0.0021 (2) |
Primary atom site location: structure-invariant direct methods |
[Cd(C2O4)(CH3N5)2(H2O)2] | V = 2424.6 (8) Å3 |
Mr = 406.62 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 12.537 (3) Å | µ = 1.86 mm−1 |
b = 6.6745 (13) Å | T = 298 K |
c = 28.975 (6) Å | 0.28 × 0.16 × 0.12 mm |
Rigaku Saturn 724 CCD area-detector diffractometer | 2785 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002) | 2754 reflections with I > 2σ(I) |
Tmin = 0.766, Tmax = 0.862 | Rint = 0.040 |
17764 measured reflections |
R[F2 > 2σ(F2)] = 0.029 | 6 restraints |
wR(F2) = 0.079 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.59 e Å−3 |
2785 reflections | Δρmin = −0.45 e Å−3 |
207 parameters |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.032292 (15) | 0.08331 (3) | 0.378971 (7) | 0.02283 (10) | |
O1 | −0.09336 (15) | −0.0416 (3) | 0.32754 (7) | 0.0282 (4) | |
O2 | −0.12553 (16) | 0.0700 (3) | 0.41712 (7) | 0.0288 (4) | |
O3 | −0.26641 (16) | −0.1150 (3) | 0.32234 (7) | 0.0290 (4) | |
O4 | −0.30105 (16) | 0.0484 (3) | 0.40574 (7) | 0.0317 (5) | |
O5 | 0.07474 (16) | −0.2449 (3) | 0.39948 (7) | 0.0287 (4) | |
O6 | −0.02085 (18) | 0.4282 (3) | 0.35582 (9) | 0.0328 (5) | |
N1 | −0.0171 (2) | 0.2487 (5) | 0.49906 (10) | 0.0371 (6) | |
H1 | −0.0681 | 0.2134 | 0.4809 | 0.045* | |
H2 | −0.0304 | 0.2771 | 0.5274 | 0.045* | |
N2 | 0.16782 (18) | 0.3183 (4) | 0.50717 (8) | 0.0262 (5) | |
H3 | 0.1682 | 0.3523 | 0.5358 | 0.031* | |
N3 | 0.25337 (19) | 0.3158 (4) | 0.47909 (8) | 0.0302 (5) | |
N4 | 0.22134 (18) | 0.2577 (4) | 0.43946 (8) | 0.0296 (5) | |
N5 | 0.11400 (17) | 0.2195 (4) | 0.44031 (8) | 0.0237 (5) | |
N6 | 0.0384 (2) | 0.2250 (5) | 0.25808 (11) | 0.0401 (7) | |
H5 | −0.0196 | 0.2050 | 0.2732 | 0.048* | |
H6 | 0.0358 | 0.2705 | 0.2303 | 0.048* | |
N7 | 0.14922 (19) | 0.1147 (4) | 0.32024 (8) | 0.0252 (5) | |
N8 | 0.2576 (2) | 0.1030 (4) | 0.32585 (9) | 0.0283 (5) | |
N9 | 0.3050 (2) | 0.1641 (4) | 0.28931 (9) | 0.0305 (5) | |
N10 | 0.22867 (19) | 0.2148 (4) | 0.25854 (8) | 0.0276 (5) | |
H4 | 0.2397 | 0.2589 | 0.2311 | 0.033* | |
C1 | 0.0822 (2) | 0.2592 (4) | 0.48324 (9) | 0.0231 (5) | |
C2 | 0.1335 (2) | 0.1851 (4) | 0.27786 (9) | 0.0236 (5) | |
C3 | −0.1872 (2) | −0.0488 (4) | 0.34327 (9) | 0.0218 (5) | |
C4 | −0.2064 (2) | 0.0313 (4) | 0.39325 (9) | 0.0224 (5) | |
H6B | −0.025 (3) | 0.438 (7) | 0.32696 (16) | 0.066 (17)* | |
H5A | 0.1389 (11) | −0.273 (6) | 0.4045 (16) | 0.072 (15)* | |
H5B | 0.053 (3) | −0.340 (5) | 0.3828 (14) | 0.070 (17)* | |
H6A | −0.0820 (16) | 0.462 (8) | 0.3648 (13) | 0.082 (18)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.01893 (14) | 0.03021 (15) | 0.01935 (14) | −0.00328 (7) | 0.00053 (6) | −0.00210 (7) |
O1 | 0.0196 (9) | 0.0405 (11) | 0.0245 (9) | −0.0034 (8) | 0.0032 (7) | −0.0081 (8) |
O2 | 0.0209 (9) | 0.0432 (12) | 0.0224 (9) | −0.0046 (8) | 0.0000 (8) | −0.0083 (8) |
O3 | 0.0211 (9) | 0.0408 (11) | 0.0251 (10) | −0.0057 (8) | 0.0009 (8) | −0.0107 (9) |
O4 | 0.0199 (9) | 0.0486 (12) | 0.0267 (10) | −0.0027 (9) | 0.0041 (8) | −0.0116 (9) |
O5 | 0.0233 (10) | 0.0315 (10) | 0.0313 (11) | 0.0011 (8) | −0.0024 (8) | −0.0032 (9) |
O6 | 0.0245 (10) | 0.0339 (12) | 0.0400 (14) | 0.0040 (9) | −0.0021 (9) | −0.0041 (10) |
N1 | 0.0216 (12) | 0.0588 (17) | 0.0308 (13) | −0.0081 (12) | 0.0068 (10) | −0.0121 (13) |
N2 | 0.0216 (11) | 0.0365 (13) | 0.0203 (11) | −0.0014 (9) | −0.0010 (8) | −0.0057 (9) |
N3 | 0.0193 (11) | 0.0428 (14) | 0.0286 (12) | −0.0040 (10) | −0.0012 (9) | −0.0057 (11) |
N4 | 0.0193 (11) | 0.0418 (13) | 0.0278 (12) | −0.0048 (10) | 0.0013 (9) | −0.0040 (11) |
N5 | 0.0174 (10) | 0.0307 (11) | 0.0230 (11) | −0.0036 (9) | −0.0007 (8) | −0.0042 (9) |
N6 | 0.0311 (14) | 0.0528 (17) | 0.0364 (15) | −0.0050 (12) | −0.0071 (11) | 0.0145 (14) |
N7 | 0.0218 (11) | 0.0310 (12) | 0.0227 (11) | 0.0009 (9) | 0.0021 (9) | 0.0040 (9) |
N8 | 0.0227 (11) | 0.0332 (12) | 0.0289 (12) | 0.0009 (9) | 0.0010 (10) | 0.0016 (10) |
N9 | 0.0266 (12) | 0.0330 (12) | 0.0319 (13) | 0.0003 (10) | 0.0041 (10) | 0.0016 (10) |
N10 | 0.0293 (12) | 0.0308 (12) | 0.0228 (11) | −0.0019 (10) | 0.0056 (9) | 0.0031 (10) |
C1 | 0.0204 (12) | 0.0257 (12) | 0.0231 (12) | −0.0018 (10) | −0.0006 (10) | −0.0017 (10) |
C2 | 0.0240 (12) | 0.0227 (12) | 0.0240 (12) | −0.0010 (10) | 0.0013 (10) | 0.0007 (10) |
C3 | 0.0220 (12) | 0.0241 (12) | 0.0195 (12) | 0.0005 (10) | 0.0016 (9) | −0.0012 (10) |
C4 | 0.0229 (12) | 0.0239 (12) | 0.0203 (12) | −0.0021 (10) | 0.0018 (10) | −0.0034 (10) |
Cd1—N5 | 2.244 (2) | N2—C1 | 1.337 (3) |
Cd1—N7 | 2.256 (2) | N2—N3 | 1.346 (3) |
Cd1—O2 | 2.268 (2) | N2—H3 | 0.8600 |
Cd1—O1 | 2.323 (2) | N3—N4 | 1.277 (3) |
Cd1—O5 | 2.331 (2) | N4—N5 | 1.370 (3) |
Cd1—O6 | 2.489 (2) | N5—C1 | 1.333 (3) |
O1—C3 | 1.263 (3) | N6—C2 | 1.350 (4) |
O2—C4 | 1.254 (3) | N6—H5 | 0.8600 |
O3—C3 | 1.244 (3) | N6—H6 | 0.8600 |
O4—C4 | 1.246 (3) | N7—C2 | 1.329 (3) |
O5—H5A | 0.8400 (11) | N7—N8 | 1.371 (3) |
O5—H5B | 0.8400 (11) | N8—N9 | 1.281 (3) |
O6—H6B | 0.8399 (11) | N9—N10 | 1.351 (4) |
O6—H6A | 0.8399 (11) | N10—C2 | 1.332 (3) |
N1—C1 | 1.329 (4) | N10—H4 | 0.8600 |
N1—H1 | 0.8600 | C3—C4 | 1.562 (4) |
N1—H2 | 0.8600 | ||
N5—Cd1—N7 | 105.27 (9) | N4—N3—N2 | 107.3 (2) |
N5—Cd1—O2 | 91.61 (7) | N3—N4—N5 | 110.4 (2) |
N7—Cd1—O2 | 159.74 (8) | C1—N5—N4 | 105.9 (2) |
N5—Cd1—O1 | 164.37 (7) | C1—N5—Cd1 | 133.10 (18) |
N7—Cd1—O1 | 89.43 (8) | N4—N5—Cd1 | 120.62 (17) |
O2—Cd1—O1 | 72.96 (7) | C2—N6—H5 | 120.0 |
N5—Cd1—O5 | 94.28 (8) | C2—N6—H6 | 120.0 |
N7—Cd1—O5 | 97.54 (8) | H5—N6—H6 | 120.0 |
O2—Cd1—O5 | 92.18 (8) | C2—N7—N8 | 106.0 (2) |
O1—Cd1—O5 | 88.92 (8) | C2—N7—Cd1 | 129.31 (19) |
N5—Cd1—O6 | 87.76 (8) | N8—N7—Cd1 | 123.32 (18) |
N7—Cd1—O6 | 83.38 (8) | N9—N8—N7 | 110.1 (2) |
O2—Cd1—O6 | 86.23 (8) | N8—N9—N10 | 107.3 (2) |
O1—Cd1—O6 | 88.71 (8) | C2—N10—N9 | 108.6 (2) |
O5—Cd1—O6 | 177.45 (7) | C2—N10—H4 | 125.7 |
C3—O1—Cd1 | 114.45 (17) | N9—N10—H4 | 125.7 |
C4—O2—Cd1 | 116.39 (17) | N1—C1—N5 | 126.3 (3) |
Cd1—O5—H5A | 118 (3) | N1—C1—N2 | 126.1 (3) |
Cd1—O5—H5B | 119 (3) | N5—C1—N2 | 107.6 (2) |
H5A—O5—H5B | 103.6 (3) | N7—C2—N10 | 108.0 (2) |
Cd1—O6—H6B | 111 (3) | N7—C2—N6 | 126.3 (3) |
Cd1—O6—H6A | 114 (4) | N10—C2—N6 | 125.7 (3) |
H6B—O6—H6A | 103.6 (3) | O3—C3—O1 | 125.5 (2) |
C1—N1—H1 | 120.0 | O3—C3—C4 | 116.8 (2) |
C1—N1—H2 | 120.0 | O1—C3—C4 | 117.7 (2) |
H1—N1—H2 | 120.0 | O4—C4—O2 | 126.2 (3) |
C1—N2—N3 | 108.8 (2) | O4—C4—C3 | 116.6 (2) |
C1—N2—H3 | 125.6 | O2—C4—C3 | 117.2 (2) |
N3—N2—H3 | 125.6 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H2···O5i | 0.86 | 2.20 | 3.027 (4) | 161 |
N1—H1···O2 | 0.86 | 2.20 | 2.985 (3) | 151 |
N2—H3···O4ii | 0.86 | 1.86 | 2.704 (3) | 167 |
N10—H4···O3iii | 0.86 | 1.79 | 2.647 (3) | 172 |
N6—H6···O1iii | 0.86 | 2.21 | 3.009 (4) | 154 |
O5—H5A···N4iv | 0.84 | 2.03 | 2.807 (3) | 153 (4) |
O5—H5A···N3iv | 0.84 (2) | 2.62 (4) | 3.183 (3) | 126 (4) |
O5—H5B···O6v | 0.84 (4) | 1.97 (3) | 2.792 (3) | 167 (4) |
O6—H6A···O3vi | 0.84 (3) | 2.32 (3) | 2.853 (3) | 122 (4) |
O6—H6A···O4vi | 0.84 (3) | 1.97 (3) | 2.779 (3) | 161 (3) |
O6—H6B···N6 | 0.84 (1) | 2.58 (3) | 3.227 (4) | 135 (4) |
Symmetry codes: (i) −x, −y, −z+1; (ii) x+1/2, −y+1/2, −z+1; (iii) −x, y+1/2, −z+1/2; (iv) −x+1/2, y−1/2, z; (v) x, y−1, z; (vi) −x−1/2, y+1/2, z. |
Cd1—N5 | 2.244 (2) | Cd1—O1 | 2.323 (2) |
Cd1—N7 | 2.256 (2) | Cd1—O5 | 2.331 (2) |
Cd1—O2 | 2.268 (2) | Cd1—O6 | 2.489 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H2···O5i | 0.86 | 2.20 | 3.027 (4) | 161.4 |
N1—H1···O2 | 0.86 | 2.20 | 2.985 (3) | 151.0 |
N2—H3···O4ii | 0.86 | 1.86 | 2.704 (3) | 166.9 |
N10—H4···O3iii | 0.86 | 1.79 | 2.647 (3) | 171.7 |
N6—H6···O1iii | 0.86 | 2.21 | 3.009 (4) | 153.5 |
O5—H5A···N4iv | 0.84 | 2.03 | 2.807 (3) | 153 (4) |
O5—H5A···N3iv | 0.84 (2) | 2.62 (4) | 3.183 (3) | 126 (4) |
O5—H5B···O6v | 0.84 (4) | 1.97 (3) | 2.792 (3) | 167 (4) |
O6—H6A···O3vi | 0.84 (3) | 2.32 (3) | 2.853 (3) | 122 (4) |
O6—H6A···O4vi | 0.84 (3) | 1.97 (3) | 2.779 (3) | 161 (3) |
O6—H6B···N6 | 0.84 (1) | 2.58 (3) | 3.227 (4) | 135 (4) |
Symmetry codes: (i) −x, −y, −z+1; (ii) x+1/2, −y+1/2, −z+1; (iii) −x, y+1/2, −z+1/2; (iv) −x+1/2, y−1/2, z; (v) x, y−1, z; (vi) −x−1/2, y+1/2, z. |
Acknowledgements
The authors are grateful for financial support from the Natural Science Fund for Young Scholars of Fujian Province (grant No. 2011 J05018).
References
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5-Amino-tetrazole (atz), as multifunctional small molecular tetrazolate ligands, is isosteric with the carboxylate group and has five binding sites (one amino group and four imino-nitrogen atoms). It has been used to construct some interesting MOFs (Wang et al., 2010; Yu et al., 2010; He et al., 2006; Wei et al., 2010). Oxalate (ox), on the other hand, is quite unique due to its function as a bis-bidentate ligand, and a number of its coordination compounds have been obtained, with rigid framework structures. So we attempted to use 5-amino-tetrazole and oxalate ions as mixed ligands to construct new frameworks (Wang et al., 2010; Zhai et al., 2007; García-Couceiro et al., 2005; Prasad et al., 2002). Herein we report on a new cadmium-atz-ox complex.
The title complex comprises one CdII ion, two atz ligands, one oxalate ligand and two aqua ligands (Fig. 1). The CdII center adopts an octahedral coordination geometry that is formed by two nitrogen atoms from two atz ligands, two oxygen atoms from the oxalate ligand, and two aqua ligands. The observed Cd—O and Cd—N bond distances and bond angles reveal usual values (Table 1). There are abundant hydrogen bonds in the crystal structure. Complex molecules pack into a three-dimensional supramolecular structure, via hydrogen bonding interactions (Fig. 2 and Table 2).