organic compounds
5-(5′-Fluoro-2′-methoxybiphenyl-3-yl)-1,3,4-oxadiazol-2-amine
aDepartment of Studies in Physics, University of Mysore, Manasagangotri, Mysore 570 006, India, bDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri, Mangalore 574 199, India, and cPost-Graduate Department of Physics & Electronics, University of Jammu, Jammu Tawi 180 006, India
*Correspondence e-mail: dr@physics.uni-mysore.ac.in
In the title compound, C15H12FN3O2, the dihedral angles between the central benzene ring and the pendant benzene and oxadiazole rings are 45.05 (13) and 15.60 (14)°, respectively. The C atom of the methoxy group is roughly coplanar with its attached ring [displacement = 0.178 (4) Å]. In the crystal, N—H⋯N hydrogen bonds link the molecules into [010] chains. Weak C—H⋯π interactions are also observed.
CCDC reference: 962871
Related literature
For background to the title compound, see: Ainsworth (1965); Paik et al. (2002); Kulkarni et al. (2004). For a related structure, see: Zheng et al. (2012).
Experimental
Crystal data
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Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009).
Supporting information
CCDC reference: 962871
10.1107/S1600536813031206/hb7155sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813031206/hb7155Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813031206/hb7155Isup3.cml
To a solution of 5'-fluoro-2'-methoxybiphenyl-3-carbohydrazide (3.84 mmol)in 1,4-dioxane (10 ml) cyanogen bromide (3.84 mmol) was added, followed by a solution of sodium bicarbonate (3.84 mmol) in water (10 ml). The resulting mixture was stirred at room temperature for 2 h. The reaction mixture was taken in ethyl acetate (100 ml), washed with water (20 ml) followed by saturated sodium chloride solution (20 ml) and dried over sodium sulfate. The resulting solution was concentrated and purified by
[30–40% ethyl acetate in petroleum ether] to afford the title compound (M.P. 223–226°C).The H atoms were positioned geometrically and were refined as riding on their parent C and N atoms, with C—H distances of 0.88–0.95 Å, N—H distance of 0.86 Å and with Uiso(H) = 1.2Ueq(C).
Data collection: CrysAlis PRO (Oxford Diffraction, 2010); cell
CrysAlis PRO (Oxford Diffraction, 2010); data reduction: CrysAlis PRO (Oxford Diffraction, 2010); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012) and Mercury (Macrae et al., 2008); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. ORTEP view of the molecule with displacement ellipsoids drawn at the 40% probability level. | |
Fig. 2. The packing arrangement of molecules viewed along the a axis. |
C15H12FN3O2 | F(000) = 592 |
Mr = 285.28 | Dx = 1.405 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1316 reflections |
a = 12.9105 (9) Å | θ = 4.1–28.0° |
b = 6.1738 (4) Å | µ = 0.11 mm−1 |
c = 16.9255 (11) Å | T = 293 K |
β = 90.341 (7)° | Block, colourless |
V = 1349.05 (16) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 4 |
Oxford Diffraction Xcalibur Sapphire3 CCD diffractometer | 2650 independent reflections |
Radiation source: fine-focus sealed tube | 1382 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
Detector resolution: 16.1049 pixels mm-1 | θmax = 26.0°, θmin = 3.5° |
ω scans | h = −8→15 |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010) | k = −7→4 |
Tmin = 0.806, Tmax = 1.000 | l = −17→20 |
5027 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.054 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0316P)2] where P = (Fo2 + 2Fc2)/3 |
2650 reflections | (Δ/σ)max = 0.001 |
191 parameters | Δρmax = 0.18 e Å−3 |
0 restraints | Δρmin = −0.18 e Å−3 |
C15H12FN3O2 | V = 1349.05 (16) Å3 |
Mr = 285.28 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 12.9105 (9) Å | µ = 0.11 mm−1 |
b = 6.1738 (4) Å | T = 293 K |
c = 16.9255 (11) Å | 0.30 × 0.20 × 0.20 mm |
β = 90.341 (7)° |
Oxford Diffraction Xcalibur Sapphire3 CCD diffractometer | 2650 independent reflections |
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010) | 1382 reflections with I > 2σ(I) |
Tmin = 0.806, Tmax = 1.000 | Rint = 0.048 |
5027 measured reflections |
R[F2 > 2σ(F2)] = 0.054 | 0 restraints |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.18 e Å−3 |
2650 reflections | Δρmin = −0.18 e Å−3 |
191 parameters |
Experimental. CrysAlis PRO, Agilent Technologies, Version 1.171.36.28 (release 01–02-2013 CrysAlis171. NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.89022 (14) | 0.0443 (3) | 0.56943 (11) | 0.0411 (5) | |
C2 | 0.9336 (2) | 0.0508 (4) | 0.64301 (15) | 0.0357 (7) | |
N3 | 0.95451 (18) | −0.1405 (3) | 0.67077 (13) | 0.0435 (6) | |
N4 | 0.92173 (18) | −0.2865 (3) | 0.61121 (14) | 0.0440 (6) | |
C5 | 0.8848 (2) | −0.1745 (4) | 0.55387 (16) | 0.0361 (7) | |
N6 | 0.94739 (18) | 0.2434 (3) | 0.67575 (14) | 0.0522 (7) | |
H6A | 0.9738 | 0.2534 | 0.7224 | 0.063* | |
H6B | 0.9299 | 0.3586 | 0.6504 | 0.063* | |
C7 | 0.8429 (2) | −0.2443 (4) | 0.47839 (16) | 0.0394 (7) | |
C8 | 0.8602 (2) | −0.4578 (4) | 0.45329 (17) | 0.0454 (8) | |
H8 | 0.8959 | −0.5549 | 0.4854 | 0.054* | |
C9 | 0.8235 (2) | −0.5213 (4) | 0.38043 (18) | 0.0480 (8) | |
H9 | 0.8363 | −0.6615 | 0.3628 | 0.058* | |
C10 | 0.7682 (2) | −0.3804 (4) | 0.33300 (17) | 0.0466 (8) | |
H10 | 0.7439 | −0.4268 | 0.2840 | 0.056* | |
C11 | 0.7485 (2) | −0.1694 (4) | 0.35787 (16) | 0.0388 (7) | |
C12 | 0.7856 (2) | −0.1043 (4) | 0.43139 (16) | 0.0405 (7) | |
H12 | 0.7718 | 0.0352 | 0.4493 | 0.049* | |
C13 | 0.6929 (2) | −0.0182 (4) | 0.30377 (17) | 0.0411 (7) | |
C14 | 0.7207 (2) | −0.0126 (5) | 0.22425 (18) | 0.0506 (8) | |
H14 | 0.7731 | −0.1027 | 0.2059 | 0.061* | |
C15 | 0.6709 (2) | 0.1257 (5) | 0.17307 (18) | 0.0524 (9) | |
F15 | 0.70017 (16) | 0.1262 (3) | 0.09598 (11) | 0.0846 (7) | |
C16 | 0.5951 (3) | 0.2629 (5) | 0.19672 (19) | 0.0531 (9) | |
H16 | 0.5637 | 0.3574 | 0.1611 | 0.064* | |
C17 | 0.5654 (2) | 0.2585 (5) | 0.27592 (17) | 0.0517 (9) | |
H17 | 0.5122 | 0.3480 | 0.2932 | 0.062* | |
C18 | 0.6147 (2) | 0.1221 (4) | 0.32879 (17) | 0.0441 (8) | |
O19 | 0.58667 (17) | 0.1049 (3) | 0.40644 (12) | 0.0614 (7) | |
C20 | 0.5209 (3) | 0.2668 (6) | 0.4382 (2) | 0.0936 (14) | |
H20A | 0.5506 | 0.4071 | 0.4290 | 0.140* | |
H20B | 0.5134 | 0.2441 | 0.4940 | 0.140* | |
H20C | 0.4541 | 0.2588 | 0.4130 | 0.140* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0593 (13) | 0.0289 (9) | 0.0351 (11) | 0.0003 (9) | −0.0166 (10) | 0.0016 (9) |
C2 | 0.0461 (17) | 0.0308 (14) | 0.0301 (16) | 0.0027 (12) | −0.0122 (14) | 0.0017 (13) |
N3 | 0.0615 (17) | 0.0327 (12) | 0.0360 (15) | 0.0038 (11) | −0.0156 (13) | 0.0011 (12) |
N4 | 0.0553 (16) | 0.0352 (13) | 0.0412 (15) | 0.0026 (11) | −0.0122 (14) | 0.0020 (11) |
C5 | 0.0457 (17) | 0.0279 (14) | 0.0345 (17) | −0.0006 (12) | −0.0035 (14) | −0.0008 (13) |
N6 | 0.0814 (19) | 0.0304 (12) | 0.0444 (16) | 0.0014 (12) | −0.0292 (15) | −0.0041 (12) |
C7 | 0.0481 (17) | 0.0339 (15) | 0.0362 (18) | −0.0033 (13) | −0.0061 (15) | 0.0014 (14) |
C8 | 0.0564 (19) | 0.0326 (14) | 0.0471 (19) | −0.0002 (14) | −0.0083 (16) | 0.0077 (14) |
C9 | 0.061 (2) | 0.0363 (15) | 0.047 (2) | −0.0004 (14) | −0.0050 (17) | −0.0040 (15) |
C10 | 0.060 (2) | 0.0403 (17) | 0.0391 (18) | −0.0048 (14) | −0.0127 (16) | −0.0072 (14) |
C11 | 0.0448 (18) | 0.0384 (15) | 0.0331 (17) | −0.0026 (13) | −0.0104 (15) | −0.0035 (13) |
C12 | 0.0461 (17) | 0.0359 (15) | 0.0393 (18) | −0.0002 (13) | −0.0103 (15) | −0.0027 (14) |
C13 | 0.0440 (18) | 0.0432 (17) | 0.0359 (18) | −0.0017 (13) | −0.0122 (15) | −0.0060 (14) |
C14 | 0.0465 (19) | 0.058 (2) | 0.047 (2) | 0.0030 (15) | −0.0033 (16) | 0.0008 (17) |
C15 | 0.053 (2) | 0.066 (2) | 0.0376 (19) | −0.0013 (17) | −0.0043 (17) | 0.0113 (17) |
F15 | 0.0898 (16) | 0.1211 (17) | 0.0430 (12) | 0.0135 (13) | 0.0050 (12) | 0.0220 (12) |
C16 | 0.063 (2) | 0.052 (2) | 0.044 (2) | −0.0017 (17) | −0.0132 (18) | 0.0107 (17) |
C17 | 0.056 (2) | 0.0550 (19) | 0.044 (2) | 0.0098 (16) | −0.0097 (17) | 0.0001 (17) |
C18 | 0.0494 (19) | 0.0460 (17) | 0.0367 (18) | −0.0024 (14) | −0.0126 (16) | 0.0019 (15) |
O19 | 0.0755 (17) | 0.0654 (15) | 0.0433 (14) | 0.0219 (12) | −0.0017 (13) | −0.0034 (12) |
C20 | 0.131 (4) | 0.092 (3) | 0.059 (3) | 0.044 (3) | 0.005 (3) | −0.012 (2) |
O1—C2 | 1.363 (3) | C11—C13 | 1.490 (4) |
O1—C5 | 1.378 (3) | C12—H12 | 0.9300 |
C2—N3 | 1.299 (3) | C13—C14 | 1.396 (4) |
C2—N6 | 1.323 (3) | C13—C18 | 1.398 (4) |
N3—N4 | 1.415 (3) | C14—C15 | 1.374 (4) |
N4—C5 | 1.281 (3) | C14—H14 | 0.9300 |
C5—C7 | 1.450 (3) | C15—C16 | 1.356 (4) |
N6—H6A | 0.8600 | C15—F15 | 1.361 (3) |
N6—H6B | 0.8600 | C16—C17 | 1.397 (4) |
C7—C12 | 1.386 (3) | C16—H16 | 0.9300 |
C7—C8 | 1.403 (3) | C17—C18 | 1.381 (4) |
C8—C9 | 1.375 (4) | C17—H17 | 0.9300 |
C8—H8 | 0.9300 | C18—O19 | 1.369 (3) |
C9—C10 | 1.380 (4) | O19—C20 | 1.420 (3) |
C9—H9 | 0.9300 | C20—H20A | 0.9600 |
C10—C11 | 1.393 (3) | C20—H20B | 0.9600 |
C10—H10 | 0.9300 | C20—H20C | 0.9600 |
C11—C12 | 1.390 (3) | ||
C2—O1—C5 | 102.9 (2) | C7—C12—H12 | 119.6 |
N3—C2—N6 | 129.7 (3) | C11—C12—H12 | 119.6 |
N3—C2—O1 | 112.8 (2) | C14—C13—C18 | 117.9 (3) |
N6—C2—O1 | 117.5 (2) | C14—C13—C11 | 118.8 (3) |
C2—N3—N4 | 105.1 (2) | C18—C13—C11 | 123.3 (3) |
C5—N4—N3 | 107.7 (2) | C15—C14—C13 | 120.1 (3) |
N4—C5—O1 | 111.5 (2) | C15—C14—H14 | 120.0 |
N4—C5—C7 | 130.0 (2) | C13—C14—H14 | 120.0 |
O1—C5—C7 | 118.6 (2) | C16—C15—F15 | 119.1 (3) |
C2—N6—H6A | 120.0 | C16—C15—C14 | 122.6 (3) |
C2—N6—H6B | 120.0 | F15—C15—C14 | 118.3 (3) |
H6A—N6—H6B | 120.0 | C15—C16—C17 | 118.3 (3) |
C12—C7—C8 | 119.9 (3) | C15—C16—H16 | 120.9 |
C12—C7—C5 | 121.0 (2) | C17—C16—H16 | 120.9 |
C8—C7—C5 | 119.1 (2) | C18—C17—C16 | 120.4 (3) |
C9—C8—C7 | 119.0 (3) | C18—C17—H17 | 119.8 |
C9—C8—H8 | 120.5 | C16—C17—H17 | 119.8 |
C7—C8—H8 | 120.5 | O19—C18—C17 | 123.1 (3) |
C8—C9—C10 | 121.1 (3) | O19—C18—C13 | 116.0 (3) |
C8—C9—H9 | 119.5 | C17—C18—C13 | 120.8 (3) |
C10—C9—H9 | 119.5 | C18—O19—C20 | 118.1 (3) |
C9—C10—C11 | 120.6 (3) | O19—C20—H20A | 109.5 |
C9—C10—H10 | 119.7 | O19—C20—H20B | 109.5 |
C11—C10—H10 | 119.7 | H20A—C20—H20B | 109.5 |
C12—C11—C10 | 118.6 (3) | O19—C20—H20C | 109.5 |
C12—C11—C13 | 122.1 (2) | H20A—C20—H20C | 109.5 |
C10—C11—C13 | 119.3 (2) | H20B—C20—H20C | 109.5 |
C7—C12—C11 | 120.9 (2) | ||
C5—O1—C2—N3 | 0.6 (3) | C10—C11—C12—C7 | 1.3 (4) |
C5—O1—C2—N6 | −178.7 (2) | C13—C11—C12—C7 | −175.8 (3) |
N6—C2—N3—N4 | 178.8 (3) | C12—C11—C13—C14 | 133.5 (3) |
O1—C2—N3—N4 | −0.4 (3) | C10—C11—C13—C14 | −43.7 (4) |
C2—N3—N4—C5 | 0.0 (3) | C12—C11—C13—C18 | −45.5 (4) |
N3—N4—C5—O1 | 0.4 (3) | C10—C11—C13—C18 | 137.3 (3) |
N3—N4—C5—C7 | 178.7 (3) | C18—C13—C14—C15 | −0.8 (4) |
C2—O1—C5—N4 | −0.6 (3) | C11—C13—C14—C15 | −179.8 (2) |
C2—O1—C5—C7 | −179.2 (2) | C13—C14—C15—C16 | 1.0 (5) |
N4—C5—C7—C12 | 165.3 (3) | C13—C14—C15—F15 | −179.9 (3) |
O1—C5—C7—C12 | −16.4 (4) | F15—C15—C16—C17 | 179.4 (3) |
N4—C5—C7—C8 | −14.2 (5) | C14—C15—C16—C17 | −1.6 (5) |
O1—C5—C7—C8 | 164.1 (2) | C15—C16—C17—C18 | 1.9 (5) |
C12—C7—C8—C9 | 2.8 (4) | C16—C17—C18—O19 | −177.6 (3) |
C5—C7—C8—C9 | −177.7 (3) | C16—C17—C18—C13 | −1.8 (5) |
C7—C8—C9—C10 | −1.6 (4) | C14—C13—C18—O19 | 177.3 (3) |
C8—C9—C10—C11 | 0.3 (4) | C11—C13—C18—O19 | −3.7 (4) |
C9—C10—C11—C12 | −0.1 (4) | C14—C13—C18—C17 | 1.2 (4) |
C9—C10—C11—C13 | 177.2 (3) | C11—C13—C18—C17 | −179.8 (3) |
C8—C7—C12—C11 | −2.7 (4) | C17—C18—O19—C20 | −14.6 (4) |
C5—C7—C12—C11 | 177.8 (3) | C13—C18—O19—C20 | 169.5 (3) |
Cg3 is the centroid of the C13–C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···N3i | 0.86 | 2.13 | 2.972 (3) | 166 |
N6—H6B···N4ii | 0.86 | 2.29 | 3.118 (3) | 161 |
C17—H17···Cg3iii | 0.93 | 2.72 | 3.53 | 146 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x, y+1, z; (iii) −x+1, y+1/2, −z+1/2. |
Cg3 is the centroid of the C13–C18 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···N3i | 0.86 | 2.131 | 2.972 (3) | 166 |
N6—H6B···N4ii | 0.86 | 2.292 | 3.118 (3) | 161 |
C17—H17···Cg3iii | 0.93 | 2.72 | 3.53 | 146 |
Symmetry codes: (i) −x+2, y+1/2, −z+3/2; (ii) x, y+1, z; (iii) −x+1, y+1/2, −z+1/2. |
Acknowledgements
RK acknowledges the DST, New Delhi, for the single-crystal X-ray diffractometer sanctioned as a National Facility under project No. SR/S2/CMP-47/2003. MKU thanks the DST, New Delhi, for the award of an INSPIRE Fellowship. VKG is thankful to the University of Jammu, Jammu, India, for financial support. DR acknowledges the UGC, New Delhi, for financial support under the Major Research Project- scheme [No. F.41-882/2012 (SR)].
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The title compound, C15H12FN3O2, a derivative of 1,3,4 oxadiazole (Ainsworth, 1965), has a wide variety of uses, particularly as a bioactive compound in medicine and agriculture, as a dye stuff, and used in UV absorbing and fluorescent materials, heat resistant polymers and scintillators (Paik et al., 2002; Kulkarni et al., 2004). As part of our studies in this area, we now report the structure of the title compound.
The bond distances in the title compound are comparable to the closely related structure 5-(4-Methylphenyl)-1,3,4-oxadiazol-2-amine (Zheng et al., 2012). The oxadiazole ring A makes dihedral angles of 15.64 (9)° and 55.84 (1)° respectively, with the phenyl rings B and C. The dihedral angle between the phenyl ring B and ring C is 45.19 (1)°. Classical N6—H6A···N3 and N6—H6B···N4 hydrogen bonds link the adjacent molecules into [010] chains. Weak C—H···π interactions are also observed.