organic compounds
Methyl 2-amino-4,5-dimethoxybenzoate
aMolecular Sciences Institute, School of Chemistry, University of the Witwatersrand, PO WITS 2050, Johannesburg, South Africa
*Correspondence e-mail: tania.hill@gmail.com
The title compound, C10H13NO4, is essentially planar, with an r.m.s. deviation of 0.049 Å. An intramolecular C—H⋯O hydrogen bond occurs and the amino group forms an intramolecular N—H⋯Oester hydrogen bond; the other H atom forms an intermolecular N—H⋯Ocarbonyl hydrogen bond, leading to the formation of a helical chain that runs along the b-axis direction.
CCDC reference: 971313
Related literature
For similar crystal structures, see: Zhang et al. (2009); Smith & Elsegood (2002).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2005); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 2012).
Supporting information
CCDC reference: 971313
10.1107/S1600536813030894/ng5347sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813030894/ng5347Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813030894/ng5347Isup3.cml
Methyl 2-amino-4,5-dimethoxybenzoate was obtained commercially. (I) was redissolved in warm MeOH and allowed to cool to room terperature. Yellow crystals suitable for single-crystal diffraction were obtained by slow evaporation over a few days.
All hydrogen atoms were positioned geometrically and refined using a riding model, with C—H = 0.95 Å Uiso(H)= 1.2 Ueq(C) for the aromatic H and with C—H = 0.98 Å Uiso(H)= 1.5 Ueq(C)for methyl H atoms. The methyl groups were allowed to rotate with a fixed angle arround the C—C bond to best fit the experimental electron density. The amino hydrogens were freely refined.
Data collection: APEX2 (Bruker, 2005); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus and XPREP (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: DIAMOND (Brandenburg & Putz, 2005); software used to prepare material for publication: WinGX (Farrugia, 2012).Fig. 1. View of (I) (50% probability displacement ellipsoids) | |
Fig. 2. Packing of (I) viewed along [0 1 0]. H atoms omitted. |
C10H13NO4 | F(000) = 448 |
Mr = 211.21 | Dx = 1.38 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3834 reflections |
a = 11.1933 (4) Å | θ = 3.0–28.3° |
b = 7.7564 (3) Å | µ = 0.11 mm−1 |
c = 13.7728 (5) Å | T = 173 K |
β = 121.741 (2)° | Cuboid, yellow |
V = 1016.91 (7) Å3 | 0.5 × 0.29 × 0.25 mm |
Z = 4 |
Bruker APEXII CCD area-detector diffractometer | 2543 independent reflections |
Radiation source: fine-focus sealed tube | 2080 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.035 |
Detector resolution: 512 pixels mm-1 | θmax = 28.3°, θmin = 2.1° |
ω scans | h = −14→14 |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | k = −10→10 |
Tmin = 0.948, Tmax = 0.974 | l = −18→18 |
9994 measured reflections |
Refinement on F2 | 0 restraints |
Least-squares matrix: full | H atoms treated by a mixture of independent and constrained refinement |
R[F2 > 2σ(F2)] = 0.038 | w = 1/[σ2(Fo2) + (0.0501P)2 + 0.2646P] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.109 | (Δ/σ)max < 0.001 |
S = 1.05 | Δρmax = 0.27 e Å−3 |
2543 reflections | Δρmin = −0.25 e Å−3 |
147 parameters |
C10H13NO4 | V = 1016.91 (7) Å3 |
Mr = 211.21 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 11.1933 (4) Å | µ = 0.11 mm−1 |
b = 7.7564 (3) Å | T = 173 K |
c = 13.7728 (5) Å | 0.5 × 0.29 × 0.25 mm |
β = 121.741 (2)° |
Bruker APEXII CCD area-detector diffractometer | 2543 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 2080 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.974 | Rint = 0.035 |
9994 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.109 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.27 e Å−3 |
2543 reflections | Δρmin = −0.25 e Å−3 |
147 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.19769 (12) | 0.09141 (14) | −0.01177 (10) | 0.0237 (2) | |
C2 | 0.16865 (12) | 0.16680 (14) | −0.11496 (10) | 0.0243 (2) | |
C3 | 0.22538 (12) | 0.33134 (15) | −0.11104 (10) | 0.0250 (2) | |
H3 | 0.2062 | 0.3839 | −0.1801 | 0.03* | |
C4 | 0.30761 (12) | 0.41704 (14) | −0.00949 (10) | 0.0239 (2) | |
C5 | 0.33814 (12) | 0.34050 (14) | 0.09484 (9) | 0.0234 (2) | |
C6 | 0.28295 (12) | 0.18137 (14) | 0.09202 (9) | 0.0235 (2) | |
H6 | 0.3024 | 0.1301 | 0.1615 | 0.028* | |
C7 | 0.13820 (12) | −0.07648 (14) | −0.01151 (10) | 0.0256 (2) | |
C8 | 0.13103 (15) | −0.30520 (15) | 0.09811 (12) | 0.0340 (3) | |
H8A | 0.0291 | −0.3006 | 0.064 | 0.051* | |
H8B | 0.1763 | −0.3421 | 0.1779 | 0.051* | |
H8C | 0.1531 | −0.3875 | 0.0558 | 0.051* | |
C9 | 0.33489 (15) | 0.66056 (17) | −0.10146 (11) | 0.0345 (3) | |
H9A | 0.3706 | 0.591 | −0.1402 | 0.052* | |
H9B | 0.3805 | 0.7738 | −0.0826 | 0.052* | |
H9C | 0.2331 | 0.6751 | −0.1518 | 0.052* | |
C10 | 0.44564 (14) | 0.36738 (17) | 0.29532 (10) | 0.0328 (3) | |
H10A | 0.3554 | 0.3526 | 0.29 | 0.049* | |
H10B | 0.5049 | 0.4467 | 0.3579 | 0.049* | |
H10C | 0.4927 | 0.2554 | 0.31 | 0.049* | |
N1 | 0.09141 (12) | 0.08643 (15) | −0.21889 (9) | 0.0326 (3) | |
O1 | 0.05611 (10) | −0.15847 (12) | −0.09659 (8) | 0.0376 (2) | |
O2 | 0.18202 (10) | −0.13617 (11) | 0.09315 (7) | 0.0324 (2) | |
O3 | 0.36486 (9) | 0.57535 (10) | 0.00121 (7) | 0.0293 (2) | |
O4 | 0.42222 (9) | 0.43624 (10) | 0.19078 (7) | 0.0279 (2) | |
H1B | 0.0560 (16) | 0.1496 (19) | −0.2812 (14) | 0.037 (4)* | |
H1A | 0.0410 (18) | −0.007 (3) | −0.2225 (15) | 0.056 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0235 (5) | 0.0231 (5) | 0.0239 (5) | 0.0032 (4) | 0.0121 (4) | −0.0001 (4) |
C2 | 0.0221 (5) | 0.0261 (5) | 0.0232 (5) | 0.0050 (4) | 0.0110 (4) | −0.0010 (4) |
C3 | 0.0261 (6) | 0.0278 (6) | 0.0223 (5) | 0.0056 (4) | 0.0137 (5) | 0.0038 (4) |
C4 | 0.0248 (6) | 0.0229 (5) | 0.0268 (5) | 0.0033 (4) | 0.0155 (5) | 0.0024 (4) |
C5 | 0.0236 (5) | 0.0249 (5) | 0.0219 (5) | 0.0017 (4) | 0.0121 (4) | −0.0004 (4) |
C6 | 0.0255 (6) | 0.0237 (5) | 0.0216 (5) | 0.0021 (4) | 0.0127 (4) | 0.0011 (4) |
C7 | 0.0250 (6) | 0.0246 (5) | 0.0272 (6) | 0.0032 (4) | 0.0137 (5) | −0.0011 (4) |
C8 | 0.0438 (8) | 0.0221 (5) | 0.0417 (7) | −0.0015 (5) | 0.0263 (6) | 0.0015 (5) |
C9 | 0.0402 (7) | 0.0328 (6) | 0.0336 (6) | 0.0003 (5) | 0.0214 (6) | 0.0092 (5) |
C10 | 0.0398 (7) | 0.0348 (6) | 0.0218 (6) | −0.0095 (5) | 0.0148 (5) | −0.0019 (5) |
N1 | 0.0371 (6) | 0.0324 (6) | 0.0211 (5) | −0.0008 (5) | 0.0102 (5) | −0.0008 (4) |
O1 | 0.0411 (5) | 0.0323 (5) | 0.0305 (5) | −0.0088 (4) | 0.0127 (4) | −0.0055 (4) |
O2 | 0.0431 (5) | 0.0241 (4) | 0.0295 (4) | −0.0050 (4) | 0.0188 (4) | −0.0004 (3) |
O3 | 0.0363 (5) | 0.0258 (4) | 0.0271 (4) | −0.0031 (3) | 0.0176 (4) | 0.0029 (3) |
O4 | 0.0341 (5) | 0.0271 (4) | 0.0215 (4) | −0.0063 (3) | 0.0140 (4) | −0.0018 (3) |
C1—C2 | 1.4077 (15) | C8—O2 | 1.4458 (14) |
C1—C6 | 1.4162 (15) | C8—H8A | 0.98 |
C1—C7 | 1.4634 (16) | C8—H8B | 0.98 |
C2—N1 | 1.3722 (15) | C8—H8C | 0.98 |
C2—C3 | 1.4138 (16) | C9—O3 | 1.4317 (14) |
C3—C4 | 1.3751 (16) | C9—H9A | 0.98 |
C3—H3 | 0.95 | C9—H9B | 0.98 |
C4—O3 | 1.3568 (13) | C9—H9C | 0.98 |
C4—C5 | 1.4203 (15) | C10—O4 | 1.4247 (14) |
C5—O4 | 1.3692 (13) | C10—H10A | 0.98 |
C5—C6 | 1.3716 (15) | C10—H10B | 0.98 |
C6—H6 | 0.95 | C10—H10C | 0.98 |
C7—O1 | 1.2202 (14) | N1—H1B | 0.881 (16) |
C7—O2 | 1.3374 (14) | N1—H1A | 0.90 (2) |
C2—C1—C6 | 119.31 (10) | H8A—C8—H8B | 109.5 |
C2—C1—C7 | 120.56 (10) | O2—C8—H8C | 109.5 |
C6—C1—C7 | 120.12 (10) | H8A—C8—H8C | 109.5 |
N1—C2—C1 | 123.27 (11) | H8B—C8—H8C | 109.5 |
N1—C2—C3 | 118.28 (10) | O3—C9—H9A | 109.5 |
C1—C2—C3 | 118.42 (10) | O3—C9—H9B | 109.5 |
C4—C3—C2 | 121.47 (10) | H9A—C9—H9B | 109.5 |
C4—C3—H3 | 119.3 | O3—C9—H9C | 109.5 |
C2—C3—H3 | 119.3 | H9A—C9—H9C | 109.5 |
O3—C4—C3 | 124.97 (10) | H9B—C9—H9C | 109.5 |
O3—C4—C5 | 114.83 (10) | O4—C10—H10A | 109.5 |
C3—C4—C5 | 120.20 (10) | O4—C10—H10B | 109.5 |
O4—C5—C6 | 125.87 (10) | H10A—C10—H10B | 109.5 |
O4—C5—C4 | 115.28 (10) | O4—C10—H10C | 109.5 |
C6—C5—C4 | 118.85 (10) | H10A—C10—H10C | 109.5 |
C5—C6—C1 | 121.75 (10) | H10B—C10—H10C | 109.5 |
C5—C6—H6 | 119.1 | C2—N1—H1B | 118.5 (10) |
C1—C6—H6 | 119.1 | C2—N1—H1A | 117.0 (12) |
O1—C7—O2 | 121.23 (11) | H1B—N1—H1A | 116.4 (15) |
O1—C7—C1 | 125.11 (11) | C7—O2—C8 | 115.77 (9) |
O2—C7—C1 | 113.66 (10) | C4—O3—C9 | 117.30 (9) |
O2—C8—H8A | 109.5 | C5—O4—C10 | 116.08 (9) |
O2—C8—H8B | 109.5 | ||
C6—C1—C2—N1 | 177.57 (11) | C4—C5—C6—C1 | 0.54 (17) |
C7—C1—C2—N1 | −3.72 (17) | C2—C1—C6—C5 | 0.06 (17) |
C6—C1—C2—C3 | −0.46 (16) | C7—C1—C6—C5 | −178.65 (10) |
C7—C1—C2—C3 | 178.25 (10) | C2—C1—C7—O1 | −3.96 (18) |
N1—C2—C3—C4 | −177.87 (11) | C6—C1—C7—O1 | 174.73 (11) |
C1—C2—C3—C4 | 0.26 (16) | C2—C1—C7—O2 | 176.09 (10) |
C2—C3—C4—O3 | −179.49 (10) | C6—C1—C7—O2 | −5.22 (15) |
C2—C3—C4—C5 | 0.33 (17) | O1—C7—O2—C8 | 2.67 (16) |
O3—C4—C5—O4 | −0.88 (14) | C1—C7—O2—C8 | −177.38 (10) |
C3—C4—C5—O4 | 179.28 (10) | C3—C4—O3—C9 | 1.26 (16) |
O3—C4—C5—C6 | 179.10 (10) | C5—C4—O3—C9 | −178.57 (10) |
C3—C4—C5—C6 | −0.73 (17) | C6—C5—O4—C10 | −4.40 (16) |
O4—C5—C6—C1 | −179.48 (10) | C4—C5—O4—C10 | 175.59 (10) |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O2 | 0.95 | 2.37 | 2.7131 (14) | 101 |
N1—H1A···O1 | 0.90 (2) | 2.03 (2) | 2.702 (2) | 131 (2) |
N1—H1B···O1i | 0.88 (2) | 2.10 (2) | 2.947 (1) | 162 (1) |
Symmetry code: (i) −x, y+1/2, −z−1/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O2 | 0.95 | 2.37 | 2.7131 (14) | 100.5 |
N1—H1A···O1 | 0.90 (2) | 2.03 (2) | 2.702 (2) | 131 (2) |
N1—H1B···O1i | 0.88 (2) | 2.10 (2) | 2.947 (1) | 162 (1) |
Symmetry code: (i) −x, y+1/2, −z−1/2. |
Acknowledgements
The University of the Witwatersrand and the Molecular Sciences Institute are thanked for providing the infrastructure and financial support. Special thanks go to Dr Andreas Lemmerer of the University of the Witwatersrand for his contributions and insights toward this project. TNH wishes to thank the University of the Witwatersrand research committee for a postdoctoral fellowship.
References
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The molecular structure of (I) is presented in Figure 1, and was obtained by recrystallization of the commercially available compound. The title compound consists of an amino (C2) and methoxy (C4 and C5) substituted benzoate which was found to be essentially planar with an r.m.s. deviation of 0.049 Å; the dihedral angles shown in Table 1 further reinforce the planarity of (I). The maximum deviation observed below the calculated mean plane was found for the carbonyl oxygen (O1) at -0.136 (1) Å. Two intramolecular hydrogen bonds found between the phenyl carbon (C6), the amino (N1) and the ester O atoms (O1 and O2) with distances of 2.713 (1) Å and 2.702 (2) Å, effectively lock the ester into the molecular plane. The last hydrogen bond interaction observed between the amino (N1) and an adjacent carbonyl oxygen (O1) (symmetry operator [-x, y + 1/2, -z - 1/2]) with a distance of 2.947 (1) Å results in a helical chain along [0 1 0] (Figure 2).