organic compounds
1-(4-Methylphenylsulfonyl)-2-{[3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl]methylsulfanyl}-1H-1,3-benzimidazole
aDepartment of Studies in Chemistry, Manasagangotri, University of Mysore, Mysore 570 006, India, and bDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India
*Correspondence e-mail: lokanath@physics.uni-mysore.ac.in
In the title compound, C23H20F3N3O3S2, the benzoimidazole unit makes dihedral angles of 5.02 (1) and 76.42 (1)°, respectively, with the pyridine and methylbenzene rings; the dihedral angle between the pyridine and methylbenzene rings is 72.19 (1)°. In the crystal, molecules are connected by weak C—H⋯F, C—H⋯O and C—H⋯N hydrogen bonds. Weak C—H⋯π interactions and π–π stacking [centroid–centroid distance = 3.6485 (14) Å] are also observed. The overall packing shows a three-dimensional architecture. The contains a void of 51 Å3, but no solvent molecule (hexane or ethyl acetate) is located within it.
CCDC reference: 973284
Related literature
For the biological activity of benzoimidazole derivatives, see: Bansal & Silakari (2012); Ates-Alagoz et al. (2004). For hydrogen-bond motifs, see: Bernstein et al. (1995).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2013); cell SAINT (Bruker, 2013); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: Mercury.
Supporting information
CCDC reference: 973284
10.1107/S1600536813031899/xu5751sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536813031899/xu5751Isup2.hkl
Supporting information file. DOI: 10.1107/S1600536813031899/xu5751Isup3.cml
To a solution of 2-(((3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl)methyl)thio)-1H-benzo[d] imidazole (10 mmol) and tetrabutyl ammonium bromide (1 mmol) in toluene (20 ml), a solution of 50% KOH (25 ml) was added at 0°C followed by the addition of toluenesulfonyl chloride (12 mmol). The reaction mixture was allowed for vigorous stirring at room temperature for 6 h and the reaction progress was monitored by TLC. After the completion of the reaction, organic phase was separated from the aqueous phase and the organic phase was washed with water (20 mL) and brine (20 mL), dried over anhydrous sodium sulfate and concentrated to give crude product 2-(3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-ylthio)-1-tosyl-1H-benzo[d] imidazole which was purified by
over silica gel using hexane-EtOAc (6:4) mixture as eluent.All the H atoms were fixed geometrically (C—H = 0.93–0.96 Å) and allowed to ride on their parent atoms with Uiso(H) = 1.5Ueq(C) for mehtyl H atoms and 1.2Ueq(C) for the others.
Data collection: APEX2 (Bruker, 2013); cell
SAINT (Bruker, 2013); data reduction: SAINT (Bruker, 2013); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: Mercury (Macrae et al., 2008).Fig. 1. ORTEP diagram of the title compound with 50% probability ellipsoids. | |
Fig. 2. Packing diagram of molecule, viewed along the crystallographic c axis. Dotted lines indicate hydrogen bonds and short contacts involved. |
C23H20F3N3O3S2 | Z = 2 |
Mr = 507.56 | F(000) = 524 |
Triclinic, P1 | Dx = 1.444 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54178 Å |
a = 9.1129 (6) Å | Cell parameters from 3779 reflections |
b = 9.5116 (6) Å | θ = 3.3–64.3° |
c = 13.7914 (8) Å | µ = 2.56 mm−1 |
α = 90.978 (3)° | T = 296 K |
β = 101.749 (2)° | Block, colorless |
γ = 93.449 (3)° | 0.21 × 0.20 × 0.20 mm |
V = 1167.72 (13) Å3 |
Bruker X8 Proteum diffractometer | 3779 independent reflections |
Radiation source: Bruker MicroStar microfocus rotating anode | 3301 reflections with I > 2σ(I) |
Helios multilayer optics monochromator | Rint = 0.049 |
Detector resolution: 10.7 pixels mm-1 | θmax = 64.3°, θmin = 3.3° |
\ϕ and \ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | k = −10→9 |
Tmin = 0.615, Tmax = 0.628 | l = −15→16 |
13085 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.050 | H-atom parameters constrained |
wR(F2) = 0.144 | w = 1/[σ2(Fo2) + (0.0866P)2 + 0.3269P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max = 0.001 |
3779 reflections | Δρmax = 0.32 e Å−3 |
310 parameters | Δρmin = −0.44 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), FC*=KFC[1+0.001XFC2Λ3/SIN(2Θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.034 (2) |
C23H20F3N3O3S2 | γ = 93.449 (3)° |
Mr = 507.56 | V = 1167.72 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.1129 (6) Å | Cu Kα radiation |
b = 9.5116 (6) Å | µ = 2.56 mm−1 |
c = 13.7914 (8) Å | T = 296 K |
α = 90.978 (3)° | 0.21 × 0.20 × 0.20 mm |
β = 101.749 (2)° |
Bruker X8 Proteum diffractometer | 3779 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2013) | 3301 reflections with I > 2σ(I) |
Tmin = 0.615, Tmax = 0.628 | Rint = 0.049 |
13085 measured reflections |
R[F2 > 2σ(F2)] = 0.050 | 0 restraints |
wR(F2) = 0.144 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.32 e Å−3 |
3779 reflections | Δρmin = −0.44 e Å−3 |
310 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.12891 (6) | 0.82368 (6) | 0.42720 (4) | 0.0417 (2) | |
S2 | 0.02074 (7) | 0.62948 (6) | 0.21001 (4) | 0.0407 (2) | |
F1 | 0.4537 (4) | 1.3138 (6) | 1.0004 (3) | 0.187 (2) | |
F2 | 0.6843 (3) | 1.3482 (4) | 1.00123 (18) | 0.1404 (13) | |
F3 | 0.5875 (6) | 1.1445 (5) | 1.0016 (2) | 0.197 (2) | |
O1 | 0.4077 (2) | 1.1690 (2) | 0.82128 (13) | 0.0587 (7) | |
O2 | −0.0894 (2) | 0.6391 (2) | 0.12112 (12) | 0.0574 (6) | |
O3 | 0.1428 (2) | 0.7333 (2) | 0.23364 (15) | 0.0602 (7) | |
N1 | 0.3136 (2) | 1.0313 (2) | 0.52852 (15) | 0.0472 (7) | |
N2 | −0.0682 (2) | 0.6339 (2) | 0.30437 (14) | 0.0397 (6) | |
N3 | −0.1048 (2) | 0.6528 (2) | 0.46116 (14) | 0.0396 (6) | |
C1 | −0.1932 (2) | 0.5419 (2) | 0.30940 (17) | 0.0377 (7) | |
C2 | −0.2849 (3) | 0.4533 (3) | 0.23902 (19) | 0.0510 (8) | |
C3 | −0.4006 (3) | 0.3771 (3) | 0.2697 (2) | 0.0596 (9) | |
C4 | −0.4223 (3) | 0.3906 (3) | 0.3663 (2) | 0.0565 (9) | |
C5 | −0.3293 (3) | 0.4789 (3) | 0.4361 (2) | 0.0500 (9) | |
C6 | −0.2124 (2) | 0.5556 (3) | 0.40671 (17) | 0.0381 (7) | |
C7 | −0.0205 (2) | 0.6966 (2) | 0.40053 (16) | 0.0360 (7) | |
C8 | 0.1196 (3) | 0.8619 (3) | 0.55503 (17) | 0.0412 (7) | |
C9 | 0.2372 (2) | 0.9781 (2) | 0.59468 (17) | 0.0388 (7) | |
C10 | 0.2641 (2) | 1.0241 (3) | 0.69378 (17) | 0.0403 (7) | |
C11 | 0.3797 (3) | 1.1290 (3) | 0.72328 (18) | 0.0417 (7) | |
C12 | 0.4595 (3) | 1.1839 (3) | 0.65641 (19) | 0.0464 (8) | |
C13 | 0.4215 (3) | 1.1312 (3) | 0.5606 (2) | 0.0498 (8) | |
C14 | 0.1751 (3) | 0.9647 (4) | 0.7657 (2) | 0.0601 (10) | |
C15 | 0.5340 (3) | 1.2630 (3) | 0.8564 (2) | 0.0569 (9) | |
C16 | 0.5639 (5) | 1.2654 (5) | 0.9644 (3) | 0.0892 (14) | |
C17 | 0.0890 (2) | 0.4606 (3) | 0.21438 (16) | 0.0382 (7) | |
C18 | 0.1245 (3) | 0.3915 (3) | 0.30229 (18) | 0.0453 (8) | |
C19 | 0.1859 (3) | 0.2627 (3) | 0.3023 (2) | 0.0546 (9) | |
C20 | 0.2126 (3) | 0.2022 (3) | 0.2166 (3) | 0.0589 (10) | |
C21 | 0.1750 (4) | 0.2735 (3) | 0.1284 (2) | 0.0635 (11) | |
C22 | 0.1128 (3) | 0.4017 (3) | 0.12668 (19) | 0.0535 (9) | |
C23 | 0.2827 (5) | 0.0626 (4) | 0.2177 (4) | 0.0963 (18) | |
H2 | −0.26980 | 0.44530 | 0.17450 | 0.0610* | |
H3 | −0.46500 | 0.31570 | 0.22500 | 0.0710* | |
H4 | −0.50170 | 0.33860 | 0.38440 | 0.0680* | |
H5 | −0.34450 | 0.48670 | 0.50060 | 0.0600* | |
H8A | 0.02080 | 0.89130 | 0.55870 | 0.0490* | |
H8B | 0.13810 | 0.77850 | 0.59400 | 0.0490* | |
H12 | 0.53620 | 1.25400 | 0.67540 | 0.0560* | |
H13 | 0.47500 | 1.16800 | 0.51510 | 0.0600* | |
H14A | 0.20290 | 1.01720 | 0.82750 | 0.0900* | |
H14B | 0.19570 | 0.86770 | 0.77640 | 0.0900* | |
H14C | 0.06990 | 0.97120 | 0.73930 | 0.0900* | |
H15A | 0.51420 | 1.35660 | 0.83230 | 0.0680* | |
H15B | 0.62040 | 1.23200 | 0.83280 | 0.0680* | |
H18 | 0.10740 | 0.43130 | 0.36070 | 0.0540* | |
H19 | 0.20980 | 0.21550 | 0.36130 | 0.0650* | |
H21 | 0.19240 | 0.23390 | 0.07000 | 0.0760* | |
H22 | 0.08690 | 0.44830 | 0.06750 | 0.0640* | |
H23A | 0.29340 | 0.02450 | 0.28260 | 0.1440* | |
H23B | 0.37970 | 0.07580 | 0.20090 | 0.1440* | |
H23C | 0.21960 | −0.00150 | 0.17020 | 0.1440* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0434 (4) | 0.0409 (4) | 0.0391 (4) | −0.0068 (2) | 0.0078 (2) | −0.0072 (2) |
S2 | 0.0505 (4) | 0.0388 (4) | 0.0338 (3) | −0.0013 (3) | 0.0122 (2) | −0.0017 (2) |
F1 | 0.139 (3) | 0.308 (6) | 0.117 (2) | −0.066 (3) | 0.069 (2) | −0.115 (3) |
F2 | 0.122 (2) | 0.206 (3) | 0.0717 (15) | −0.084 (2) | 0.0018 (13) | −0.0583 (17) |
F3 | 0.259 (5) | 0.185 (4) | 0.094 (2) | −0.070 (3) | −0.066 (3) | 0.061 (2) |
O1 | 0.0533 (10) | 0.0744 (14) | 0.0421 (10) | −0.0183 (9) | 0.0034 (8) | −0.0186 (9) |
O2 | 0.0747 (12) | 0.0635 (12) | 0.0331 (9) | 0.0219 (10) | 0.0038 (8) | 0.0065 (8) |
O3 | 0.0721 (12) | 0.0507 (11) | 0.0633 (12) | −0.0208 (9) | 0.0352 (10) | −0.0118 (9) |
N1 | 0.0501 (11) | 0.0462 (12) | 0.0438 (11) | −0.0070 (9) | 0.0098 (9) | −0.0036 (9) |
N2 | 0.0426 (10) | 0.0418 (11) | 0.0339 (10) | −0.0063 (8) | 0.0092 (8) | −0.0078 (8) |
N3 | 0.0418 (10) | 0.0427 (11) | 0.0338 (10) | −0.0023 (8) | 0.0087 (8) | −0.0032 (8) |
C1 | 0.0346 (11) | 0.0383 (13) | 0.0386 (12) | −0.0019 (9) | 0.0054 (9) | −0.0037 (9) |
C2 | 0.0505 (14) | 0.0557 (16) | 0.0422 (13) | −0.0100 (12) | 0.0037 (11) | −0.0098 (11) |
C3 | 0.0480 (14) | 0.0624 (18) | 0.0596 (17) | −0.0157 (13) | −0.0031 (12) | −0.0074 (13) |
C4 | 0.0434 (14) | 0.0596 (18) | 0.0630 (17) | −0.0142 (12) | 0.0072 (12) | 0.0062 (13) |
C5 | 0.0453 (13) | 0.0576 (17) | 0.0474 (14) | −0.0037 (12) | 0.0122 (11) | 0.0035 (12) |
C6 | 0.0349 (11) | 0.0380 (13) | 0.0402 (12) | 0.0012 (9) | 0.0051 (9) | −0.0012 (9) |
C7 | 0.0382 (11) | 0.0345 (12) | 0.0337 (11) | 0.0033 (9) | 0.0041 (9) | −0.0052 (9) |
C8 | 0.0421 (12) | 0.0397 (13) | 0.0391 (12) | −0.0046 (10) | 0.0050 (10) | −0.0058 (10) |
C9 | 0.0373 (11) | 0.0373 (13) | 0.0393 (12) | 0.0038 (10) | 0.0018 (9) | −0.0032 (9) |
C10 | 0.0354 (11) | 0.0415 (13) | 0.0414 (13) | 0.0004 (10) | 0.0025 (9) | −0.0026 (10) |
C11 | 0.0372 (12) | 0.0434 (14) | 0.0399 (12) | 0.0016 (10) | −0.0017 (9) | −0.0068 (10) |
C12 | 0.0426 (13) | 0.0429 (14) | 0.0496 (14) | −0.0042 (10) | 0.0022 (11) | −0.0040 (11) |
C13 | 0.0526 (14) | 0.0480 (15) | 0.0482 (14) | −0.0080 (12) | 0.0125 (11) | −0.0008 (11) |
C14 | 0.0582 (16) | 0.074 (2) | 0.0444 (15) | −0.0148 (14) | 0.0081 (12) | −0.0046 (13) |
C15 | 0.0489 (14) | 0.0590 (18) | 0.0558 (16) | −0.0104 (13) | −0.0002 (12) | −0.0147 (13) |
C16 | 0.084 (2) | 0.116 (3) | 0.057 (2) | −0.039 (2) | 0.0053 (18) | −0.025 (2) |
C17 | 0.0359 (11) | 0.0426 (13) | 0.0349 (11) | 0.0001 (9) | 0.0051 (9) | −0.0004 (9) |
C18 | 0.0425 (12) | 0.0534 (16) | 0.0389 (13) | −0.0009 (11) | 0.0068 (10) | 0.0041 (11) |
C19 | 0.0399 (13) | 0.0563 (17) | 0.0666 (18) | 0.0007 (12) | 0.0081 (12) | 0.0198 (14) |
C20 | 0.0427 (14) | 0.0437 (16) | 0.093 (2) | 0.0019 (11) | 0.0202 (14) | 0.0095 (15) |
C21 | 0.0745 (19) | 0.0541 (18) | 0.0675 (19) | 0.0144 (15) | 0.0257 (15) | −0.0066 (14) |
C22 | 0.0694 (17) | 0.0555 (17) | 0.0374 (13) | 0.0129 (14) | 0.0126 (12) | −0.0010 (11) |
C23 | 0.093 (3) | 0.050 (2) | 0.160 (4) | 0.0240 (19) | 0.052 (3) | 0.022 (2) |
S1—C7 | 1.742 (2) | C15—C16 | 1.458 (5) |
S1—C8 | 1.814 (2) | C17—C18 | 1.378 (3) |
S2—O2 | 1.4256 (18) | C17—C22 | 1.386 (3) |
S2—O3 | 1.424 (2) | C18—C19 | 1.377 (4) |
S2—N2 | 1.669 (2) | C19—C20 | 1.378 (5) |
S2—C17 | 1.755 (3) | C20—C21 | 1.394 (5) |
F1—C16 | 1.311 (6) | C20—C23 | 1.507 (5) |
F2—C16 | 1.318 (6) | C21—C22 | 1.374 (4) |
F3—C16 | 1.279 (6) | C2—H2 | 0.9300 |
O1—C11 | 1.366 (3) | C3—H3 | 0.9300 |
O1—C15 | 1.412 (3) | C4—H4 | 0.9300 |
N1—C9 | 1.344 (3) | C5—H5 | 0.9300 |
N1—C13 | 1.327 (3) | C8—H8A | 0.9700 |
N2—C1 | 1.408 (3) | C8—H8B | 0.9700 |
N2—C7 | 1.418 (3) | C12—H12 | 0.9300 |
N3—C6 | 1.396 (3) | C13—H13 | 0.9300 |
N3—C7 | 1.303 (3) | C14—H14A | 0.9600 |
C1—C2 | 1.381 (3) | C14—H14B | 0.9600 |
C1—C6 | 1.393 (3) | C14—H14C | 0.9600 |
C2—C3 | 1.384 (4) | C15—H15A | 0.9700 |
C3—C4 | 1.391 (4) | C15—H15B | 0.9700 |
C4—C5 | 1.380 (4) | C18—H18 | 0.9300 |
C5—C6 | 1.387 (4) | C19—H19 | 0.9300 |
C8—C9 | 1.506 (3) | C21—H21 | 0.9300 |
C9—C10 | 1.396 (3) | C22—H22 | 0.9300 |
C10—C11 | 1.399 (4) | C23—H23A | 0.9600 |
C10—C14 | 1.501 (4) | C23—H23B | 0.9600 |
C11—C12 | 1.377 (4) | C23—H23C | 0.9600 |
C12—C13 | 1.374 (4) | ||
C7—S1—C8 | 97.78 (12) | C18—C19—C20 | 121.4 (3) |
O2—S2—O3 | 119.76 (12) | C19—C20—C21 | 118.7 (3) |
O2—S2—N2 | 107.33 (10) | C19—C20—C23 | 121.0 (4) |
O2—S2—C17 | 108.93 (11) | C21—C20—C23 | 120.3 (4) |
O3—S2—N2 | 105.97 (11) | C20—C21—C22 | 120.8 (3) |
O3—S2—C17 | 109.92 (11) | C17—C22—C21 | 119.1 (2) |
N2—S2—C17 | 103.68 (10) | C1—C2—H2 | 122.00 |
C11—O1—C15 | 117.2 (2) | C3—C2—H2 | 122.00 |
C9—N1—C13 | 117.5 (2) | C2—C3—H3 | 119.00 |
S2—N2—C1 | 122.71 (16) | C4—C3—H3 | 119.00 |
S2—N2—C7 | 129.85 (15) | C3—C4—H4 | 119.00 |
C1—N2—C7 | 105.71 (17) | C5—C4—H4 | 119.00 |
C6—N3—C7 | 105.98 (18) | C4—C5—H5 | 121.00 |
N2—C1—C2 | 131.7 (2) | C6—C5—H5 | 121.00 |
N2—C1—C6 | 105.12 (19) | S1—C8—H8A | 110.00 |
C2—C1—C6 | 123.2 (2) | S1—C8—H8B | 110.00 |
C1—C2—C3 | 116.4 (2) | C9—C8—H8A | 110.00 |
C2—C3—C4 | 121.2 (3) | C9—C8—H8B | 110.00 |
C3—C4—C5 | 121.9 (3) | H8A—C8—H8B | 108.00 |
C4—C5—C6 | 117.7 (2) | C11—C12—H12 | 121.00 |
N3—C6—C1 | 110.94 (19) | C13—C12—H12 | 121.00 |
N3—C6—C5 | 129.4 (2) | N1—C13—H13 | 118.00 |
C1—C6—C5 | 119.7 (2) | C12—C13—H13 | 118.00 |
S1—C7—N2 | 121.46 (15) | C10—C14—H14A | 109.00 |
S1—C7—N3 | 126.22 (17) | C10—C14—H14B | 109.00 |
N2—C7—N3 | 112.24 (18) | C10—C14—H14C | 109.00 |
S1—C8—C9 | 108.03 (17) | H14A—C14—H14B | 109.00 |
N1—C9—C8 | 115.2 (2) | H14A—C14—H14C | 109.00 |
N1—C9—C10 | 123.44 (19) | H14B—C14—H14C | 110.00 |
C8—C9—C10 | 121.35 (19) | O1—C15—H15A | 110.00 |
C9—C10—C11 | 116.4 (2) | O1—C15—H15B | 110.00 |
C9—C10—C14 | 122.4 (2) | C16—C15—H15A | 110.00 |
C11—C10—C14 | 121.2 (2) | C16—C15—H15B | 110.00 |
O1—C11—C10 | 115.5 (2) | H15A—C15—H15B | 108.00 |
O1—C11—C12 | 123.8 (2) | C17—C18—H18 | 121.00 |
C10—C11—C12 | 120.8 (2) | C19—C18—H18 | 121.00 |
C11—C12—C13 | 117.5 (3) | C18—C19—H19 | 119.00 |
N1—C13—C12 | 124.4 (3) | C20—C19—H19 | 119.00 |
O1—C15—C16 | 108.1 (3) | C20—C21—H21 | 120.00 |
F1—C16—F2 | 106.4 (4) | C22—C21—H21 | 120.00 |
F1—C16—F3 | 106.5 (4) | C17—C22—H22 | 120.00 |
F1—C16—C15 | 112.6 (4) | C21—C22—H22 | 120.00 |
F2—C16—F3 | 106.4 (4) | C20—C23—H23A | 109.00 |
F2—C16—C15 | 110.7 (3) | C20—C23—H23B | 109.00 |
F3—C16—C15 | 113.7 (4) | C20—C23—H23C | 109.00 |
S2—C17—C18 | 121.46 (19) | H23A—C23—H23B | 110.00 |
S2—C17—C22 | 117.46 (19) | H23A—C23—H23C | 109.00 |
C18—C17—C22 | 121.0 (3) | H23B—C23—H23C | 109.00 |
C17—C18—C19 | 119.0 (2) | ||
C8—S1—C7—N2 | 176.89 (17) | N2—C1—C6—N3 | 0.4 (2) |
C8—S1—C7—N3 | 0.4 (2) | N2—C1—C6—C5 | 179.2 (2) |
C7—S1—C8—C9 | −177.25 (16) | C2—C1—C6—N3 | −179.6 (2) |
O2—S2—N2—C1 | 53.2 (2) | C2—C1—C6—C5 | −0.7 (4) |
O2—S2—N2—C7 | −143.98 (19) | C1—C2—C3—C4 | 0.3 (4) |
O3—S2—N2—C1 | −177.76 (17) | C2—C3—C4—C5 | −0.7 (4) |
O3—S2—N2—C7 | −14.9 (2) | C3—C4—C5—C6 | 0.4 (4) |
C17—S2—N2—C1 | −62.02 (19) | C4—C5—C6—N3 | 178.9 (3) |
C17—S2—N2—C7 | 100.8 (2) | C4—C5—C6—C1 | 0.3 (4) |
O2—S2—C17—C18 | −143.1 (2) | S1—C8—C9—N1 | 3.6 (2) |
O2—S2—C17—C22 | 40.0 (2) | S1—C8—C9—C10 | −175.61 (17) |
O3—S2—C17—C18 | 83.9 (2) | N1—C9—C10—C11 | −1.4 (3) |
O3—S2—C17—C22 | −93.1 (2) | N1—C9—C10—C14 | 178.8 (2) |
N2—S2—C17—C18 | −29.0 (2) | C8—C9—C10—C11 | 177.7 (2) |
N2—S2—C17—C22 | 154.01 (19) | C8—C9—C10—C14 | −2.0 (4) |
C15—O1—C11—C10 | 173.1 (2) | C9—C10—C11—O1 | −177.8 (2) |
C15—O1—C11—C12 | −5.6 (4) | C9—C10—C11—C12 | 1.0 (4) |
C11—O1—C15—C16 | −166.7 (3) | C14—C10—C11—O1 | 2.0 (4) |
C13—N1—C9—C8 | −178.1 (2) | C14—C10—C11—C12 | −179.3 (3) |
C13—N1—C9—C10 | 1.1 (3) | O1—C11—C12—C13 | 178.4 (3) |
C9—N1—C13—C12 | −0.3 (4) | C10—C11—C12—C13 | −0.3 (4) |
S2—N2—C1—C2 | −13.5 (3) | C11—C12—C13—N1 | −0.1 (4) |
S2—N2—C1—C6 | 166.61 (16) | O1—C15—C16—F1 | −63.2 (5) |
C7—N2—C1—C2 | −179.9 (2) | O1—C15—C16—F2 | 177.9 (3) |
C7—N2—C1—C6 | 0.2 (2) | O1—C15—C16—F3 | 58.1 (5) |
S2—N2—C7—S1 | 17.2 (3) | S2—C17—C18—C19 | −176.2 (2) |
S2—N2—C7—N3 | −165.81 (16) | C22—C17—C18—C19 | 0.7 (4) |
C1—N2—C7—S1 | −177.72 (14) | S2—C17—C22—C21 | 176.0 (2) |
C1—N2—C7—N3 | −0.8 (2) | C18—C17—C22—C21 | −1.1 (4) |
C7—N3—C6—C1 | −0.8 (3) | C17—C18—C19—C20 | 0.1 (4) |
C7—N3—C6—C5 | −179.5 (3) | C18—C19—C20—C21 | −0.5 (4) |
C6—N3—C7—S1 | 177.75 (17) | C18—C19—C20—C23 | 178.8 (3) |
C6—N3—C7—N2 | 1.0 (2) | C19—C20—C21—C22 | 0.1 (5) |
N2—C1—C2—C3 | −179.5 (2) | C23—C20—C21—C22 | −179.2 (3) |
C6—C1—C2—C3 | 0.4 (4) | C20—C21—C22—C17 | 0.7 (5) |
Cg1 is the centroid of the imidazole ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···F2i | 0.93 | 2.49 | 3.363 (4) | 156 |
C15—H15B···O3ii | 0.97 | 2.52 | 3.420 (3) | 155 |
C18—H18···N3iii | 0.93 | 2.60 | 3.336 (3) | 136 |
C18—H18···Cg1 | 0.93 | 2.83 | 3.463 (3) | 126 |
Symmetry codes: (i) x−1, y−1, z−1; (ii) −x+1, −y+2, −z+1; (iii) −x, −y+1, −z+1. |
Cg1 is the centroid of the imidazole ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C2—H2···F2i | 0.93 | 2.49 | 3.363 (4) | 156 |
C15—H15B···O3ii | 0.97 | 2.52 | 3.420 (3) | 155 |
C18—H18···N3iii | 0.93 | 2.60 | 3.336 (3) | 136 |
C18—H18···Cg1 | 0.93 | 2.83 | 3.463 (3) | 126 |
Symmetry codes: (i) x−1, y−1, z−1; (ii) −x+1, −y+2, −z+1; (iii) −x, −y+1, −z+1. |
Acknowledgements
The authors are thankful to the IOE, University of Mysore, for providing the single-crystal X-ray diffraction facility.
References
Ates-Alagoz, Z., Can-Eke, B., Coban, T., Iscan, M. & Buyukbingol, E. (2004). Arch. Pharm. 337 188–192. CAS Google Scholar
Bansal, Y. & Silakari, O. (2012). Bioorg. Med. Chem. 20, 6208-6236. Web of Science CrossRef CAS PubMed Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555-1573. CrossRef CAS Web of Science Google Scholar
Bruker (2013). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The benzimidazole derivatives acts as antioxidant (Ates-Alagoz et al., 2004) and show biological activities (Bansal & Silakari, 2012).
The ORTEP of the title molecules is shown in figure 1. the benzoimidazole moiety (N2-N3/C1-C7) makes a dihedral angle of 5.02 (1)° and 76.42 (1)° with pyridin ring (N1/C9-C13) and phenyl ring (C17-C22), respectively. The dihedral angle betwen the pyridin ring and phenyl moiety is 72.19 (1)°.
The molecules in the crystal structure are connected with C—H···F, C—H···O, C—H···N and C—H···O intermolecular hydrogen bonds (Fig. 2 & Table 1). The C2—H2···F2 forms infinite chains along b-axis. C15—H15B···O3 shows R22(26) ring motif while C18—H18···N3 shows R22(14) ring motif (Bernstein et al., 1995). Also, short contacts C—H···π and π···π [centroid-centroid distance of 3.6485 (14) Å] is observed. Overall packing of molecules depicts three dimesional architecture. All the above interactions of the molecule generates three-dimensional architecture (Fig. 2).