organic compounds
2-(6-Hydroxy-1-benzofuran-3-yl)acetamide
aDepartment of Studies and Research in Chemistry, Tumkur University, Tumkur, Karnataka 572 103, India, bDepartment of Studies in Physics, University of Mysore, Manasagangotri, Mysore, India, and cDepartment of Studies and Research in Chemistry,U.C.S, Tumkur University, Tumkur, Karnataka 572 103, India
*Correspondence e-mail: pasuchetan@yahoo.co.in
In the title compound, C10H9NO3, the dihedral angle between the benzofuran ring system (r.m.s. deviation for the non-H atoms = 0.009 Å) and the –C—C(O)—N– segment is 83.76 (1)°. In the crystal, molecules are linked by N—H⋯O and O—H⋯O hydrogen bonds, generating (001) sheets, which feature C(4) and C(10) chains.
CCDC reference: 976208
Related literature
For a related structure and background to benzofurans, see: Arunakumar et al. (2014).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.
Supporting information
CCDC reference: 976208
https://doi.org/10.1107/S1600536813033436/hb7172sup1.cif
contains datablocks I, New_Global_Publ_Block. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813033436/hb7172Isup2.hkl
(6-Hydroxy-1-benzofuran-3-yl)acetic acid (0.015 mmol) was taken in a round bottom flask containing N,N-dimethyl formamide (15 ml)·To this 1, 1-carbonydiimadazole (0.023 mmol) was added at 273 K. The reaction mixture was stirred for 45 minutes. Ammonium acetate (0.046 mmol) and triethyl amine (1 ml) were added, the reaction mixture was stirred at room temperature overnight. The completion of the reaction was monitored by thin layer
After completion of the reaction, the reaction mixture was diluted with ethylacetate and the organic layer was washed with water followed by brine solution. The organic layer was dried over anhydrous sodium sulfate and concentrated to give the crude product. It was further purified by by using Ethyl acetate and petroleum ether (8:2) as eluent.Colourless prisms were obtained from the solvent system: ethyl acetate / methanol (4:1) at room temperature.
The H atoms were positioned with idealized geometry using a riding model with C—H = 0.93–0.97 Å and O—H = 0.82 Å. The H atoms of the NH2 group were located in a difference map and later refined freely. The isotropic displacement parameters for all H atoms were set to 1.2 times Ueq (Carbon) and 1.5 times Ueq (Oxygen)..
As part of our ongoing structural studies of functionalsied benzofuran ring systems at the C-2 position (Arunakumar et al., 2014), we now describe the structure of the title compound, (I).
In the title compound, C10H9NO3, the benzofuran ring is almost planar ((r.m.s. deviation for the non-H atoms = 0.009 Å) (Fig. 1). The dihedral angle between the the two planes defined by the benzofuran ring and the –C—C(O)—N– segment is 96.24 (1)°. Compared to this, the dihedral angle between the benzofuran ring and the –C—C—N—O segment in the related structure (Arunakumar et al., 2014) is 2.85 (1)°. In the
the molecules are linked to one another through strong N1—H1N···O3 and N1—H2N···O1 hydrogen bonds generating C(4) and C(10) chains (Fig. 2). The molecules are further connected into C(10) chains through strong O3—HO3···O1 hydrogen bonds forming helical structure (Fig. 3). Linking of molecules in zig zag pattern through N1—H1N···O3 H-bonds is shown in Fig. 4.For a related structure and background to benzofurans, see: Arunakumar et al. (2014).
Data collection: APEX2 (Bruker, 2009); cell
SAINT-Plus (Bruker, 2009); data reduction: SAINT-Plus and XPREP (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Molecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. | |
Fig. 2. Linking of molecules in the crystal structure through N—H···O hydrogen bonds into C(4) and C(10) chains. H-atoms not involved in H-bonding are omitted for clarity. | |
Fig. 3. Formation of helical structure through O—H···O hydrogen bonds. | |
Fig. 4. Zig-zag pattern observed in the crystal structure. |
C10H9NO3 | Prism |
Mr = 191.18 | Dx = 1.421 Mg m−3 |
Orthorhombic, P212121 | Melting point: 533 K |
Hall symbol: P 2ac 2ab | Cu Kα radiation, λ = 1.54178 Å |
a = 5.0939 (3) Å | Cell parameters from 1234 reflections |
b = 9.3629 (5) Å | θ = 4.7–64.3° |
c = 18.7422 (10) Å | µ = 0.89 mm−1 |
V = 893.88 (9) Å3 | T = 293 K |
Z = 4 | Prism, colourless |
F(000) = 400 | 0.36 × 0.29 × 0.24 mm |
Bruker APEXII CCD diffractometer | 1459 independent reflections |
Radiation source: fine-focus sealed tube | 1446 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
φ and ω scans | θmax = 64.3°, θmin = 4.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −5→5 |
Tmin = 0.770, Tmax = 0.808 | k = −10→10 |
8714 measured reflections | l = −21→21 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | w = 1/[σ2(Fo2) + (0.0488P)2 + 0.1043P] where P = (Fo2 + 2Fc2)/3 |
S = 1.14 | (Δ/σ)max < 0.001 |
1459 reflections | Δρmax = 0.15 e Å−3 |
136 parameters | Δρmin = −0.28 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 1927 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.2 (2) |
C10H9NO3 | V = 893.88 (9) Å3 |
Mr = 191.18 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 5.0939 (3) Å | µ = 0.89 mm−1 |
b = 9.3629 (5) Å | T = 293 K |
c = 18.7422 (10) Å | 0.36 × 0.29 × 0.24 mm |
Bruker APEXII CCD diffractometer | 1459 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 1446 reflections with I > 2σ(I) |
Tmin = 0.770, Tmax = 0.808 | Rint = 0.036 |
8714 measured reflections |
R[F2 > 2σ(F2)] = 0.033 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.081 | Δρmax = 0.15 e Å−3 |
S = 1.14 | Δρmin = −0.28 e Å−3 |
1459 reflections | Absolute structure: Flack (1983), 1927 Friedel pairs |
136 parameters | Absolute structure parameter: −0.2 (2) |
0 restraints |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
H2N | 0.766 (5) | 0.410 (3) | 0.6264 (14) | 0.072 (7)* | |
H1N | 0.587 (5) | 0.324 (3) | 0.5742 (14) | 0.069 (7)* | |
C1 | 0.4600 (3) | 1.02627 (16) | 0.55047 (8) | 0.0361 (4) | |
C2 | 0.6218 (3) | 0.90706 (18) | 0.54019 (9) | 0.0404 (4) | |
H2 | 0.7494 | 0.9092 | 0.5047 | 0.049* | |
C3 | 0.5949 (3) | 0.78677 (18) | 0.58188 (8) | 0.0402 (4) | |
H3 | 0.7026 | 0.7079 | 0.5747 | 0.048* | |
C4 | 0.4029 (3) | 0.78533 (16) | 0.63518 (7) | 0.0334 (3) | |
C5 | 0.2448 (3) | 0.90548 (17) | 0.64295 (8) | 0.0369 (4) | |
C6 | 0.2657 (3) | 1.02782 (17) | 0.60204 (9) | 0.0398 (4) | |
H6 | 0.1562 | 1.1061 | 0.6088 | 0.048* | |
C7 | 0.1208 (4) | 0.75102 (19) | 0.72418 (8) | 0.0452 (4) | |
H7 | 0.0293 | 0.7101 | 0.7619 | 0.054* | |
C8 | 0.3173 (3) | 0.68572 (17) | 0.68946 (8) | 0.0370 (4) | |
C9 | 0.4300 (3) | 0.54149 (18) | 0.70437 (8) | 0.0406 (4) | |
H9A | 0.3482 | 0.5023 | 0.7468 | 0.049* | |
H9B | 0.6166 | 0.5506 | 0.7136 | 0.049* | |
C10 | 0.3882 (3) | 0.44027 (15) | 0.64264 (8) | 0.0331 (3) | |
N1 | 0.5982 (3) | 0.38614 (19) | 0.61193 (9) | 0.0492 (4) | |
O1 | 0.1637 (2) | 0.41077 (13) | 0.62188 (6) | 0.0433 (3) | |
O2 | 0.0692 (2) | 0.88620 (13) | 0.69762 (6) | 0.0473 (3) | |
O3 | 0.4914 (2) | 1.14862 (11) | 0.51112 (6) | 0.0454 (3) | |
HO3 | 0.5821 | 1.1314 | 0.4760 | 0.068* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0386 (8) | 0.0371 (8) | 0.0326 (7) | −0.0049 (6) | −0.0004 (6) | −0.0042 (6) |
C2 | 0.0363 (9) | 0.0486 (9) | 0.0364 (7) | −0.0001 (7) | 0.0078 (7) | −0.0003 (6) |
C3 | 0.0371 (9) | 0.0440 (8) | 0.0396 (8) | 0.0048 (7) | 0.0066 (7) | −0.0023 (6) |
C4 | 0.0306 (8) | 0.0402 (8) | 0.0294 (7) | −0.0038 (6) | 0.0006 (6) | −0.0059 (6) |
C5 | 0.0334 (8) | 0.0444 (8) | 0.0328 (7) | −0.0052 (7) | 0.0050 (6) | −0.0093 (6) |
C6 | 0.0381 (9) | 0.0395 (8) | 0.0417 (8) | 0.0015 (7) | 0.0042 (7) | −0.0081 (7) |
C7 | 0.0499 (10) | 0.0505 (9) | 0.0353 (8) | −0.0090 (8) | 0.0103 (7) | −0.0037 (7) |
C8 | 0.0375 (9) | 0.0449 (8) | 0.0287 (7) | −0.0085 (7) | 0.0000 (7) | −0.0056 (6) |
C9 | 0.0411 (9) | 0.0495 (9) | 0.0312 (7) | −0.0058 (7) | −0.0054 (7) | 0.0026 (6) |
C10 | 0.0296 (8) | 0.0377 (7) | 0.0320 (7) | −0.0027 (6) | −0.0021 (6) | 0.0070 (6) |
N1 | 0.0320 (8) | 0.0597 (9) | 0.0559 (9) | −0.0004 (7) | 0.0012 (7) | −0.0097 (8) |
O1 | 0.0290 (6) | 0.0567 (7) | 0.0444 (6) | −0.0025 (5) | −0.0029 (5) | −0.0082 (5) |
O2 | 0.0476 (7) | 0.0508 (7) | 0.0434 (6) | −0.0008 (6) | 0.0187 (5) | −0.0079 (5) |
O3 | 0.0537 (8) | 0.0405 (6) | 0.0419 (6) | −0.0003 (5) | 0.0081 (5) | 0.0008 (5) |
C1—O3 | 1.3717 (19) | C7—C8 | 1.341 (2) |
C1—C6 | 1.383 (2) | C7—O2 | 1.385 (2) |
C1—C2 | 1.401 (2) | C7—H7 | 0.9300 |
C2—C3 | 1.378 (2) | C8—C9 | 1.494 (2) |
C2—H2 | 0.9300 | C9—C10 | 1.511 (2) |
C3—C4 | 1.398 (2) | C9—H9A | 0.9700 |
C3—H3 | 0.9300 | C9—H9B | 0.9700 |
C4—C5 | 1.391 (2) | C10—O1 | 1.2390 (19) |
C4—C8 | 1.447 (2) | C10—N1 | 1.317 (2) |
C5—O2 | 1.372 (2) | N1—H2N | 0.92 (3) |
C5—C6 | 1.382 (2) | N1—H1N | 0.92 (3) |
C6—H6 | 0.9300 | O3—HO3 | 0.8200 |
O3—C1—C6 | 116.76 (14) | C8—C7—H7 | 123.7 |
O3—C1—C2 | 121.52 (14) | O2—C7—H7 | 123.7 |
C6—C1—C2 | 121.69 (15) | C7—C8—C4 | 105.80 (15) |
C3—C2—C1 | 120.98 (14) | C7—C8—C9 | 127.46 (16) |
C3—C2—H2 | 119.5 | C4—C8—C9 | 126.73 (15) |
C1—C2—H2 | 119.5 | C8—C9—C10 | 111.69 (12) |
C2—C3—C4 | 118.87 (15) | C8—C9—H9A | 109.3 |
C2—C3—H3 | 120.6 | C10—C9—H9A | 109.3 |
C4—C3—H3 | 120.6 | C8—C9—H9B | 109.3 |
C5—C4—C3 | 118.16 (14) | C10—C9—H9B | 109.3 |
C5—C4—C8 | 105.84 (13) | H9A—C9—H9B | 107.9 |
C3—C4—C8 | 136.00 (15) | O1—C10—N1 | 121.80 (15) |
O2—C5—C6 | 124.99 (15) | O1—C10—C9 | 120.70 (14) |
O2—C5—C4 | 110.44 (14) | N1—C10—C9 | 117.50 (15) |
C6—C5—C4 | 124.56 (14) | C10—N1—H2N | 121.9 (16) |
C5—C6—C1 | 115.73 (15) | C10—N1—H1N | 122.0 (17) |
C5—C6—H6 | 122.1 | H2N—N1—H1N | 116 (2) |
C1—C6—H6 | 122.1 | C5—O2—C7 | 105.37 (13) |
C8—C7—O2 | 112.56 (14) | C1—O3—HO3 | 109.5 |
O3—C1—C2—C3 | 177.50 (15) | O2—C7—C8—C4 | −0.22 (19) |
C6—C1—C2—C3 | −0.7 (3) | O2—C7—C8—C9 | 178.51 (14) |
C1—C2—C3—C4 | −0.2 (2) | C5—C4—C8—C7 | 0.25 (17) |
C2—C3—C4—C5 | 0.9 (2) | C3—C4—C8—C7 | 179.59 (18) |
C2—C3—C4—C8 | −178.39 (17) | C5—C4—C8—C9 | −178.49 (14) |
C3—C4—C5—O2 | −179.68 (13) | C3—C4—C8—C9 | 0.8 (3) |
C8—C4—C5—O2 | −0.21 (17) | C7—C8—C9—C10 | 116.36 (19) |
C3—C4—C5—C6 | −0.8 (2) | C4—C8—C9—C10 | −65.2 (2) |
C8—C4—C5—C6 | 178.69 (15) | C8—C9—C10—O1 | −59.9 (2) |
O2—C5—C6—C1 | 178.69 (15) | C8—C9—C10—N1 | 119.67 (16) |
C4—C5—C6—C1 | −0.1 (2) | C6—C5—O2—C7 | −178.81 (16) |
O3—C1—C6—C5 | −177.48 (14) | C4—C5—O2—C7 | 0.08 (17) |
C2—C1—C6—C5 | 0.8 (2) | C8—C7—O2—C5 | 0.09 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—HO3···O1i | 0.82 | 1.92 | 2.7006 (16) | 158 |
N1—H1N···O3ii | 0.92 (3) | 2.08 (3) | 2.969 (2) | 162 (2) |
N1—H2N···O1iii | 0.92 (3) | 2.03 (3) | 2.8958 (18) | 156 (2) |
Symmetry codes: (i) x+1/2, −y+3/2, −z+1; (ii) x, y−1, z; (iii) x+1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—HO3···O1i | 0.82 | 1.92 | 2.7006 (16) | 158 |
N1—H1N···O3ii | 0.92 (3) | 2.08 (3) | 2.969 (2) | 162 (2) |
N1—H2N···O1iii | 0.92 (3) | 2.03 (3) | 2.8958 (18) | 156 (2) |
Symmetry codes: (i) x+1/2, −y+3/2, −z+1; (ii) x, y−1, z; (iii) x+1, y, z. |
Acknowledgements
The authors acknowledge the IOE X-ray diffractometer Facility, University of Mysore, Mysore, for the data collection.
References
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As part of our ongoing structural studies of functionalsied benzofuran ring systems at the C-2 position (Arunakumar et al., 2014), we now describe the structure of the title compound, (I).
In the title compound, C10H9NO3, the benzofuran ring is almost planar ((r.m.s. deviation for the non-H atoms = 0.009 Å) (Fig. 1). The dihedral angle between the the two planes defined by the benzofuran ring and the –C—C(O)—N– segment is 96.24 (1)°. Compared to this, the dihedral angle between the benzofuran ring and the –C—C—N—O segment in the related structure (Arunakumar et al., 2014) is 2.85 (1)°. In the crystal structure, the molecules are linked to one another through strong N1—H1N···O3 and N1—H2N···O1 hydrogen bonds generating C(4) and C(10) chains (Fig. 2). The molecules are further connected into C(10) chains through strong O3—HO3···O1 hydrogen bonds forming helical structure (Fig. 3). Linking of molecules in zig zag pattern through N1—H1N···O3 H-bonds is shown in Fig. 4.