organic compounds
4,4-Difluoro-2,3;5,6-bis(tetramethylene)-4-bora-3a,4a-diaza-s-indacene (LD540)
aDepartment of Chemistry, Nanoscience Center, University of Jyväskylä, PO Box 35, FIN-40014 University of Jyväskylä, Finland
*Correspondence e-mail: tanja.m.lahtinen@jyu.fi
The title compound, C18H21BF2N2, is a lipophilic dye based on a BODIPY fluorophore backbone, which was developed for microscopic imaging of lipid droplets; the molecule has a planar BODIPY core [dihedral angle between the pyrrole rings = 2.3 (3)°] and two tetramethylene substituents at the 2,3- and 5,6-positions in a half-chair conformation. One of the tetramethylene substituents is disordered over two two sets of sites with site occupancies of 0.5. In the crystal, pairs of C—H⋯F interactions link the molecules into inversion dimers. Neighbouring dimers are linked by further C—H⋯F interactions, forming an infinite array. C—H⋯π and π–π [centroid–centroid distance = 4.360 (3) Å] interactions are observed between the BODIPY core and the tetramethylene substituents of neighbouring dimer pairs.
CCDC reference: 976242
Related literature
For lipid droplets and fluorescence imaging with LD540, see: Beller et al. (2010); Bickel et al. (2009); Spandl et al. (2009). For related BODIPY structures, see: Uppal et al. (2012).
Experimental
Crystal data
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Data collection: COLLECT (Bruker, 2004); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2.
Supporting information
CCDC reference: 976242
https://doi.org/10.1107/S1600536813033448/vm2201sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536813033448/vm2201Isup2.hkl
Supporting information file. DOI: https://doi.org/10.1107/S1600536813033448/vm2201Isup3.mol
The title compound was synthesized by a known method described by Christoph Thiele and co-workers (Spandl et al., 2009) using tetrahydropyrrole, acetylchloride and BF3-etherate as the starting material. For single-crystal X-ray analysis the crude product was recrystallized from dichloromethane yielding greenish red prism crystals.
All H atoms were visible in the electron density maps, but those bonded to C were ideally positioned and allowed to ride on their parent atoms with Uiso(H) of 1.2 (or 1.5 for methyl) times Ueq(C). One of the tetramethylene substituent is disordered over two positions (C18—C19) having fixed site occupation factors of 0.5.
Lipid droplets are metabolically active π interactions [C18A—H18A···Cg1i = 2.812 Å and C17—H17A···Cg2ii = 3.103 Å; Cg1 and Cg2 are the centroids of rings N4,C5,C10-C12 and N22,C21,C14-C16, respectively; symmetry codes: (i) x + 1, y, z; (ii) -x, -y + 1, -z + 1] and π···π interactions [Cg2···Cg2iii = 4.360 (3) Å; symmetry code: (iii) -x + 1, -y + 1, -z +1] are observed between the BODIPY core and the tetramethylene substituents of the neighbouring dimer pairs.
(Beller et al., 2010; Bickel et al., 2009), which function as intracellular storehouses of lipid found inside almost all cells. LD540 is one of the dyes that can be used for multicolor fluorescence imaging for lipid droplets in both fixed and living cells (Spandl et al., 2009). In the structure of the title compound, the BODIPY core is planar having the average dihedral angle formed between the two pyrrole rings of 2.3 (3)° (Fig. 1). The two tetramethylene substituents on either side of the BODIPY core at the 2,3- and 5,6-positions are in a half-chair conformation. Intermolecular F···H—C interactions (distance of 2.661 (3) Å) between the fluoride (F3) and methyl (C23) groups of the opposite facing molecules connect the two LD540 molecules to form a dimer (Fig.2, Table 2). In a similar manner, the second fluoride (F2) atom forms an intermolecular F···H—C interaction (distance of 2.555 (3) Å) to one of the CH2 (C8) groups of the tetramethylene unit connecting the neighbouring dimer pairs in an infinite array through the (Fig. 3, Table 2). In addition to the F···H—C interactions, intermolecular C—H···For lipid droplets and fluorescence imaging with LD540, see: Beller et al. (2010); Bickel et al. (2009); Spandl et al. (2009). For related BODIPY structures, see: Uppal et al. (2012).
Data collection: COLLECT (Bruker, 2004); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: OLEX2 (Dolomanov et al., 2009); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009).Fig. 1. Molecular structure of the title compound with atom labels and 50% probability displacement ellipsoids for non-H atoms. | |
Fig. 2. Dimer pair formed by the intermolecular F···H—C interactions (black dotted line) between the opposite facing molecules. | |
Fig. 3. Packing diagram showing the infinite array of dimer pairs in the crystal lattice connected by the intermolecular F···H—C interactions viewed along a) the a axis and b) from a view highlighting the aromatic interactions formed between the molecule layers. Intermolecular F···H—C interactions forming the dimer pairs have been marked with red and the ones between the dimer pairs have been marked with blue color. |
C18H21BF2N2 | F(000) = 664 |
Mr = 314.18 | Dx = 1.333 Mg m−3 |
Monoclinic, P21/n | Cu Kα radiation, λ = 1.54184 Å |
a = 8.8836 (4) Å | Cell parameters from 2349 reflections |
b = 16.467 (1) Å | θ = 0.9–62.4° |
c = 11.4865 (6) Å | µ = 0.77 mm−1 |
β = 111.271 (3)° | T = 173 K |
V = 1565.84 (15) Å3 | Prism, green red |
Z = 4 | 0.1 × 0.1 × 0.04 mm |
Nonius KappaCCD diffractometer with APEXII detector | 2511 independent reflections |
Radiation source: Enraf–Nonius FR590 | 1902 reflections with I > 2σ(I) |
Horizonally mounted graphite crystal monochromator | Rint = 0.054 |
Detector resolution: 9 pixels mm-1 | θmax = 63.3°, θmin = 4.9° |
CCD rotation images, thick slices scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | k = −19→15 |
Tmin = 0.840, Tmax = 1 | l = −11→13 |
7413 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.125 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0626P)2 + 0.2776P] where P = (Fo2 + 2Fc2)/3 |
2511 reflections | (Δ/σ)max < 0.001 |
227 parameters | Δρmax = 0.17 e Å−3 |
0 restraints | Δρmin = −0.30 e Å−3 |
C18H21BF2N2 | V = 1565.84 (15) Å3 |
Mr = 314.18 | Z = 4 |
Monoclinic, P21/n | Cu Kα radiation |
a = 8.8836 (4) Å | µ = 0.77 mm−1 |
b = 16.467 (1) Å | T = 173 K |
c = 11.4865 (6) Å | 0.1 × 0.1 × 0.04 mm |
β = 111.271 (3)° |
Nonius KappaCCD diffractometer with APEXII detector | 2511 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 1902 reflections with I > 2σ(I) |
Tmin = 0.840, Tmax = 1 | Rint = 0.054 |
7413 measured reflections |
R[F2 > 2σ(F2)] = 0.047 | 0 restraints |
wR(F2) = 0.125 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.17 e Å−3 |
2511 reflections | Δρmin = −0.30 e Å−3 |
227 parameters |
Experimental. SADABS v.2.03 (Bruker, 2004) was used for absorption correction. R(int) was 0.0552 before and 0.0509 after correction. The Ratio of minimum to maximum transmission is 0.8396. The λ/2 correction factor is 0.0015. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C5 | −0.1259 (3) | 0.36857 (12) | 0.10617 (19) | 0.0289 (5) | |
C6 | −0.1499 (3) | 0.27857 (12) | 0.0961 (2) | 0.0327 (5) | |
H6A | −0.0857 | 0.2531 | 0.1746 | 0.039* | |
H6B | −0.1142 | 0.2575 | 0.0315 | 0.039* | |
C7 | −0.3294 (3) | 0.25826 (13) | 0.0640 (2) | 0.0388 (6) | |
H7A | −0.3488 | 0.2023 | 0.0361 | 0.047* | |
H7B | −0.3557 | 0.2636 | 0.1386 | 0.047* | |
C8 | −0.4386 (3) | 0.31373 (13) | −0.0374 (2) | 0.0395 (6) | |
H8A | −0.5498 | 0.2961 | −0.0598 | 0.047* | |
H8B | −0.4103 | 0.3094 | −0.1111 | 0.047* | |
C9 | −0.4245 (3) | 0.40230 (13) | 0.0048 (2) | 0.0347 (5) | |
H9A | −0.4776 | 0.4370 | −0.0667 | 0.042* | |
H9B | −0.4780 | 0.4095 | 0.0642 | 0.042* | |
C10 | −0.2501 (2) | 0.42636 (12) | 0.06426 (19) | 0.0286 (5) | |
C11 | −0.1770 (3) | 0.50178 (12) | 0.09029 (19) | 0.0296 (5) | |
H11 | −0.2295 | 0.5517 | 0.0724 | 0.036* | |
C12 | −0.0099 (3) | 0.48998 (12) | 0.14838 (19) | 0.0282 (5) | |
C13 | 0.1168 (2) | 0.54569 (12) | 0.19475 (18) | 0.0287 (5) | |
C14 | 0.2753 (3) | 0.51881 (12) | 0.24992 (19) | 0.0291 (5) | |
C15 | 0.4217 (3) | 0.56116 (13) | 0.30543 (19) | 0.0321 (5) | |
H15 | 0.4335 | 0.6173 | 0.3117 | 0.039* | |
C16 | 0.5448 (3) | 0.50481 (13) | 0.3490 (2) | 0.0320 (5) | |
C17 | 0.7244 (3) | 0.51515 (14) | 0.4149 (2) | 0.0395 (6) | |
H17A | 0.7478 | 0.5309 | 0.5011 | 0.047* | 0.5 |
H17B | 0.7635 | 0.5576 | 0.3745 | 0.047* | 0.5 |
H17C | 0.7707 | 0.5363 | 0.3564 | 0.047* | 0.5 |
H17D | 0.7446 | 0.5543 | 0.4819 | 0.047* | 0.5 |
C18A | 0.8118 (8) | 0.4330 (5) | 0.4104 (6) | 0.0365 (15) | 0.5 |
H18A | 0.8079 | 0.4234 | 0.3260 | 0.044* | 0.5 |
H18B | 0.9244 | 0.4365 | 0.4650 | 0.044* | 0.5 |
C19A | 0.7297 (6) | 0.3617 (3) | 0.4520 (5) | 0.0322 (12) | 0.5 |
H19A | 0.7932 | 0.3126 | 0.4606 | 0.039* | 0.5 |
H19B | 0.7219 | 0.3738 | 0.5323 | 0.039* | 0.5 |
C18B | 0.8044 (9) | 0.4370 (5) | 0.4674 (6) | 0.0435 (17) | 0.5 |
H18C | 0.9193 | 0.4420 | 0.4848 | 0.052* | 0.5 |
H18D | 0.7905 | 0.4269 | 0.5460 | 0.052* | 0.5 |
C19B | 0.7418 (7) | 0.3665 (4) | 0.3843 (6) | 0.0488 (14) | 0.5 |
H19C | 0.8031 | 0.3187 | 0.4236 | 0.059* | 0.5 |
H19D | 0.7597 | 0.3757 | 0.3069 | 0.059* | 0.5 |
C20 | 0.5599 (3) | 0.34915 (14) | 0.3530 (2) | 0.0362 (5) | |
H20A | 0.5688 | 0.3252 | 0.2786 | 0.043* | 0.5 |
H20B | 0.4993 | 0.3120 | 0.3849 | 0.043* | 0.5 |
H20C | 0.5202 | 0.3118 | 0.2832 | 0.043* | 0.5 |
H20D | 0.5433 | 0.3250 | 0.4244 | 0.043* | 0.5 |
C21 | 0.4724 (2) | 0.42804 (13) | 0.32034 (19) | 0.0292 (5) | |
C23 | 0.0777 (3) | 0.63483 (12) | 0.1889 (2) | 0.0341 (5) | |
H23A | 0.0355 | 0.6480 | 0.2526 | 0.051* | |
H23B | −0.0014 | 0.6476 | 0.1084 | 0.051* | |
H23C | 0.1740 | 0.6658 | 0.2019 | 0.051* | |
B1 | 0.1873 (3) | 0.36599 (14) | 0.2105 (2) | 0.0315 (6) | |
N4 | 0.0190 (2) | 0.40608 (10) | 0.15627 (15) | 0.0280 (4) | |
N22 | 0.3114 (2) | 0.43595 (10) | 0.26012 (15) | 0.0288 (4) | |
F2 | 0.19599 (15) | 0.31382 (7) | 0.30739 (12) | 0.0441 (4) | |
F3 | 0.21955 (15) | 0.32285 (7) | 0.11765 (12) | 0.0430 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C5 | 0.0323 (12) | 0.0247 (11) | 0.0298 (11) | −0.0005 (9) | 0.0115 (9) | 0.0000 (8) |
C6 | 0.0360 (12) | 0.0236 (11) | 0.0368 (12) | −0.0002 (9) | 0.0111 (10) | −0.0019 (9) |
C7 | 0.0404 (13) | 0.0267 (12) | 0.0519 (15) | −0.0042 (10) | 0.0200 (11) | −0.0017 (10) |
C8 | 0.0315 (12) | 0.0306 (12) | 0.0544 (15) | −0.0031 (10) | 0.0134 (11) | −0.0061 (11) |
C9 | 0.0303 (12) | 0.0314 (12) | 0.0428 (13) | 0.0004 (9) | 0.0135 (10) | −0.0012 (10) |
C10 | 0.0288 (11) | 0.0260 (11) | 0.0313 (11) | 0.0024 (9) | 0.0112 (9) | −0.0001 (9) |
C11 | 0.0314 (12) | 0.0233 (10) | 0.0330 (11) | 0.0042 (9) | 0.0103 (10) | 0.0014 (9) |
C12 | 0.0324 (12) | 0.0224 (10) | 0.0292 (11) | 0.0022 (9) | 0.0104 (9) | 0.0012 (9) |
C13 | 0.0339 (12) | 0.0237 (11) | 0.0281 (11) | 0.0001 (9) | 0.0107 (9) | 0.0002 (9) |
C14 | 0.0318 (11) | 0.0243 (11) | 0.0297 (11) | 0.0003 (9) | 0.0093 (9) | 0.0012 (9) |
C15 | 0.0340 (12) | 0.0257 (11) | 0.0345 (12) | −0.0033 (9) | 0.0096 (10) | 0.0000 (9) |
C16 | 0.0300 (12) | 0.0331 (12) | 0.0319 (12) | −0.0005 (9) | 0.0099 (10) | −0.0005 (9) |
C17 | 0.0324 (12) | 0.0399 (14) | 0.0435 (14) | −0.0035 (10) | 0.0105 (11) | −0.0020 (11) |
C18A | 0.027 (3) | 0.043 (3) | 0.040 (4) | −0.001 (2) | 0.013 (3) | −0.010 (4) |
C19A | 0.030 (3) | 0.034 (3) | 0.031 (3) | 0.009 (2) | 0.009 (2) | 0.003 (2) |
C18B | 0.034 (3) | 0.047 (4) | 0.044 (4) | 0.003 (2) | 0.008 (3) | −0.002 (4) |
C19B | 0.032 (3) | 0.043 (3) | 0.063 (4) | 0.003 (2) | 0.008 (3) | −0.003 (3) |
C20 | 0.0324 (12) | 0.0321 (12) | 0.0413 (13) | 0.0045 (10) | 0.0100 (10) | 0.0010 (10) |
C21 | 0.0289 (11) | 0.0308 (12) | 0.0273 (11) | 0.0026 (9) | 0.0095 (9) | 0.0007 (9) |
C23 | 0.0353 (12) | 0.0242 (12) | 0.0384 (12) | 0.0002 (9) | 0.0081 (10) | 0.0009 (9) |
B1 | 0.0327 (14) | 0.0216 (12) | 0.0364 (13) | 0.0028 (10) | 0.0081 (11) | 0.0007 (11) |
N4 | 0.0303 (10) | 0.0214 (9) | 0.0309 (9) | 0.0006 (7) | 0.0094 (8) | 0.0004 (7) |
N22 | 0.0303 (10) | 0.0243 (9) | 0.0305 (9) | 0.0025 (7) | 0.0096 (8) | 0.0005 (7) |
F2 | 0.0377 (8) | 0.0341 (7) | 0.0515 (8) | −0.0011 (6) | 0.0055 (6) | 0.0174 (6) |
F3 | 0.0339 (7) | 0.0379 (7) | 0.0521 (8) | 0.0047 (5) | 0.0094 (6) | −0.0171 (6) |
C5—C6 | 1.496 (3) | C17—H17C | 0.9700 |
C5—C10 | 1.403 (3) | C17—H17D | 0.9700 |
C5—N4 | 1.353 (3) | C17—C18A | 1.570 (7) |
C6—H6A | 0.9700 | C17—C18B | 1.488 (8) |
C6—H6B | 0.9700 | C18A—H18A | 0.9700 |
C6—C7 | 1.538 (3) | C18A—H18B | 0.9700 |
C7—H7A | 0.9700 | C18A—C19A | 1.548 (10) |
C7—H7B | 0.9700 | C19A—H19A | 0.9700 |
C7—C8 | 1.521 (3) | C19A—H19B | 0.9700 |
C8—H8A | 0.9700 | C19A—C20 | 1.539 (6) |
C8—H8B | 0.9700 | C18B—H18C | 0.9700 |
C8—C9 | 1.527 (3) | C18B—H18D | 0.9700 |
C9—H9A | 0.9700 | C18B—C19B | 1.477 (10) |
C9—H9B | 0.9700 | C19B—H19C | 0.9700 |
C9—C10 | 1.502 (3) | C19B—H19D | 0.9700 |
C10—C11 | 1.383 (3) | C19B—C20 | 1.549 (6) |
C11—H11 | 0.9300 | C20—H20A | 0.9700 |
C11—C12 | 1.403 (3) | C20—H20B | 0.9700 |
C12—C13 | 1.399 (3) | C20—H20C | 0.9700 |
C12—N4 | 1.402 (3) | C20—H20D | 0.9700 |
C13—C14 | 1.390 (3) | C20—C21 | 1.490 (3) |
C13—C23 | 1.504 (3) | C21—N22 | 1.350 (3) |
C14—C15 | 1.408 (3) | C23—H23A | 0.9600 |
C14—N22 | 1.397 (3) | C23—H23B | 0.9600 |
C15—H15 | 0.9300 | C23—H23C | 0.9600 |
C15—C16 | 1.382 (3) | B1—N4 | 1.544 (3) |
C16—C17 | 1.507 (3) | B1—N22 | 1.553 (3) |
C16—C21 | 1.402 (3) | B1—F2 | 1.385 (3) |
C17—H17A | 0.9700 | B1—F3 | 1.395 (3) |
C17—H17B | 0.9700 | ||
H18A···Cg(1)i | 2.812 | Cg(2)···Cg(2)iii | 4.360 (3) |
H17A···Cg(2)ii | 3.103 | ||
C10—C5—C6 | 124.97 (19) | C18B—C17—H17D | 109.3 |
N4—C5—C6 | 124.87 (19) | C17—C18A—H18A | 109.6 |
N4—C5—C10 | 110.15 (18) | C17—C18A—H18B | 109.6 |
C5—C6—H6A | 109.7 | H18A—C18A—H18B | 108.1 |
C5—C6—H6B | 109.7 | C19A—C18A—C17 | 110.5 (4) |
C5—C6—C7 | 109.88 (18) | C19A—C18A—H18A | 109.6 |
H6A—C6—H6B | 108.2 | C19A—C18A—H18B | 109.6 |
C7—C6—H6A | 109.7 | C18A—C19A—H19A | 110.0 |
C7—C6—H6B | 109.7 | C18A—C19A—H19B | 110.0 |
C6—C7—H7A | 109.3 | H19A—C19A—H19B | 108.4 |
C6—C7—H7B | 109.3 | C20—C19A—C18A | 108.6 (4) |
H7A—C7—H7B | 107.9 | C20—C19A—H19A | 110.0 |
C8—C7—C6 | 111.78 (18) | C20—C19A—H19B | 110.0 |
C8—C7—H7A | 109.3 | C17—C18B—H18C | 108.8 |
C8—C7—H7B | 109.3 | C17—C18B—H18D | 108.8 |
C7—C8—H8A | 109.2 | H18C—C18B—H18D | 107.7 |
C7—C8—H8B | 109.2 | C19B—C18B—C17 | 113.9 (5) |
C7—C8—C9 | 112.01 (19) | C19B—C18B—H18C | 108.8 |
H8A—C8—H8B | 107.9 | C19B—C18B—H18D | 108.8 |
C9—C8—H8A | 109.2 | C18B—C19B—H19C | 108.7 |
C9—C8—H8B | 109.2 | C18B—C19B—H19D | 108.7 |
C8—C9—H9A | 109.6 | C18B—C19B—C20 | 114.3 (5) |
C8—C9—H9B | 109.6 | H19C—C19B—H19D | 107.6 |
H9A—C9—H9B | 108.1 | C20—C19B—H19C | 108.7 |
C10—C9—C8 | 110.42 (17) | C20—C19B—H19D | 108.7 |
C10—C9—H9A | 109.6 | C19A—C20—H20A | 109.5 |
C10—C9—H9B | 109.6 | C19A—C20—H20B | 109.5 |
C5—C10—C9 | 122.02 (18) | C19B—C20—H20C | 110.2 |
C11—C10—C5 | 106.60 (18) | C19B—C20—H20D | 110.2 |
C11—C10—C9 | 131.39 (19) | H20A—C20—H20B | 108.1 |
C10—C11—H11 | 125.9 | H20C—C20—H20D | 108.5 |
C10—C11—C12 | 108.14 (18) | C21—C20—C19A | 110.5 (3) |
C12—C11—H11 | 125.9 | C21—C20—C19B | 107.6 (3) |
C13—C12—C11 | 131.04 (19) | C21—C20—H20A | 109.5 |
C13—C12—N4 | 121.26 (18) | C21—C20—H20B | 109.5 |
N4—C12—C11 | 107.70 (17) | C21—C20—H20C | 110.2 |
C12—C13—C23 | 118.80 (19) | C21—C20—H20D | 110.2 |
C14—C13—C12 | 120.44 (19) | C16—C21—C20 | 125.0 (2) |
C14—C13—C23 | 120.71 (18) | N22—C21—C16 | 110.09 (18) |
C13—C14—C15 | 131.68 (19) | N22—C21—C20 | 124.87 (19) |
C13—C14—N22 | 120.88 (18) | C13—C23—H23A | 109.5 |
N22—C14—C15 | 107.43 (18) | C13—C23—H23B | 109.5 |
C14—C15—H15 | 125.9 | C13—C23—H23C | 109.5 |
C16—C15—C14 | 108.12 (19) | H23A—C23—H23B | 109.5 |
C16—C15—H15 | 125.9 | H23A—C23—H23C | 109.5 |
C15—C16—C17 | 131.3 (2) | H23B—C23—H23C | 109.5 |
C15—C16—C21 | 106.56 (19) | N4—B1—N22 | 106.61 (16) |
C21—C16—C17 | 122.11 (19) | F2—B1—N4 | 110.69 (18) |
C16—C17—H17A | 109.8 | F2—B1—N22 | 109.88 (18) |
C16—C17—H17B | 109.8 | F2—B1—F3 | 109.34 (17) |
C16—C17—H17C | 109.3 | F3—B1—N4 | 110.28 (18) |
C16—C17—H17D | 109.3 | F3—B1—N22 | 110.01 (18) |
C16—C17—C18A | 109.4 (3) | C5—N4—C12 | 107.41 (17) |
H17A—C17—H17B | 108.2 | C5—N4—B1 | 127.50 (17) |
H17C—C17—H17D | 108.0 | C12—N4—B1 | 125.08 (17) |
C18A—C17—H17A | 109.8 | C14—N22—B1 | 125.64 (17) |
C18A—C17—H17B | 109.8 | C21—N22—C14 | 107.80 (17) |
C18B—C17—C16 | 111.6 (3) | C21—N22—B1 | 126.57 (17) |
C18B—C17—H17C | 109.3 | ||
C5—C6—C7—C8 | 43.9 (2) | C17—C16—C21—C20 | 1.6 (3) |
C5—C10—C11—C12 | −0.4 (2) | C17—C16—C21—N22 | −179.13 (19) |
C6—C5—C10—C9 | 0.7 (3) | C17—C18A—C19A—C20 | 67.8 (6) |
C6—C5—C10—C11 | −179.60 (19) | C17—C18B—C19B—C20 | −60.8 (8) |
C6—C5—N4—C12 | −179.95 (18) | C18A—C17—C18B—C19B | −49.4 (9) |
C6—C5—N4—B1 | 1.1 (3) | C18A—C19A—C20—C19B | 41.9 (6) |
C6—C7—C8—C9 | −63.7 (3) | C18A—C19A—C20—C21 | −48.3 (5) |
C7—C8—C9—C10 | 47.5 (3) | C19A—C20—C21—C16 | 15.5 (4) |
C8—C9—C10—C5 | −17.1 (3) | C19A—C20—C21—N22 | −163.7 (3) |
C8—C9—C10—C11 | 163.3 (2) | C18B—C17—C18A—C19A | 50.6 (10) |
C9—C10—C11—C12 | 179.2 (2) | C18B—C19B—C20—C19A | −55.1 (7) |
C10—C5—C6—C7 | −14.0 (3) | C18B—C19B—C20—C21 | 45.7 (6) |
C10—C5—N4—C12 | 0.5 (2) | C19B—C20—C21—C16 | −17.3 (4) |
C10—C5—N4—B1 | −178.41 (19) | C19B—C20—C21—N22 | 163.5 (3) |
C10—C11—C12—C13 | −178.9 (2) | C20—C21—N22—C14 | 178.4 (2) |
C10—C11—C12—N4 | 0.7 (2) | C20—C21—N22—B1 | −1.6 (3) |
C11—C12—C13—C14 | 179.6 (2) | C21—C16—C17—C18A | 15.2 (4) |
C11—C12—C13—C23 | 2.3 (3) | C21—C16—C17—C18B | −12.2 (4) |
C11—C12—N4—C5 | −0.8 (2) | C23—C13—C14—C15 | −1.1 (3) |
C11—C12—N4—B1 | 178.19 (19) | C23—C13—C14—N22 | 177.37 (19) |
C12—C13—C14—C15 | −178.4 (2) | N4—C5—C6—C7 | 166.52 (19) |
C12—C13—C14—N22 | 0.1 (3) | N4—C5—C10—C9 | −179.72 (18) |
C13—C12—N4—C5 | 178.88 (18) | N4—C5—C10—C11 | −0.1 (2) |
C13—C12—N4—B1 | −2.2 (3) | N4—C12—C13—C14 | 0.1 (3) |
C13—C14—C15—C16 | 178.4 (2) | N4—C12—C13—C23 | −177.26 (18) |
C13—C14—N22—C21 | −178.18 (18) | N4—B1—N22—C14 | −3.3 (3) |
C13—C14—N22—B1 | 1.8 (3) | N4—B1—N22—C21 | 176.75 (17) |
C14—C15—C16—C17 | 179.5 (2) | N22—C14—C15—C16 | −0.2 (2) |
C14—C15—C16—C21 | −0.3 (2) | N22—B1—N4—C5 | −177.86 (18) |
C15—C14—N22—C21 | 0.6 (2) | N22—B1—N4—C12 | 3.4 (3) |
C15—C14—N22—B1 | −179.37 (18) | F2—B1—N4—C5 | −58.4 (3) |
C15—C16—C17—C18A | −164.6 (3) | F2—B1—N4—C12 | 122.9 (2) |
C15—C16—C17—C18B | 168.0 (3) | F2—B1—N22—C14 | −123.3 (2) |
C15—C16—C21—C20 | −178.5 (2) | F2—B1—N22—C21 | 56.8 (3) |
C15—C16—C21—N22 | 0.7 (2) | F3—B1—N4—C5 | 62.7 (3) |
C16—C17—C18A—C19A | −49.1 (5) | F3—B1—N4—C12 | −116.0 (2) |
C16—C17—C18B—C19B | 40.7 (7) | F3—B1—N22—C14 | 116.3 (2) |
C16—C21—N22—C14 | −0.8 (2) | F3—B1—N22—C21 | −63.7 (3) |
C16—C21—N22—B1 | 179.16 (19) |
Symmetry codes: (i) x+1, y, z; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1. |
Cg1 and Cg2 are the centroids of the N4,C5,C10–C12 and N22,C21,C14–C16 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C23—H23B···F3iv | 0.96 | 2.66 | 3.621 (3) | 178 |
C8—H8B···F2v | 0.97 | 2.56 | 3.252 (3) | 129 |
C17—H17A···Cg2iii | 0.97 | 3.10 | 3.879 (3) | 138 |
Symmetry codes: (iii) −x+1, −y+1, −z+1; (iv) −x, −y+1, −z; (v) x−1/2, −y+1/2, z−1/2. |
Cg1 and Cg2 are the centroids of the N4,C5,C10–C12 and N22,C21,C14–C16 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
C23—H23B···F3i | 0.96 | 2.66 | 3.621 (3) | 177.8 |
C8—H8B···F2ii | 0.97 | 2.56 | 3.252 (3) | 128.7 |
C17—H17A···Cg2iii | 0.97 | 3.10 | 3.879 (3) | 138 |
Symmetry codes: (i) −x, −y+1, −z; (ii) x−1/2, −y+1/2, z−1/2; (iii) −x+1, −y+1, −z+1. |
Acknowledgements
Professor Kari Rissanen is gratefully acknowledged for his help with the data collection and structure
Dr Arto Valkonen and Filip Topic are acknowledged for their help with preparing the file.References
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Lipid droplets are metabolically active organelles (Beller et al., 2010; Bickel et al., 2009), which function as intracellular storehouses of lipid esters found inside almost all cells. LD540 is one of the dyes that can be used for multicolor fluorescence imaging for lipid droplets in both fixed and living cells (Spandl et al., 2009). In the structure of the title compound, the BODIPY core is planar having the average dihedral angle formed between the two pyrrole rings of 2.3 (3)° (Fig. 1). The two tetramethylene substituents on either side of the BODIPY core at the 2,3- and 5,6-positions are in a half-chair conformation. Intermolecular F···H—C interactions (distance of 2.661 (3) Å) between the fluoride (F3) and methyl (C23) groups of the opposite facing molecules connect the two LD540 molecules to form a dimer (Fig.2, Table 2). In a similar manner, the second fluoride (F2) atom forms an intermolecular F···H—C interaction (distance of 2.555 (3) Å) to one of the CH2 (C8) groups of the tetramethylene unit connecting the neighbouring dimer pairs in an infinite array through the crystal lattice (Fig. 3, Table 2). In addition to the F···H—C interactions, intermolecular C—H···π interactions [C18A—H18A···Cg1i = 2.812 Å and C17—H17A···Cg2ii = 3.103 Å; Cg1 and Cg2 are the centroids of rings N4,C5,C10-C12 and N22,C21,C14-C16, respectively; symmetry codes: (i) x + 1, y, z; (ii) -x, -y + 1, -z + 1] and π···π interactions [Cg2···Cg2iii = 4.360 (3) Å; symmetry code: (iii) -x + 1, -y + 1, -z +1] are observed between the BODIPY core and the tetramethylene substituents of the neighbouring dimer pairs.