organic compounds\(\def\hfill{\hskip 5em}\def\hfil{\hskip 3em}\def\eqno#1{\hfil {#1}}\)

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ISSN: 2056-9890

2-(1,3-Benzodioxol-5-yl)-1H-benzimid­azole

aUnité de Recherche de Chimie de l'Environnement et Moléculaire Structurale (CHEMS), Faculté des Sciences Exactes, Département de Chimie, Université Constantine 1, Algeria
*Correspondence e-mail: king.ali@hotmail.fr

(Received 25 November 2013; accepted 11 January 2014; online 18 January 2014)

The asymmetric unit of the title compound, C14H10N2O2, contains two independent mol­ecules. In each mol­ecule, the benzodioxole ring system displays an envelope conformation, with the methyl­ene C atom located at the flap deviating by 0.081 (2) and 0.230 (2) Å from the mean plane formed by the other atoms. The dihedral angles between the benzo­imidazole ring system (all atoms) and the benzodioxole benzene ring are 15.35 (6) and 10.99 (7)°. In the crystal, mol­ecules are linked by N—H⋯N hydrogen bonds into chains running along the [101].

Related literature

For the biological activity of imidazole derivatives and their use as inhibitors of neurodegenerative disorders and as anti­tumor drugs, see: Park et al. (1977[Park, S. W., Reid, W. & Schuckmann, W. (1977). Liebigs Ann. Chem. pp. 106-115.]). For related imidazole compounds, see: Andreani et al. (2005[Andreani, A., Granaiola, M., Leoni, A., Locatelli, A., Morigi, R., Rambaldi, M., Garaliene, V., Welsh, W., Arora, S., Farruggia, G. & Masotti, L. (2005). J. Med. Chem. 48, 5604-5607.]); Xu et al. (2010[Xu, H., Zhang, Y., Huang, J.-Q. & Chen, W.-Z. (2010). Org. Lett. 12, 3704-3707.]).

[Scheme 1]

Experimental

Crystal data
  • C14H10N2O2

  • Mr = 238.24

  • Monoclinic, P 21 /n

  • a = 8.7454 (7) Å

  • b = 15.2824 (11) Å

  • c = 16.9487 (13) Å

  • β = 91.974 (5)°

  • V = 2263.9 (3) Å3

  • Z = 8

  • Mo Kα radiation

  • μ = 0.10 mm−1

  • T = 293 K

  • 0.03 × 0.02 × 0.01 mm

Data collection
  • Nonius KappaCCD diffractometer

  • 13101 measured reflections

  • 4003 independent reflections

  • 3422 reflections with I > 2σ(I)

  • Rint = 0.018

Refinement
  • R[F2 > 2σ(F2)] = 0.034

  • wR(F2) = 0.088

  • S = 1.02

  • 4003 reflections

  • 325 parameters

  • H-atom parameters constrained

  • Δρmax = 0.19 e Å−3

  • Δρmin = −0.18 e Å−3

Table 1
Hydrogen-bond geometry (Å, °)

D—H⋯A D—H H⋯A DA D—H⋯A
N1—H1N⋯N4i 0.86 1.93 2.7761 (15) 168
N3—H3N⋯N2 0.86 1.96 2.8053 (16) 168
Symmetry code: (i) [x-{\script{1\over 2}}, -y+{\script{1\over 2}}, z-{\script{1\over 2}}].

Data collection: KappaCCD Server Software (Nonius, 1999[Nonius (1999). KappaCCD Server Software. Nonius BV, Delft, The Netherlands.]); cell refinement: KappaCCD Server Software; data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997[Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, PArt A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307-326. New York: Academic Press.]); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008[Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.]); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012[Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849-854.]); software used to prepare material for publication: SHELXL97.

Supporting information


Comment top

Owing to the promising biological activities as inhibitors of neurodegenerative disorders and antitumor drugs (Park et al., 1977), most of these investigations were carried out with imidazole (Andreani et al., 2005; Xu et al., 2010).

A view of the molecular structure of (I) with numbering Scheme is Shown in Fig1. In the crystal, intermolecular N—H···N hydrogen bond Fig2, link the molecules into chains running along the [101] direction.

Related literature top

For the biological activity of imidazole derivatives and their use as inhibitors of neurodegenerative disorders and as antitumor drugs, see: Park et al. (1977). For related imidazole compounds, see: Andreani et al. (2005); Xu et al. (2010).

Experimental top

A mixture of 1,2-diaminebenzene (2.3 g) and benzo[d][1,3]dioxole-5-carbaldehyde (0.02 mole) in ethanol (60 ml) was refluxed for 6 h. The yellow crystals obtained are filter and rinsed by a mixture of water ice ethanol, the recrystalization is done in excess of chloroform in 15 days.

Refinement top

The H atoms attached to C atoms and N atom were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) and N—H = 0.86 Å with Uiso(H) = 1.2Ueq(C,N).

Structure description top

Owing to the promising biological activities as inhibitors of neurodegenerative disorders and antitumor drugs (Park et al., 1977), most of these investigations were carried out with imidazole (Andreani et al., 2005; Xu et al., 2010).

A view of the molecular structure of (I) with numbering Scheme is Shown in Fig1. In the crystal, intermolecular N—H···N hydrogen bond Fig2, link the molecules into chains running along the [101] direction.

For the biological activity of imidazole derivatives and their use as inhibitors of neurodegenerative disorders and as antitumor drugs, see: Park et al. (1977). For related imidazole compounds, see: Andreani et al. (2005); Xu et al. (2010).

Computing details top

Data collection: KappaCCD Server Software (Nonius, 1999); cell refinement: KappaCCD Server Software (Nonius, 1999); data reduction: DENZO and SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).

Figures top
[Figure 1] Fig. 1. View of the molecular structure of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
[Figure 2] Fig. 2. Partial view along the b axis of the crystal packing of the title compound, showing the hydrogen bonds as dashed lines (see Table 1 for details).
2-(1,3-Benzodioxol-5-yl)-1H-benzimidazole top
Crystal data top
C14H10N2O2F(000) = 992
Mr = 238.24Dx = 1.398 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5620 reflections
a = 8.7454 (7) Åθ = 2.5–25.1°
b = 15.2824 (11) ŵ = 0.10 mm1
c = 16.9487 (13) ÅT = 293 K
β = 91.974 (5)°Prism, yellow
V = 2263.9 (3) Å30.03 × 0.02 × 0.01 mm
Z = 8
Data collection top
Nonius KappaCCD
diffractometer
3422 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
Graphite monochromatorθmax = 25.1°, θmin = 1.8°
CCD rotation images, thick slices scansh = 1010
13101 measured reflectionsk = 1818
4003 independent reflectionsl = 1820
Refinement top
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.02 w = 1/[σ2(Fo2) + (0.0405P)2 + 0.8431P]
where P = (Fo2 + 2Fc2)/3
4003 reflections(Δ/σ)max = 0.001
325 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = 0.18 e Å3
Crystal data top
C14H10N2O2V = 2263.9 (3) Å3
Mr = 238.24Z = 8
Monoclinic, P21/nMo Kα radiation
a = 8.7454 (7) ŵ = 0.10 mm1
b = 15.2824 (11) ÅT = 293 K
c = 16.9487 (13) Å0.03 × 0.02 × 0.01 mm
β = 91.974 (5)°
Data collection top
Nonius KappaCCD
diffractometer
3422 reflections with I > 2σ(I)
13101 measured reflectionsRint = 0.018
4003 independent reflections
Refinement top
R[F2 > 2σ(F2)] = 0.0340 restraints
wR(F2) = 0.088H-atom parameters constrained
S = 1.02Δρmax = 0.19 e Å3
4003 reflectionsΔρmin = 0.18 e Å3
325 parameters
Special details top

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top
xyzUiso*/Ueq
N10.16720 (13)0.28274 (7)0.48294 (6)0.0245 (3)
H1N0.15840.26510.43480.029*
N20.27132 (13)0.34182 (7)0.59250 (6)0.0248 (3)
N30.46175 (13)0.33066 (7)0.72874 (7)0.0268 (3)
H3N0.41340.32920.68370.032*
N40.59892 (13)0.28499 (7)0.83388 (6)0.0251 (3)
O10.83709 (13)0.38755 (9)0.37149 (7)0.0532 (3)
O20.79659 (12)0.45860 (7)0.48949 (7)0.0413 (3)
O30.51495 (14)0.07450 (7)0.63889 (7)0.0452 (3)
O40.36723 (14)0.03150 (7)0.57597 (6)0.0439 (3)
C10.43467 (16)0.33554 (9)0.47685 (8)0.0248 (3)
C20.46177 (17)0.29304 (10)0.40626 (9)0.0330 (3)
H20.38890.25430.38550.040*
C30.59527 (18)0.30704 (11)0.36603 (9)0.0405 (4)
H30.61330.27870.31870.049*
C40.69848 (17)0.36405 (10)0.39901 (9)0.0342 (4)
C50.89677 (19)0.45149 (10)0.42461 (11)0.0414 (4)
H5A0.90410.50750.39800.050*
H5B0.99840.43460.44370.050*
C60.67386 (16)0.40628 (9)0.46969 (9)0.0290 (3)
C70.54339 (15)0.39333 (9)0.51010 (8)0.0260 (3)
H70.52730.42170.55770.031*
C80.29278 (15)0.32083 (8)0.51781 (7)0.0219 (3)
C90.12289 (16)0.31528 (9)0.60706 (8)0.0250 (3)
C100.03920 (17)0.32189 (9)0.67524 (8)0.0316 (3)
H100.08100.34740.72090.038*
C110.10750 (18)0.28935 (10)0.67265 (9)0.0380 (4)
H110.16530.29280.71760.046*
C120.17177 (18)0.25144 (10)0.60455 (10)0.0374 (4)
H120.27120.22990.60520.045*
C130.09151 (16)0.24510 (9)0.53635 (9)0.0308 (3)
H130.13480.22020.49080.037*
C140.05686 (15)0.27748 (8)0.53860 (8)0.0242 (3)
C150.53562 (15)0.17347 (9)0.73203 (8)0.0239 (3)
C160.63003 (16)0.11017 (9)0.76669 (9)0.0301 (3)
H160.69440.12570.80920.036*
C170.63104 (18)0.02407 (10)0.73960 (10)0.0365 (4)
H170.69430.01810.76310.044*
C180.53483 (17)0.00446 (9)0.67688 (9)0.0329 (3)
C190.3884 (2)0.06069 (11)0.58423 (10)0.0455 (4)
H19A0.40970.08660.53350.055*
H19B0.29670.08750.60390.055*
C200.44481 (17)0.06728 (10)0.64038 (8)0.0304 (3)
C210.44051 (17)0.15187 (9)0.66618 (8)0.0293 (3)
H210.37760.19330.64140.035*
C220.53328 (15)0.26200 (9)0.76528 (7)0.0227 (3)
C230.48053 (16)0.40285 (9)0.77669 (8)0.0272 (3)
C240.43107 (19)0.48911 (10)0.76926 (9)0.0371 (4)
H240.37340.50800.72540.045*
C250.4717 (2)0.54506 (10)0.83015 (10)0.0415 (4)
H250.44150.60330.82710.050*
C260.5574 (2)0.51643 (10)0.89636 (9)0.0395 (4)
H260.58230.55610.93640.047*
C270.60577 (18)0.43110 (10)0.90375 (9)0.0339 (3)
H270.66220.41240.94810.041*
C280.56718 (16)0.37349 (9)0.84232 (8)0.0256 (3)
Atomic displacement parameters (Å2) top
U11U22U33U12U13U23
N10.0275 (6)0.0278 (6)0.0181 (5)0.0007 (5)0.0025 (5)0.0013 (4)
N20.0284 (6)0.0265 (6)0.0194 (6)0.0001 (5)0.0019 (5)0.0003 (4)
N30.0318 (7)0.0279 (6)0.0203 (6)0.0001 (5)0.0069 (5)0.0008 (5)
N40.0279 (6)0.0270 (6)0.0203 (6)0.0001 (5)0.0022 (5)0.0006 (5)
O10.0384 (7)0.0707 (9)0.0516 (7)0.0127 (6)0.0180 (6)0.0126 (6)
O20.0320 (6)0.0425 (6)0.0496 (7)0.0109 (5)0.0057 (5)0.0056 (5)
O30.0553 (7)0.0301 (6)0.0501 (7)0.0003 (5)0.0000 (6)0.0116 (5)
O40.0605 (8)0.0354 (6)0.0348 (6)0.0073 (5)0.0099 (5)0.0088 (5)
C10.0265 (7)0.0248 (7)0.0228 (7)0.0036 (5)0.0038 (6)0.0024 (5)
C20.0298 (8)0.0402 (9)0.0288 (8)0.0007 (6)0.0008 (6)0.0069 (6)
C30.0381 (9)0.0535 (10)0.0303 (8)0.0005 (8)0.0063 (7)0.0128 (7)
C40.0285 (8)0.0408 (9)0.0335 (8)0.0036 (6)0.0077 (7)0.0021 (7)
C50.0340 (8)0.0338 (8)0.0573 (11)0.0026 (7)0.0140 (8)0.0051 (7)
C60.0269 (7)0.0246 (7)0.0353 (8)0.0002 (6)0.0024 (6)0.0032 (6)
C70.0282 (7)0.0255 (7)0.0242 (7)0.0020 (6)0.0001 (6)0.0003 (5)
C80.0260 (7)0.0199 (6)0.0194 (7)0.0018 (5)0.0033 (5)0.0019 (5)
C90.0281 (7)0.0229 (7)0.0240 (7)0.0031 (5)0.0007 (6)0.0049 (5)
C100.0403 (9)0.0314 (8)0.0233 (7)0.0018 (6)0.0029 (6)0.0024 (6)
C110.0394 (9)0.0394 (9)0.0359 (9)0.0033 (7)0.0115 (7)0.0090 (7)
C120.0283 (8)0.0397 (9)0.0446 (9)0.0017 (7)0.0041 (7)0.0129 (7)
C130.0288 (8)0.0306 (8)0.0326 (8)0.0028 (6)0.0041 (6)0.0058 (6)
C140.0270 (7)0.0220 (7)0.0235 (7)0.0020 (5)0.0012 (6)0.0050 (5)
C150.0227 (7)0.0277 (7)0.0216 (7)0.0025 (5)0.0041 (5)0.0006 (5)
C160.0279 (7)0.0321 (8)0.0300 (8)0.0015 (6)0.0016 (6)0.0029 (6)
C170.0366 (8)0.0306 (8)0.0421 (9)0.0084 (6)0.0011 (7)0.0016 (7)
C180.0375 (8)0.0276 (8)0.0342 (8)0.0019 (6)0.0079 (7)0.0050 (6)
C190.0595 (11)0.0351 (9)0.0415 (10)0.0096 (8)0.0008 (8)0.0115 (7)
C200.0344 (8)0.0337 (8)0.0232 (7)0.0068 (6)0.0011 (6)0.0035 (6)
C210.0349 (8)0.0283 (7)0.0246 (7)0.0012 (6)0.0022 (6)0.0020 (6)
C220.0222 (7)0.0271 (7)0.0188 (7)0.0010 (5)0.0018 (5)0.0019 (5)
C230.0302 (8)0.0277 (7)0.0236 (7)0.0012 (6)0.0009 (6)0.0009 (6)
C240.0443 (9)0.0301 (8)0.0362 (9)0.0030 (7)0.0072 (7)0.0037 (6)
C250.0521 (10)0.0268 (8)0.0456 (10)0.0031 (7)0.0006 (8)0.0020 (7)
C260.0526 (10)0.0322 (8)0.0337 (9)0.0036 (7)0.0001 (8)0.0085 (6)
C270.0411 (9)0.0364 (8)0.0239 (7)0.0030 (7)0.0043 (6)0.0027 (6)
C280.0282 (7)0.0267 (7)0.0218 (7)0.0021 (6)0.0009 (6)0.0005 (5)
Geometric parameters (Å, º) top
N1—C81.3599 (17)C9—C141.4025 (19)
N1—C141.3749 (17)C10—C111.375 (2)
N1—H1N0.8600C10—H100.9300
N2—C81.3256 (17)C11—C121.393 (2)
N2—C91.3902 (18)C11—H110.9300
N3—C221.3599 (17)C12—C131.376 (2)
N3—C231.3768 (18)C12—H120.9300
N3—H3N0.8600C13—C141.388 (2)
N4—C221.3261 (17)C13—H130.9300
N4—C281.3890 (18)C15—C161.389 (2)
O1—C41.3619 (18)C15—C211.4080 (19)
O1—C51.416 (2)C15—C221.4660 (19)
O2—C61.3709 (17)C16—C171.394 (2)
O2—C51.4335 (19)C16—H160.9300
O3—C181.3760 (18)C17—C181.366 (2)
O3—C191.434 (2)C17—H170.9300
O4—C201.3784 (17)C18—C201.375 (2)
O4—C191.427 (2)C19—H19A0.9700
C1—C21.389 (2)C19—H19B0.9700
C1—C71.4017 (19)C20—C211.366 (2)
C1—C81.4600 (19)C21—H210.9300
C2—C31.389 (2)C23—C241.392 (2)
C2—H20.9300C23—C281.3981 (19)
C3—C41.361 (2)C24—C251.377 (2)
C3—H30.9300C24—H240.9300
C4—C61.384 (2)C25—C261.398 (2)
C5—H5A0.9700C25—H250.9300
C5—H5B0.9700C26—C271.375 (2)
C6—C71.3652 (19)C26—H260.9300
C7—H70.9300C27—C281.396 (2)
C9—C101.3926 (19)C27—H270.9300
C8—N1—C14107.59 (11)C12—C13—C14117.08 (14)
C8—N1—H1N126.2C12—C13—H13121.5
C14—N1—H1N126.2C14—C13—H13121.5
C8—N2—C9105.23 (11)N1—C14—C13132.81 (13)
C22—N3—C23107.80 (11)N1—C14—C9105.36 (12)
C22—N3—H3N126.1C13—C14—C9121.83 (13)
C23—N3—H3N126.1C16—C15—C21119.89 (13)
C22—N4—C28105.45 (11)C16—C15—C22119.74 (12)
C4—O1—C5106.09 (12)C21—C15—C22120.35 (12)
C6—O2—C5105.20 (12)C15—C16—C17121.91 (14)
C18—O3—C19104.80 (12)C15—C16—H16119.0
C20—O4—C19104.78 (12)C17—C16—H16119.0
C2—C1—C7120.50 (13)C18—C17—C16116.92 (14)
C2—C1—C8120.70 (13)C18—C17—H17121.5
C7—C1—C8118.80 (12)C16—C17—H17121.5
C3—C2—C1121.48 (14)C17—C18—C20121.65 (14)
C3—C2—H2119.3C17—C18—O3128.39 (14)
C1—C2—H2119.3C20—C18—O3109.91 (13)
C4—C3—C2117.00 (14)O4—C19—O3107.66 (12)
C4—C3—H3121.5O4—C19—H19A110.2
C2—C3—H3121.5O3—C19—H19A110.2
C3—C4—O1127.87 (14)O4—C19—H19B110.2
C3—C4—C6122.23 (14)O3—C19—H19B110.2
O1—C4—C6109.90 (14)H19A—C19—H19B108.5
O1—C5—O2108.56 (12)C21—C20—C18122.58 (14)
O1—C5—H5A110.0C21—C20—O4127.65 (14)
O2—C5—H5A110.0C18—C20—O4109.76 (13)
O1—C5—H5B110.0C20—C21—C15116.98 (13)
O2—C5—H5B110.0C20—C21—H21121.5
H5A—C5—H5B108.4C15—C21—H21121.5
C7—C6—O2128.50 (13)N4—C22—N3111.92 (12)
C7—C6—C4121.62 (13)N4—C22—C15124.77 (12)
O2—C6—C4109.87 (13)N3—C22—C15123.32 (12)
C6—C7—C1117.17 (13)N3—C23—C24132.47 (13)
C6—C7—H7121.4N3—C23—C28105.24 (12)
C1—C7—H7121.4C24—C23—C28122.30 (13)
N2—C8—N1112.32 (12)C25—C24—C23116.66 (14)
N2—C8—C1124.57 (12)C25—C24—H24121.7
N1—C8—C1123.11 (11)C23—C24—H24121.7
N2—C9—C10130.30 (13)C24—C25—C26121.64 (15)
N2—C9—C14109.49 (12)C24—C25—H25119.2
C10—C9—C14120.21 (13)C26—C25—H25119.2
C11—C10—C9117.62 (14)C27—C26—C25121.64 (14)
C11—C10—H10121.2C27—C26—H26119.2
C9—C10—H10121.2C25—C26—H26119.2
C10—C11—C12121.76 (14)C26—C27—C28117.67 (14)
C10—C11—H11119.1C26—C27—H27121.2
C12—C11—H11119.1C28—C27—H27121.2
C13—C12—C11121.50 (14)N4—C28—C27130.30 (13)
C13—C12—H12119.3N4—C28—C23109.59 (12)
C11—C12—H12119.3C27—C28—C23120.09 (13)
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···N4i0.861.932.7761 (15)168
N3—H3N···N20.861.962.8053 (16)168
Symmetry code: (i) x1/2, y+1/2, z1/2.
Hydrogen-bond geometry (Å, º) top
D—H···AD—HH···AD···AD—H···A
N1—H1N···N4i0.861.932.7761 (15)168
N3—H3N···N20.861.962.8053 (16)168
Symmetry code: (i) x1/2, y+1/2, z1/2.
 

Acknowledgements

We thank all researchers of the CHEMS Research Unit, University of Constantine 1, Algeria, for their valuable assistance and the MESRS (Algeria) for financial support.

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